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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046595 ID=TCONS_00046595|Name=TCONS_00046595|organism=Clytia hemisphaerica|type=transcript|length=892bp
GGTTTCGAAGTGTTTGATCCAGATGGGTCGAAGTTCAGTTGGAATTGTGT
CGTCCCAATCTAGTTGTCTTGTTGAAAGATCGTGTAAGTCAAGCTTCATA
GCAGCAACTATTGGTGTCATCATTCCTGTGATGTCAAAAATTTCTGCAAC
TTTGGAAGCACAGTGCCTTCTAGTGAGATTGGTTGGAATGATGTTTGATG
CATTGGTTGGTTTCTTGCCTCTTTGCTTCTTTGCGAAATTCAAATCTGAG
ATGCAGAGTGAGAGTCGATCGGCTTTGGGATACCACTTCATACCACCAAC
TGAAATGCTAACACCATCGTCTGTGAGGTCTGGTGATGGATCAATGCCAG
AGAATGTCACACCTTTGAGGTTGAATCCTCCACGATTGATGACAACTTCT
AACTGATCAGCTCTGTTGAAAGCTTCGTCAATGTCTTTCTCGCCTGTTAT
GCAATCGTCAACGTATACATCTTCATTGATGATTAGCTTCACTTCTGGAT
ATTCATCTCCAAATAGGTTTGCGATTGCACGGAGACCACATTCTGCTTGG
TTTCCACTTGATCGTATCCCATAAATGAGTGTCTTGATTACCTTTTCCTT
TGGAATCTTTGATGGGTTGAGGTTATTCTGCCAGATGTAACGCTGGTAAC
ACCAATCTTTGCAGTTGAGTCTGATCGTGTTCATCTGATAAGAACTTCTT
GGAGCTTGTTGAGGTTGTTCTGTCCTTTTGCCAACAAATCATTCAGACTA
TAACCTGAGCTGGTTGGGTGTGATGCGTCATATACGACTCGACATGGTGT
ACTTAGTGATGTGGTTTTCCATACAGCACGCCATGGGATGAAGTTGTGCG
TTGGTGAGTCAGCTAACATGGTTTGTTGGTCAGCAGTGAGAT Run BLAST on NCBI transcript from alignment at scaffold_114:154237..155339- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046595 ID=TCONS_00046595|Name=TCONS_00046595|organism=Clytia hemisphaerica|type=transcript|length=1103bp|location=Sequence derived from alignment at scaffold_114:154237..155339- (Clytia hemisphaerica)
GGTTTCGAAGTGTTTGATCCAGATGGGTCGAAGTTCAGTTGGAATTGTGT
CGTCCCAATCTAGTTGTCTTGTTGAAAGATCGTGTAAGTCAAGCTTCATA
GCAGCAACTATTGGTGTCATCATTCCTGTGATGTCAAAAATTTCTGCAAC
TTTGGAAGCACAGTGCCTTCTAGTGAGATTGGTTGGAATGATGTTTGATG
CATTGGTTGGTTTCTTGCCTCTTTGCTTCTTTGCGAAATTCAAATCTGAG
ATGCAGAGTGAGAGTCGATCGGCTTTGGGATACCACTTCATACCACCAAC
TGAAATGCTAACACCATCGTCTGTGAGGTCTGGTGATGGATCAATGCCAG
AGAATGTCACACCTTTGAGGTTGAATCCTCCACGATTGATGACAACTTCT
AACTGATCAGCTCTGTTGAAAGCTTCGTCAATGTCTTTCTCGCCTGTTAT
GCAATCGTCAACGTATACATCTTCATTGATGATTAGCTTCACTTCTGGAT
ATTCATCTCCAAATAGGTTTGCGATTGCACGGAGACCACATTCTGCTTGG
TTTCCACTTGATCGTATCCCATAAATGAGTGTCTTGATTACCTTTTCCTT
TGGAATCTTTGATGGGTTGAGGTTATTCTGCCAGATGTAACGCTGGTAAC
ACCAATCTTTGCAGTTGAGTCTGATCGTGTTATACATTTTTCGTATATCC
GTGTGTATGNCTTGGTTTCCACTTGATCGTATCCCGTAAATGAGTGTCTT
GATTACCTTTTCCTTTGGAATCTTTGATGGGTCGAGGTTATTCTGCCAGA
TATAACGCTGGTAACACCAGTCTTTGCATTTGAGTCTGATCGTGTTATGC
ATTTTTCGTATATCCGTGTGTATGCTAACTTGATGTATGGACCATCTGAT
AAGAACTTCTTGGAGCTTGTTGAGGTTGTTCTGTCCTTTTGCCAACAAAT
CATTCAGACTATAACCTGAGCTGGTTGGGTGTGATGCGTCATATACGACT
CGACATGGTGTACTTAGTGATGTGGTTTTCCATACAGCACGCCATGGGAT
GAAGTTGTGCGTTGGTGAGTCAGCTAACATGGTTTGTTGGTCAGCAGTGA
GAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046595-exon-scaffold_114-1575043694:154659..155339 | TCONS_00046595-exon-scaffold_114-1575043694:154659..155339 | Clytia hemisphaerica | exon |
| TCONS_00046595-exon-scaffold_114-1575043694:154237..154447 | TCONS_00046595-exon-scaffold_114-1575043694:154237..154447 | Clytia hemisphaerica | exon |
| TCONS_00046595-exon-scaffold_114-1510915933:154659..155339 | TCONS_00046595-exon-scaffold_114-1510915933:154659..155339 | Clytia hemisphaerica | exon |
| TCONS_00046595-exon-scaffold_114-1510915933:154237..154447 | TCONS_00046595-exon-scaffold_114-1510915933:154237..154447 | Clytia hemisphaerica | exon |
| TCONS_00046595-exon-scaffold_114-1491911889:154659..155339 | TCONS_00046595-exon-scaffold_114-1491911889:154659..155339 | Clytia hemisphaerica | exon |
| TCONS_00046595-exon-scaffold_114-1491911889:154237..154447 | TCONS_00046595-exon-scaffold_114-1491911889:154237..154447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_114 | supercontig | scaffold_114:154237..155339 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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