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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046641 ID=TCONS_00046641|Name=TCONS_00046641|organism=Clytia hemisphaerica|type=transcript|length=1236bp
TACTTAAGCAAATCCAATCTTAGCAGCTTAGTAAATAAGGAAACtagata
aggaactttgaggctgaaattctctcgAAAAATTAGTAAGGAACTCAAGG
ctcggagccaagttaaggtttcttataaaaaaacgtgtgcaTACATTTAC
TGACAATCTTTTTCAAGATAGATACAGATATTTCAACAAAAATGCTGAAG
ATATCGACTGGTTTAGCGTTTCTCATTTTTGCAATCAACTTTGAACAAGA
TTACAGTAGTTATGAAGTCAAGTCTTTGGTATCAGCTGAACctgttcaaa
atcaaaaatatgtacATAATGAAATTCAAGACTTTAAAAATCTCGACGAC
GACGAAAGTGATGAAGAAGATGAAGTTCTCGGGAGAGTAAAACGTTCCCC
CGACCCAAAACCCCAACCCAGAGGGCGCGGAGGCGGATTCAGGGGCGGTT
CAAGATATAGTGGTGGGAGTTCTGGATCGAGTGGAGGAGGAAATTTATCG
ACTGGCGCCATTCTTGGAAtcgtttttggaattttaggTGGATGTgccat
tttttggattttaacgGCTTTATGTTGTGCctgaaaaattgacattttca
aaatcttgatgactGATACACTGACCATATGGGAGTTTTAAGCTGTGGGA
TAGTTCaagttataaaatatttcattcaCATAATAAATTTCTTCATTCAA
GTTTAATTTATCTTATTTAAAATGTATGAGTGTCAGAAGACTTTTACAGT
GAAATCGCCTCTCTCTGAGAATACATGATAAACATGACATATAAAAAGTC
GTGCTGCGAAGCGCATATCAAAACGTGCATcgagtcaaaatttcaagcaa
tgTCATTTTTATCGGAATAATCAATAGGGAAAGGAGCGTTATTTcatata
ccgtattacttcgaataagcgcccctcctaaaatccaaaaattttataaa
agcCCCTTTTATAAACGCCCGGTGCGTTTATTCAAGAAAGTTCTATGGTT
TATTCAAGACGGAAAGTGTTTCGTTAAAATGTgatatttaattttcttaa
tcGATCCGTATGTTTTCTAGATTTGTAAAAGTCTGACCCTATTTTTACTT
TTAGTGATATAGGAAACAATGTAAATTTaaagttgtatttttcaaacaag
aataaaaatgaaatttttgtaataaaagaaAGTTTGAATTTATTTGAGTA
AGAGCAAACTATACGAAAACATAGACTTCGTTGGCC Run BLAST on NCBI protein sequence of TCONS_00046641-protein >TCONS_00046641-protein ID=TCONS_00046641-protein|Name=TCONS_00046641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MLKISTGLAFLIFAINFEQDYSSYEVKSLVSAEPVQNQKYVHNEIQDFKN
LDDDESDEEDEVLGRVKRSPDPKPQPRGRGGGFRGGSRYSGGSSGSSGGG
NLSTGAILGIVFGILGGCAIFWILTALCCA Run BLAST on NCBI transcript from alignment at scaffold_116:281693..282987+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046641 ID=TCONS_00046641|Name=TCONS_00046641|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at scaffold_116:281693..282987+ (Clytia hemisphaerica)
TACTTAAGCAAATCCAATCTTAGCAGCTTAGTAAATAAGGAAACtagata
aggaactttgaggctgaaattctctcgAAAAATTAGTAAGGAACTCAAGG
ctcggagccaagttaaggtttcttataaaaaaacgtgtgcaTACATTTAC
TGACAATCTTTTTCAAGATAGATACAGATATTTCAACAAAAATGCTGAAG
ATATTGACTGGTTTAGCNTTTTCAAGATAGATACAGACATTTCAACAAAA
ATGCTGAAGATATCGACTGGTTTAGCGTTTCTCATTTTTGCAATCAACTT
TGAACAAGATTACAGTAGTTATGAAGTCAAGTCTTTGGTATCAGCTGAAC
ctgttcaaaatcaaaaatatgtacATAATGAAATTCAAGACTTTAAAAAT
CTCGACGACGACGAAAGTGATGAAGAAGATGAAGTTCTCGGGAGAGTAAA
ACGTTCCCCCGACCCAAAACCCCAACCCAGAGGGCGCGGAGGCGGATTCA
GGGGCGGTTCAAGATATAGTGGTGGGAGTTCTGGATCGAGTGGAGGAGGA
AATTTATCGACTGGCGCCATTCTTGGAAtcgtttttggaattttaggTGG
ATGTgccattttttggattttaacgGCTTTATGTTGTGCctgaaaaattg
acattttcaaaatcttgatgactGATACACTGACCATATGGGAGTTTTAA
GCTGTGGGATAGTTCaagttataaaatatttcattcaCATAATAAATTTC
TTCATTCAAGTTTAATTTATCTTATTTAAAATGTATGAGTGTCAGAAGAC
TTTTACAGTGAAATCGCCTCTCTCTGAGAATACATGATAAACATGACATA
TAAAAAGTCGTGCTGCGAAGCGCATATCAAAACGTGCATcgagtcaaaat
ttcaagcaatgTCATTTTTATCGGAATAATCAATAGGGAAAGGAGCGTTA
TTTcatataccgtattacttcgaataagcgcccctcctaaaatccaaaaa
ttttataaaagcCCCTTTTATAAACGCCCGGTGCGTTTATTCAAGAAAGT
TCTATGGTTTATTCAAGACGGAAAGTGTTTCGTTAAAATGTgatatttaa
ttttcttaatcGATCCGTATGTTTTCTAGATTTGTAAAAGTCTGACCCTA
TTTTTACTTTTAGTGATATAGGAAACAATGTAAATTTaaagttgtatttt
tcaaacaagaataaaaatgaaatttttgtaataaaagaaAGTTTGAATTT
ATTTGAGTAAGAGCAAACTATACGAAAACATAGACTTCGTTGGCC Coding sequence (CDS) from alignment at scaffold_116:281693..282987+ >TCONS_00046641 ID=TCONS_00046641|Name=TCONS_00046641|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_116:281693..282987+ (Clytia hemisphaerica)
ATGCTGAAGATATCGACTGGTTTAGCGTTTCTCATTTTTGCAATCAACTT
TGAACAAGATTACAGTAGTTATGAAGTCAAGTCTTTGGTATCAGCTGAAC
ctgttcaaaatcaaaaatatgtacATAATGAAATTCAAGACTTTAAAAAT
CTCGACGACGACGAAAGTGATGAAGAAGATGAAGTTCTCGGGAGAGTAAA
ACGTTCCCCCGACCCAAAACCCCAACCCAGAGGGCGCGGAGGCGGATTCA
GGGGCGGTTCAAGATATAGTGGTGGGAGTTCTGGATCGAGTGGAGGAGGA
AATTTATCGACTGGCGCCATTCTTGGAAtcgtttttggaattttaggTGG
ATGTgccattttttggattttaacgGCTTTATGTTGTGCctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046641-exon-scaffold_116-1491911889:281693..281871 | TCONS_00046641-exon-scaffold_116-1491911889:281693..281871 | Clytia hemisphaerica | exon |
| TCONS_00046641-exon-scaffold_116-1510915933:281693..281871 | TCONS_00046641-exon-scaffold_116-1510915933:281693..281871 | Clytia hemisphaerica | exon |
| TCONS_00046641-exon-scaffold_116-1575043694:281693..281871 | TCONS_00046641-exon-scaffold_116-1575043694:281693..281871 | Clytia hemisphaerica | exon |
| TCONS_00046641-exon-scaffold_116-1491911889:281931..282987 | TCONS_00046641-exon-scaffold_116-1491911889:281931..282987 | Clytia hemisphaerica | exon |
| TCONS_00046641-exon-scaffold_116-1510915933:281931..282987 | TCONS_00046641-exon-scaffold_116-1510915933:281931..282987 | Clytia hemisphaerica | exon |
| TCONS_00046641-exon-scaffold_116-1575043694:281931..282987 | TCONS_00046641-exon-scaffold_116-1575043694:281931..282987 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:281693..282987 + |
Blast
The following BLAST results are available for this feature:
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