TCONS_00046608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046608
Unique NameTCONS_00046608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046608 ID=TCONS_00046608|Name=TCONS_00046608|organism=Clytia hemisphaerica|type=transcript|length=382bp
gtaaacaaaatgtaaacaaatatggtGGCTAAagctatgaaatattttac
gatacaaatttttatgaaattttctttttataatttttataattttggtt
ttataatcaaTAACTTTACACTCCCCACAAAGAAAATTGAGTTGAAATTT
ATTAAATCACTTGGCATTTGACTTTAAGTCAATGTCTTTTGCGAGAGCAC
CAAGCTCGGCAATCAAGTCATTTTCATCAATACCACATATTTTCACAAGA
CCACGAACTGATCGATACGTTTCACGACAAACTGCCTCGTTGGCATTACG
ATATCGAACTTTTGCCCTTCGTGGCAATGAATCATTTCCGTACTCAAGTG
CGCTGATGATCCCGTATGTGTATCGATTTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_114:157067..157448

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046608 ID=TCONS_00046608|Name=TCONS_00046608|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at scaffold_114:157067..157448 (Clytia hemisphaerica)
TCAAAATCGATACACATACGGGATCATCAGCGCACTTGAGTACGGAAATG
ATTCATTGCCACGAAGGGCAAAAGTTCGATATCGTAATGCCAACGAGGCA
GTTTGTCGTGAAACGTATCGATCAGTTCGTGGTCTTGTGAAAATATGTGG
TATTGATGAAAATGACTTGATTGCCGAGCTTGGTGCTCTCGCAAAAGACA
TTGACTTAAAGTCAAATGCCAAGTGATTTAATAAATTTCAACTCAATTTT
CTTTGTGGGGAGTGTAAAGTTAttgattataaaaccaaaattataaaaat
tataaaaagaaaatttcataaaaatttgtatcgtaaaatatttcatagct
TTAGCCaccatatttgtttacattttgtttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029752XLOC_029752Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046608-exon-scaffold_114-1491911889:157067..157448TCONS_00046608-exon-scaffold_114-1491911889:157067..157448Clytia hemisphaericaexon
TCONS_00046608-exon-scaffold_114-1510915933:157067..157448TCONS_00046608-exon-scaffold_114-1510915933:157067..157448Clytia hemisphaericaexon
TCONS_00046608-exon-scaffold_114-1575043694:157067..157448TCONS_00046608-exon-scaffold_114-1575043694:157067..157448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:157067..157448 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.557979	0.599937	0.368219	0.454333	0.276553	1.52975	4.74578	6.66442	4.14104	6.03406	0	0.819467	2.59137	3.63778	3.49919	2.39904	1.10031	1.73571	2.61597	2.28119	2.68383	0.944507	0.7054	0.436134	1.88014	1.37553	0.29417	0.300101	0	0.231904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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