TCONS_00046602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046602
Unique NameTCONS_00046602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046602 ID=TCONS_00046602|Name=TCONS_00046602|organism=Clytia hemisphaerica|type=transcript|length=761bp
GTTCAAAGTGTATCAAGTTAAAGGAAATACAGTGGCATTTTAtagtgaaa
aatggaaaaagtttttgggaaGAAAATACCGATGGGAAAGAATGTGGGGC
GATGATTCCCGCCAAAACATTGAAGCGGTTATGAGCGGAATTAAAAGCGC
GTCTATATTTACAGTGTCGACAGGGTCGGTTACTCCAGTAAAGGAAGAAA
TCATGTCCATAAAATGGGGTAATTATGTTGGTCCTTCATCCGTTTCTCCA
ACTCTTGTCAGTacaaaagtcagaaaaaatggTGGAAGTAAAGATATTAC
TGATGTCTTCGGGTTCGAAAAATCCATCGAAAGAACACAAGAGGGAGCAC
GCTTGGGGGATAACTGCTGGTATTAGCTACACATCTAGTGCTTCGGTGAA
TGTCGGTGTTGCTGAAGCATCTACATCACTAACTGTCAGTGCTGAAGTCA
ACTATAACGGTAAGAAAGGCGGAAATCAAGGGAAAACGACAAGCTTTAAA
GTACACGACACAACCACAGTCACCATTCCAGCTGGAAAATACGCAACCGT
AAAATTCAAAGTAACAATAATCAACGACGCCAAAATCCCATTTGTAGCGA
CAATCAAGAGGACCTCAGAAGCAGGAATACAAATAATCACACAAAAGGGT
ACGTGGAATGGCGTGATGGTTGTTGATTCCTTCATTGAGGTCCAAGAAAG
ACCACTCTCAAATCCACTAAAggtacaataaaaacaaacttcttatTCAT
TACCGTTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00046602-protein

>TCONS_00046602-protein ID=TCONS_00046602-protein|Name=TCONS_00046602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MLVLHPFLQLLSVQKSEKMVEVKILLMSSGSKNPSKEHKREHAWGITAGI
SYTSSASVNVGVAEASTSLTVSAEVNYNGKKGGNQGKTTSFKVHDTTTVT
IPAGKYATVKFKVTIINDAKIPFVATIKRTSEAGIQIITQKGTWNGVMVV
DSFIEVQERPLSNPLKVQ
Run BLAST on NCBI

transcript from alignment at scaffold_114:116824..117584

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046602 ID=TCONS_00046602|Name=TCONS_00046602|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at scaffold_114:116824..117584 (Clytia hemisphaerica)
ATTTAACGGTAATGAataagaagtttgtttttattgtaccTTTAGTGGAT
TTGAGAGTGGTCTTTCTTGGACCTCAATGAAGGAATCAACAACCATCACG
CCATTCCACGTACCCTTTTGTGTGATTATTTGTATTCCTGCTTCTGAGGT
CCTCTTGATTGTCGCTACAAATGGGATTTTGGCGTCGTTGATTATTGTTA
CTTTGAATTTTACGGTTGCGTATTTTCCAGCTGGAATGGTGACTGTGGTT
GTGTCGTGTACTTTAAAGCTTGTCGTTTTCCCTTGATTTCCGCCTTTCTT
ACCGTTATAGTTGACTTCAGCACTGACAGTTAGTGATGTAGATGCTTCAG
CAACACCGACATTCACCGAAGCACTAGATGTGTAGCTAATACCAGCAGTT
ATCCCCCAAGCGTGCTCCCTCTTGTGTTCTTTCGATGGATTTTTCGAACC
CGAAGACATCAGTAATATCTTTACTTCCAccattttttctgacttttgtA
CTGACAAGAGTTGGAGAAACGGATGAAGGACCAACATAATTACCCCATTT
TATGGACATGATTTCTTCCTTTACTGGAGTAACCGACCCTGTCGACACTG
TAAATATAGACGCGCTTTTAATTCCGCTCATAACCGCTTCAATGTTTTGG
CGGGAATCATCGCCCCACATTCTTTCCCATCGGTATTTTCttcccaaaaa
ctttttccatttttcactaTAAAATGCCACTGTATTTCCTTTAACTTGAT
ACACTTTGAAC

Coding sequence (CDS) from alignment at scaffold_114:116824..117584

>TCONS_00046602 ID=TCONS_00046602|Name=TCONS_00046602|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_114:116824..117584 (Clytia hemisphaerica)
ttattgtaccTTTAGTGGATTTGAGAGTGGTCTTTCTTGGACCTCAATGA
AGGAATCAACAACCATCACGCCATTCCACGTACCCTTTTGTGTGATTATT
TGTATTCCTGCTTCTGAGGTCCTCTTGATTGTCGCTACAAATGGGATTTT
GGCGTCGTTGATTATTGTTACTTTGAATTTTACGGTTGCGTATTTTCCAG
CTGGAATGGTGACTGTGGTTGTGTCGTGTACTTTAAAGCTTGTCGTTTTC
CCTTGATTTCCGCCTTTCTTACCGTTATAGTTGACTTCAGCACTGACAGT
TAGTGATGTAGATGCTTCAGCAACACCGACATTCACCGAAGCACTAGATG
TGTAGCTAATACCAGCAGTTATCCCCCAAGCGTGCTCCCTCTTGTGTTCT
TTCGATGGATTTTTCGAACCCGAAGACATCAGTAATATCTTTACTTCCAc
cattttttctgacttttgtACTGACAAGAGTTGGAGAAACGGATGAAGGA
CCAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029746XLOC_029746Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046602-proteinTCONS_00046602-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046602-exon-scaffold_114-1491911889:116824..117584TCONS_00046602-exon-scaffold_114-1491911889:116824..117584Clytia hemisphaericaexon
TCONS_00046602-exon-scaffold_114-1510915933:116824..117584TCONS_00046602-exon-scaffold_114-1510915933:116824..117584Clytia hemisphaericaexon
TCONS_00046602-exon-scaffold_114-1575043694:116824..117584TCONS_00046602-exon-scaffold_114-1575043694:116824..117584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:116824..117584 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	4.13793e-09	0.122507	0	0	0	0	0.38679	0.605978	0.269423	0	0.17451	0.0854896	0.399518	0.97051	2.12904	0.482482	0.247264	0.888183	1.50137	3.04628	3.11401	5.14618	5.96839	0.13801	0.184757	0	0	0.0713361	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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