|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046651 ID=TCONS_00046651|Name=TCONS_00046651|organism=Clytia hemisphaerica|type=transcript|length=2087bp
AAGATTTCAATAATATTTACTTTAAAGAGGTTTAAAAGGAGTAAAAGAAT
TGATCACGTTatcattattaaaaaaaaaacaggtctgtatttttatctct
ttttcaCTTCCGAATTCTTAGAATTCTAGTCTGGCGGTGATCTTCTTTTC
TCTCAaacattttagcttgaaatCTATCTGGTCGAGGCGACCGGACCCCC
TTCAGAACCTACACACAATATAGAAAGGTGTTGTGGAGCAAGAGCAAACA
AAAAAGAGACGTCAATAAACAAACCAGATACAGGAAACACAACAACAAAG
TATCAACAAGGAAAGCGCTCATCAACTATGGTGGCTCCATTTTCCATTCT
ACTAAAGGACAGTCAATCTCAACGTTGAATGAAGAAGACGAAAATCTAAC
CACAGAAGAGTCGTCACGAGATATGTTTGCTGAATGTCACAATTTAAGGA
AGGTCCCTATGGTCAGTGGACCATGTACACCTCGGCCCCGAAGTGGCCAC
CGCATGTGTGCCGATGATAATTGTATATACATTTTTGGTGGTTTTAATCC
AGCTTTTAAGACTTTTAACGAGTTATGGAGGTTTAATACGACAACCGAAA
AATGGAGTCTGCTGCCTGACGATGACGGGTTGGCTCCCAAGTCCTGCGCC
TCTTCTTCTATGGTCATGTTAGGTAGTAACCTATTCGTGTTTGGTGGGAC
TGGCTACCCGTTCGCCAAGACCAACTCTAACGAACTTTTTATGTAcagtt
tgaaaatgaaacgtTGGTTCAACTTAACAGACACTTCAAGTTTAGCCAAT
CGACAGGATTTCGCCAAACACCCGAAagactttataaaaacaaagcagTG
CGGATGTCAGAAGTTTTATGATAGGCAACCAGTTCCGAAATACGGGCAGG
GTATGGCTACTGCACATCAGAAAATCTATATCCACTCTGGAACTCAAGGC
GAGGAATTTACAAAGGAACTTCatagtttttctttaaagacATTTCGTTG
GACAGAGtatgaattttgttttgagcatACGCGAAATGCGCCTCAGCCTC
GATACCGACATGAACTAGCCTCGATTGATAACCGCCTGTACGTCCTTGGT
GGTGCATTACTCAACGAGACATTTAATTTCGATCAACTCACGTCATTCAA
TCTTCAAACTCGAAAATGGGAGCAAGAGGCATGTCAATCAAACAAAGGTA
GTAGCCCGACCACACCTGGAGAGAGCAGACAGCTACCTGTAGGACGTAAA
GCTCATACCTGTGTATCATACAAGAATAAGATCTACATGTGTGGTGGTTA
CAATGCAGTAGAAGGAATGTTGGATGATTTTTGGTCGTTTAATGTCAACA
CCAAAGAATGGAAGCAACACAAGAACCGTACATTTCCGTACCCGGTACAA
TTCCACTCGTCCGCAGTCACTTCATACGGTTGCATGTACATTCACGGTGG
TTTGACAACCAAAGGAAACAGAGTCAGTGACCTACATCAGTTGTGGCTTC
AAGTACCAACACTTACGCGTATGGCCTGGATGAAGGTCGTTCAACAGTTA
AGAGACAATAACCAACTGACTAAAGAGACCTTGATCAAATTGAAGATTCC
CAGACACTTCATTGGTTTCATTGATGATAAGATTGACGTCATAGCTGCTT
GATTTGAGGATTCCCTGggatttttgatttccaaactCAGGATGGAAATA
GCGTTATAGTTGACAGGAGATCTTTACATATTAAATGAGATGTCACTAGG
TATAATCAAATTTTCTAATCAGAGACTTAATTAAAGAACTTCATCTCATT
AACTTGCCATTAAGGAGGATTTTCTATTTCGTGGTCTTATGATTTCAATA
ACAACCCATTAATGTGCGAGTTTGATATGTCAATTGGACAACGTTGTTTT
TCTCTTATCTTTGATGAGATGATATTTCTTTTGTATATAATTCACTTAAT
TGGATTATCATTTGTGATTCTCTGCCTGTTTAAGTGATCCTTTCACCCTG
GGAACGCTTTTCAAGATACCACATTACAATCGCCTTTATAACAATAGTTA
TAATGACTAGGTAGTAGGACCATTTCGAATTAACCGC Run BLAST on NCBI transcript from alignment at scaffold_116:495292..513416+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046651 ID=TCONS_00046651|Name=TCONS_00046651|organism=Clytia hemisphaerica|type=transcript|length=18125bp|location=Sequence derived from alignment at scaffold_116:495292..513416+ (Clytia hemisphaerica)
AAGATTTCAATAATATTTACTTTAAAGAGGTTTAAAAGGAGTAAAAGAAT
TGATCACGTTatcattattaaaaaaaaaacaggtctgtatttttatctct
ttttcaCTTCCGAATTCTTAGAATTCTAGTCTGGCGGTGATCTTCTTTTC
TCTCAaacattttagcttgaaatCTATCTGGTCGAGGCGACCGGACCCCC
TTCAGGTAgcaactttaaatttttttactatataataaccTTCAGTATCT
CTTTCACCAAGTAACTGTTTAATTTTTAGCACACCATCACTGATGATAAT
CATAGGTAGCAGTTCAGTTCGTTCTGCAATTATATCTGCATCTTTGGGCA
ACTAAAATCCTACAGTAGGTAGGGGCAAAAAGTTTACTTTTAATATTAAT
CACTAGTACATGATTTGAGAGCCATTTCAACATTCCATCTTTGAAGCTAT
GACCTTGTTCCTTGTTAAAAGTAGGCAGTAGTTAGGTAATTGAGTAGTTA
CAGTGGAAGATTTGGCAGCTGCGGTGGGAAATCTATCGTGAATGATGTTG
GGCGTCGGGTAAAGCTTGCATCAGGTGCAGGTGCGATGGAGTGAGGAAAA
CTTGCACATATATAggcctcaaatgaatgacctggctggtcattaaaata
caaagttaaattaaaagaaacctgatttacaaaaaatttgcgGCTGGTAA
AAAGTATAAATATCTCCTAAATGGGCTGAAATGGGATGGGCTCTTCCAGT
TAAAGTCAGATAACGTGTGTGTATATTAATATTAAATTTGAGGTTTAATG
TCCAGCCACGTCCAGCAGCCATCGCAACATCTGAATTCCCGCCATCTTGA
TTGAAATTTATGGTCTTGCATGAATTTTTATCATCCAACCACGCTCtttt
accgtgagtggtcctaaatccgacagccctgcctaaatccgatggggtct
ttcaaagatacaaactaaaataatagCAAACTTTTtagctgtgacgcaat
gaagataccaaagtgtcaactaaactgaaagatttgatacactgaaccaa
ttgaaccaaataacagcaattgcttcttatacaaaacatatttttttatt
acaaaattgttaacgatTTAAACACGAGTAACGGATTCaaaataatagag
gtaattatttttacaactcacactttattgatcacattaattgacatctt
gacatacatattgttagatgttttgtttccagAGTTCTTGGAGAGGAAAT
GAAAACATAGAATTTTTCCACAGCAGTTATTTgaggggtcggatttaggc
aaggctgtcggatttaggaccactcacggtattcaTCACCCGCAAATATG
AGATTCTAAAATGGAAGAGTAGAGcagcgagcggagctgcgtagttcatt
tgttttgacattttgctgctttgaatggtcaggcatttgatggctatgta
agtttcctccactgatgcaagttacctgacttcaccaCAGTAACAATTTT
TGCGATATTTGACAACACGAAAATTGAAGATTTCAGCAGATTTGTCATCT
GCCATGGATTCTATCCATCTTCTAGGGAACTAATACCTTTAATAACTGGA
TTCAAGATATTCATGAATTTTGACcgtttttcgtgaaaattagtcCTCAT
GAAAGATTTGAAATTTCAGAATGAGTTAAAccccaaggaaaatgaaataa
tttagtTTAAAACGTGGctgattcatgaaaaaattttctgtgtGAAAAAT
TTAGATTCTTGAGTTACGAGAAAAGACACAATGTCATGTTAGATTAATTA
AAAACTACACTGCCTCAAGCATCACAAACAATGATAAGAGCTTTTGATTT
TCCAGCCCTGTTGACTCTTCCAATTGGTTCAACAATTTTTTCATCCAATG
ATTTAATTTTGGATTATTTTTGGGAAACAATTTATCAGGATTACTAAGac
tgcaaaaaatttttttacttggttGGTAAGATAAGATAAGAATTTTAATA
ACACAAGAAAACATGATCACCCTGGGGTgatatttattaaatttttattt
tcccacCCAAGGGAATTTTTTGTACTTTCCAAGGTGTCGAATGCACTTTT
CCTCACCTGAAAGACATGGTAATATTTTCCTGTGTAAAAAGACTTATATG
TATAAAATTTGTGAAGATCAGAATTAAAAGAACCTTTGTTGTCCTTGTCC
TCAGAAGTGAACTTGTTCACTTTTCGCCTGGAACCATTCAAGCAAATAAA
TACGCTCTTTCAAGCTGCCCAGATTTTACTTTTCCTTAACATGGGCTGAC
TTTCCAGTGAGTAAAAAAAAGTAACTTCAAAAAGTTTCATTTGGATTTAT
AAGCCAAGctctaattttgaaatttccaaaaaataatcCTTAATCAAACA
GTCAATTGCCTCAATTGCAATAGTACTTTTTACtacaattttgatttgaa
tatcacttttcatttttcatattcaGCACTTACAGTCTGaataagaaaaa
atcaagattcAAGCTGAAAAGTTTTGTGCTTATTTATTCATATATCTTTT
CAACACGCATAACTAAAATGTTTTTCTGCTCAAAACATGAACTTTTAGCT
CCGTTTAGCTGTGTAATCCAAATCTAAATTATCATATTTAATAAAACATA
TGGTTTTTAAAACGCTAGTGAAATTGCACAAATTGATATTTGAAAGCATT
AAATTTGGGTCAATAAACATAGTTTTCAAGGAAGAATGAGCGAAAAGTTT
CACTTTGACcctttgtttataaaaaaactgcTAATTAATTAGTTACCAGC
TTTCCTGGTGATTAaaatcaatgaagtataagcccgaagggctagaagtc
aatctccttggtaggatttgaagccaacaaatcctaccaaaattgcgcgg
ccttgagcggctgcctggtttttacacaaatgacagattgaaactaaaat
ttaccgctaaatttcgaaaaaaatatcaatcgtataaacaaaggaattgc
tagattcaatctgtcgtcaaaaatgcggcgcattttttaaggcttcactt
tttcttgcctgagaaaggttagagattgaactcaagcccttcgggcttta
aactcaatgattaAAATTATCCCAAGAGTAATCCTTGACTCATAATTACA
ATTACGTTCTGACTGACTGACTTTATGCCCACTGTGACAGATCCTGATTC
AGAAAAAAGTTTTATGGGACTGAATAATTGTTAAAGTCGGTTTTGTTCTT
GAGCACTTTTGTCATGCCAATGATGCatgtttgaaagaaaaattctcCAA
ACATTCACATTTCTTATTTGTCTATTTTTTATATCTCTGCTTTTACAACT
TAACAAGAATCATATTTATCACAGATAGTCAGTTCAATTTTATGTCCAAT
GTTTAATGTGCTGTAAATTAACCACATTATGTAGGTCCATGAAACTTGTT
TATCTCGGTTTGACTGAGTCAAAATCTTCATTAGGGAGGTCCAATCAATA
TCCAGCTCAGTTAGACCTTATTTGAAATACAGGTTGTTATGACCGACCAT
ATTTTAGttataatatttttgttttctgtaGAACCTACACACAATATAGA
AAGGTGTTGTGGAGCAAGAGCAAACAAAAAAGAGACGTCAATAAACAAAC
CAGATACAGGAAACACAACAACAAAGTATCAACAAGGTTAGTTTTTTATC
AACATTTCTTTTCTTGTTACACTTTTTAGCTTTATACAAGGGTGTACAGT
GTTGACGCTCTATAATTCGACCTTCTATTATTCGATGAACTCCATTTTTC
GATAACATTGAAAGTCaacgtcaacaagaaactctcataaacgacgctct
actatttggTTCACTCTATTATTGATctattattcgatgaaaatccgttC
CCCTCTTGTAAATCGAATTCGCGAGCGTCAAACAACTGTAGATTTTCATT
ATTCACGTTTTATATACATTTTCCATAACTacaacatgtttttttataag
aaaccttAACTTGGTtccgagcctggagttccttatttttctagAGAATT
ACAGCCtgaaagttccttatcgagttccttatttactaaGCTGCTAAGTT
AGGATTTGCTGAGTACAAACTTCTTTATGATATAAATTTagtatattttc
tctttttgacaTATTGAACGTCGTTTCAGCGATATTTTatcatctttttg
tttttaagttaTTGTAATTGTGTGCAAATTCAAGCTTAACTCTTACTGTT
CCTTCAGGTTCCTTAACTTGATTTCTTATTCTGAGCCTGAGCAGTtactt
ataaacgtgttccttataaacgtgtcccttatataaaaaaacgtgtgtcA
TAGTTTAAGACTGCTCAGACGTCTTTAGTGTGAGGTATAAGTATTCTCTT
TCGTATCAAATAAGCTGGGCATGCTACTACTATTTCATAATCGTACCAAT
AATACTGTTAAAGAACCCGGGTTTTTGATTTGTTTACTATGTATATATAA
CACTTTATTTAAGACGACAGAGTTCTATTTTTGTATCACTTTTAAAACGG
TTATTGTTTATATTGGCAAGGGTGCTTAAATTCTCTAGATGAGTAAAGGC
TATTAATAAACACATGCTTGAAATACGTAATATTAGTATTGAAAGTATAC
TCTTATTACCAAATGAAAATTATCACAAGTTCAATCTGTAACTCGAAAAT
AAAGCTGGGTGTCCaatgtaaaaaaaaagtttgtcgcAAATACCTGTTGA
CACAGGTTGACAAAAAATGAATCCAGACATAACATAATGTCTGGAATTAA
AAATCTGTTTTTATTgcgacaaaacaaaaaataaaaatagagaatgaaaa
ctttattattcatcttttattctttatttcattttgctattcacgttttt
ttataagaacatcaatttttttgaagtctttggatgttcttaacttttct
ttttattttttttcagtggacacCCAGCAAAACGGTATGGAACTTTCTTC
TCACCAGCGAAAGTTCAGATTATAAGTTTGTGGTCTTTTCAATGCAGGGC
ATTTTGGCTGACTTTTACGCCCGTTGTGTCCCAGTGCTTTTCAAATAGCG
TACCGCGGTGAATCTAAAAATATCTGCACACACAATTATTTGTTTGTACG
acttgcaatcctttcaatcctTGCGTTATTTGCTCTTGAACgttaaacat
aaaattttaaaataaaggtAAAAACTTTCACGGTTTTCTATAATCATTTC
GAAATGAAATACGTGTCTTTTCTTTTAGAAGCATgtgcaggctcagtttt
ggtacctaaacaatggctctattgtttaagaacaatagaatgctaaacAT
AATAAgagcctgatatagggacagacatttgcttataaaagaaacttgta
tGGGATTGAGACAAATCTGAgttaaagaatttcttttatttctttggggg
tacctgaaaagtgggctgaaaccatgccCTCTTACCTTTTTGAAAGAGGA
TAACGCTTTAAGGGACAGATTAGAAAACATGCATAcaggctttttttata
agaattcactttataagaatgtccatgatgaaaatggccaaaaaattaag
aataatgctaagaatattacctgcatggaattttgctactcaagctaaga
atgccattcttagagcattttcgattataaattgtcaattaccctcaagt
aaggctcacttctttcacaaaaatgccattttatgattgagacgtatgta
ctaaatgttaaatctagtctgaattaggatcctaacctaagaatgctgta
agaataattttaggatgattttcccaaaaaagttacgaatatccatgatg
aaattgatttacaccactctttctccctggatttctccacttacccttga
tccttctcttagttgctgagcatcaagcagagaggcatcaagtaccattt
tgggaatcttTGGTATGACCCGGCTGGGGGTTGACCCCACAACCTTGCGa
accgtagccggatgctctaccactgtactacggtcgcttgTATATAAAAT
CACCGCATGACCTCAAATAATTAAACAATCGTTTAATTTGTTATGTTTGA
TGTTTAATTGTTAATAATTATGCTGTTGTTCGATCCAGATTGATGCTATG
ATGTGATGaaattcatttgtttttttaacaGTTTTGACGGAGGTGTGTTT
GTGGGAGAAAAATGGAGGATAGATATTCTAACAACGATGGCTGGAATAGT
TGATGGTTATTGTATATCCTCTTTGtgtatttttttgtgtttagTGTACA
GCTTCGGTTACCATTGTAATTTCTTCCAATCAAAAATATGGCTTACCTTT
TCCAATACCTCTTGCGCCCATTCCAGAAGAAGGGATGAGTTACGTCACGC
TCATTTTGGACTGGATACCGCCATAAGGGACCCTGTCCAGTTTCAGCTGG
CGTTAATTTTCCTTCTTTTCCAAGCCGAGTAATATTTTCTTTAGAAAGTC
TGCcaaaatgtttcttttattttcagcataattgtttctattgttttttt
gaCATAAATTTAGTCCCTCCCACAGTTCTTATATAGAATAATGGCAGACA
GAAATCAATTTGTTCGTACAGCGTAGGGATACGTGATTTGCTAGCAAGAT
GgaaaacaaatacaataatcAAAAACCCATCAAAAAGAAACTATTTGTGC
AATTGGTTTCAACAATGAGTTCCTGTACTAATATCTTTTAAAGTCATTTA
GGAAATGTTATCTCTGATATATTGCTTCCGAATGGTCCAAACAAATCAAA
TTTTACTATTTAAGGCAAAAAATAGTATAATACACTGATTTGCTTTTTTT
GGGATTGCACTTTTAGGATAAAGGTTTCTTTCCAGTAAAATTAGGTCGAT
AACGTTCGGTTGttataattgtttttaataTACTGGCTATTTTTGTTGGT
ccttttaaaggtttttcttttgccatgagtgttcccgtttcataacCATA
GACCTTTTTGAATTGCTCTTATTTTCTCATTCATTGTGTTTTTTGAGCCT
CACTcacattttaagaacaatttgattTTTGTACAAAGCGAAAAAGTCAG
TTGTTATGTGCTTGCACTGCATTCCGTAGCCTTTTAAGACACAGacttaa
agattttgttttgattgaaagttttgatgatgctgatgtagtaaaaccaa
gtgcgacaagattagaaaaaggttttgaaaaaatgaaactaCATTGAGta
aaaaaacattcctcaaacaaagcccgggggggggcactccagtgatctac
cgtacgtgcggcccttaagggtaggttttttggactttggaaagtgcact
gtaagggttgatttgtgagcaagtgggaataagtgcactgtaagggttga
tttgtgagcaagtgggaataagtgcactgtaagggttgatttgtgagcaa
gtgggaataagtgcactgtaagggttgatttgtgagcaagtgggaataag
tgcactgtaagggtgtaaaatttgagaaaataccaaattttgaggtaaaa
tttgagaaatttcaaaatattttgccctgaaaagggcactataagggtcg
atttcagccaaatttttcctgcaccgTAAGGGttcgattttagagacctg
atttttggccgagcgtacggtcgttttcaaaatcgagtgccccccccctg
gaaagggacttactgatactctttcgaatgtttttatgtttatgataaat
agaacgttttctatcttataatcaaaacGATTATAAATTTGttcgaaatc
aactttgctatttttggacctaccttaaggtagtcctttaaattaaccct
tgtccgttcgtccgttcgtccgtccgtccgttcgttcgtctgttgccagc
ttttctcgggatcggctcattagttttttctaattttttgcacaatgatg
caaaatgacaatacccaaaatgtgacggagcccgattttcgaaaaaaaaa
attttccggccaaaaatggcggaagtatgccggaaaaactggtttttcgg
cattttctcgagatttcatcattagttttttctgattttttgctcaaaga
tgcgtattaacaatacccaaaacatggcctagtctgttttttgagaaaaa
attttttccggccgaaaatgccggaaatatgccggaaatcgccgtttttt
tggattttcattggactttttccatataattggttgttttttcattcaaa
aacattattaatagcaatgcccaccatcaagcatgtttcaattttcaata
aaattgatttttgaagccggaactttctaaaaattgccggaatagccgat
tttcgccggaaaaacagtatttcttgaatttcttgagccctactttatat
tttttcatgacattttgcacactgatgcaaaatgtcaatacctaaattgt
gacggagcccggtttttgaaaaaaattcatttccggccgaaaatgccgga
aatatgccggaaacactggtttttcggcattttctcgagattccatcatt
agttttttctgattttttgctcaaagatgcgtattaacaatgctcaaaac
atggccgagtccgatttttgagaaaaacattttccagcggaaaatgccgg
aaatatgccggaaatcgccgtttttctagattttcatttgactttttcct
tacaattggttgttttttcattcaaaaacattattaatagcaacgcccac
catcaagcatgtttcaattttcaaaaaaatcgattttgcttcccttccct
cttcccccatcaacaatcaatgagaaaatttaatgttttatgcattttcg
caaaacgctatatcgtctgactgattcttttaatttttctccttattgcc
ttattatctagctttcatcatcagtaggtaggtccattcagcatgttgct
tgttttgtttacaaaagcaatagaatgtgaggtcatagctttaatttatc
tgactcagcatgaagacacggcctaaaataagctccttttattcccgTAG
AAAACCTTTAAGACATTTTGGAGATACTTGATGCCTTAGTGCAAGATATT
TGGCATCAACCTCTATATTGGAGTTGCTAAATTTCTTAATGTCTTGATGC
CCGTTTCGCTGGAAAAAAAGTGGCGCGTCCTTAGTCTGTGTAGCCTTGCA
CGATCATCACAGACTGATAAGATTTGCACACAATTTATTAAAATCCATGC
AATCCACGCAGTTTAACAACGTAGACAAGCTCTTTTTGCATATGTCTCGG
TGACGCGGTGGAAAAAACTTTTATCCATAGGACTTCCAATTTGGTCGACT
AAAAATATAACGCCAATGACCTTgctccaatattttttttaatttgacct
AGTCGGTGTATTAAACATAAATCAacacattttattttgagaCTAAAGGA
ATTTGATGTACCTGAAAATAGCTACATGTTTagatattctttttttaaag
ggtATCAGATTTGTAGATAGGTAACTAACACTTTCTTTAACTATACCCCA
ACTCATTGCGGTTTTTGATACGTTCACAACGGCTTTTTATTGATGTCATT
GTTTAAAGTAAGatcgaaatataaaaaaatggtatacataaaatgaaaaa
ttcggAAAATGATACCTCATCGTAAACATGACATCATTTAGTGTGACCTA
GctctttccattttttttcgTCAAGAGTATCAATCCACATGAACTTGAAT
GCATACGGCGTTTACgaagaagttttttctttcacgGATCTGTCTTGGAC
ACAGCAGAACCGTTATAATCTTCTGACTACTTGACCTATAAAAGTacaaa
cccggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGGGGGAGTAATAGGGTTAGAGAATGTGGATATGTGCGG
ACCAGGCCTCCGGAAAAAGACCCTTGAGACAATTTTATTTTAGTGAGATA
ATATCCTAATCTTGGAGAGATccttttgatattttcaaaaattggagaAA
TCCCGGCGCTTAAAGAGACTATTTGAGACTTATGTACCGTCCACcgtttt
tttgttcattttgtgaaaaagtcacCTTTAGAGAGACAATTTTATTTTAG
TGAGATAATATCCTAATCTTGGAGAGATccttttgatattttcaaaaatg
ggAGAAatcccgacccttagagagactatttgAGACTTACTTAAGGACGG
TacaccgttttttttttttttttgaaaaagtataaATAGCTTTCTAATGG
AACCAAAACCCTTGTCTAGCCCTTCCATTGTCCCTTCAGTTGGACATCAg
tgtaaaatactctctataattcgaatattcCTCTgaggggccattcaaaa
agtacgttcgtcgccgagggggggggagggggtcagcaAAAAAGCGAACG
AAAACGAACGGGGGGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGG
TACTTCAAAACGAACGCTGACgaacaaggggggagggggggtctgaaaat
agggaaatttggacgaacgtactttttgaatggcccctaatccaaagaaa
aaaatatagtCCCATGAAGATAGAATTAGAGAGAGACAACTGTGTATAAT
GGAGTAAAGGCCCTAATAATTCTTACTGTAAGGAACTCCATCCTCtgaat
gggctattccagaaatagtctgtacccctatgttgaggaggtgtgacgtc
cagggtggtctggaaaataaaaaatccaatggTCTGGTTatttgaatgat
aaaatccggggtggtcagtataacgaggtcgaaaatccaaggtggtccaa
agaaatgagagaaaaaaaaaaccaacatagggggtacaaattttttctcc
GAATAGCCCAATCGTTTAtatacaccctcttctcacagacccactgggtc
CCCTTCCCACTGGccaaaatttggccaaaatatcgtctccagtggaaaat
tatcctccaatttttgtccccattgaaaataaccAAACAAACCAAACCTC
ACTGCAAAACATTATGCTAGctttcccactgaattttctgacttgaaaat
aaaagaaattaaatccccagccataaagaatatgggaatatcaatcccca
tcgagtttcattccgttatttttacccccactggctgaataaatcctacc
gggtctgtgagaagcgGGTGTTCATTTGGTATTGAAACTTTGGAAACGTT
CAGATACAAATTCCCTATGACCTAGATTTATCCTGTTCTTCTTTAGTAAA
AAGTTTTGGAGAcgaattttttgatgataggGTCGAATACAAATTCCCTA
TGACCTAGATTTATACCGTTCTTTTTTAGTAGAAAGTTTTAGAGACGAAC
ACTCTTATAGAAGGTGATGGATGATAAACGATACTTCTTATATCAAAAAA
TTGTCGAGACACTATACAGTTTCTAAAACGAGTGCGATAAGTGGCTTCAC
GAATCATATTTCGTGAACTTTTTTTATAGATATTTTTAATGAAGTGTATG
ATATGTACGAACGTATATAAAAGGAGacttttttgtacaaagatatcatt
tctaaaaatctttcACTCAAGAAGGATAGCATGGACTCGCATGGACTACT
TGATGATTATACGTAACAGTTCTCTTTTATTTGGCACACGATGTTGTTTT
GACGGTGTGTGGACCGGGGGAAGGGTTACTTAGACAAAACAGGTGCCAGG
TATGTGTGGGCCATAAGGTTCCCTTTTTCTAGGGGTgcaaaaatcgttaa
aaagtAATTCAGGGTCATGAATTCTTGAATTTtcgactaaaatttgaaat
ttttgctgaaattttgtgGAATTAGTCTCTATAAGGGTATAATTTCTTTA
AAGTCGCTGCAAAAGAAGATGGGAAGGGATTGTTGGCCGCATTCAATCCG
AAATCTGTAGTTATGGTTAGCTCTTAGTGAAGGTTGATAGTAGCTAAGCA
AAGTCGATACTTGCTAATGCTTCTTGCTTTGCAGGAATCTTAGAGACTGT
TCAActaacgtttccagaccatCTTTAAAAGAAGACAAAActatgaaaaa
caacaaaatgaacGACAAGAGACGACATAGCTGGAAACACAAGATGTCGT
AGCTTGCTTAGCCAGGTAGACAGGAGTTTGtcctttaaagcttaaaaata
ttttaaagttgtGTAAGCAGAGTGCACGGTTTGGTTTATTGAGCGTGCAT
ATCGTAAGTAAGTTAAGTAACTTTAAAACTTCTTCAGTTGCATAAGGTTT
CATATTAAGACTGCGAGATAAACTACTCTTTTCTTTTTAgaatcaaaaaa
tgttttctttaaaagcatttcattgttattttctttGAGATTATTACGTT
TTATTCGTAATTTATTCCGTTGTATTAGTCGAAGCATAGGTAGGGGCAAG
GTCTAAAATTAATTGTCTCCAATAATCGTAACCCTAAAATTGGAATCTTA
TACGATAAGGACTTCAGTTTTGAATGTaaataactatgttttcatttttt
aaagttgaGTGCTAATGGAAGAAAAGTTGGTTGTTAATAAAACGAGATAA
TGATCAGGGATTAAAAATGGAAATGCAACCTACACGTAATTCTAATAAAT
TGTCCCCCATTCTGTTCGTTTTGAAGAAGTCTTTGGTATTagtataaaag
aaaaagttgtTTAGGTCAATCAATACATAGTTTATTAAAGAGAGAGTCTA
CTTGAAGGTCCCATGGCAGCAGCGAATTTGAACCTGTCACGAActgggat
tgaaccagggaccttcagatcttcagtatGAGAGACGAAACAAAGTTAAT
TTCACAAGTAATCGTCAATACAGAGTTTGTTTGAGAATGGTCTACTTGAA
GATTCATGGGTGgccttaaaaactttttttaacactagattttagatttt
atagaaattttaatgtaagcatgttttttttttatttctggaGGTTTAGG
GGGATGTTCGTCGTTCATTTagtgctacacgtttttttcataagaacaaa
ctatatagaaCAAACTataggctttgatggccaaaatgttaagaacaagt
taataacattttaaggctttgtgaacTCTAAAACggtcaatttcttaaga
aaatagacaaaaatactcacaaaatggtgaaaataagaacatgttaagaa
catttttaggcttaaaactcaaaaagttaagaacatcatccaaaggcttc
caaaattttgcatgttcttacaaaaaaaaacgtgtataagatTTTTCTAA
TATAAGTATTGTCTTTTTGGAATTTCGCATCTTGTACTATTTTTGgtgtt
tgatttttaaaattctatCTGCTAATTTTGTCATCCTCGATTGGAATTTT
CAAGGAATGCATTTGAAACTTAAGAAatcaatacactttttttatattag
AATGTCAAAATGTTTAGAAGCTTGCTTTCGATCTTTCcttaaaaatgttg
tttcagcatttttgtgagaatacttttgtttttaattttctaagTAACTT
TTGGTCTCGAAATCCTGACTTATAAAGATAGTGAAATACAATAATGCCCT
GCAATGCCCAACAGTCCCTGGttttaatagtttttttttaaacctttatt
ataaaggtataaaatgatattcatgacgtaatgttttcggAAAGACCCCG
TTTTTTTtgacagtacacgtttttttttttataaggaacacgtttataag
gaagtcgaggctgaaaatggttcaaaaaataaggaattgttaaggaactg
ctcaggctgagaataagtggatttgaaaataatgtaccttatttggactt
atttgaccaaattttgatctttcaaggagcaaaaagttcaaaatttccta
tgtagtaaggaactcgataatgaactttgagactgaaattctctgtaaaa
ataaggaactccaggctcagagcaaagttaaggttccttataaaaaaaaa
acgtgtagtggcaaattttatacaatttttGTCTAGTATAAATTTGCTAC
TACAGGCTAAAACTGGGGTATtaccgtagaaaacattacgtaatgaatat
catgaaaTTAGACTTGACTTCACAGGTTTTAAGCCCTTTTAATAGCTATT
AAGACTTCAATAAACTGGTTGTACCTCTTTAATGACCCCCTATTACGATA
ATATTCATTTTAAAAGGTAGACCCTTTGAAAAAGGAGGTCTTTTGTAATC
ACATATTTTCTATATAGAGATTGACTCGACAAATATTTAGATAATCGTGT
TTCAATATTAGTTTGTACATTTTGAGTCAACAATGTTTCTACTACTGttt
ctgtttttttgtttgacgatgtttagtttttttttaacatatATTCCATA
TtggaaatctttaaagaaagaattttataagaattgtCTCCcgtttttta
aaataaaagtttgGATTTTAGTTTAGGTTTAGGACAATgacttaaaaaat
ttgaaaattaacttTATTCTCTAAATCAAAGCTTCGACCTATCGTACACA
AACACTCAAATTTCGACCTTAAACAGATTTTTGCTCGATTTTGTCTCCTG
AAGACTCAAAGTGGGATAATattgctaggaatttgagaaaaaaatctcat
ttgcttattAGTGGGGAAGCCGGGCCTGCCACTTTCTTGATTCCACTTCT
TTTGCTGCACTCTGTttgattttcagaaatttgaatAGATTTAAATCGTT
TAGGACTTCATCACCTCATTTCTTTGCAATTCGAAATACAGTAGAGCGTC
AATTGCACTGTTATAATTTTTACAGGTGAAAAATGTCCagaaacacaaga
aaaaaaaaactagttTTAATTGTCCACATAAAGCAGCCTTTGTCGAATAG
AATTTACTTAAGACTTAGACTAAGCTCgagttttttaaatcaatcattCC
GTTTTTAAACTGTGCTCTTAGAAACAGAAAAATGTTGGAAGGAGGTCCTA
TGTTTGAActtctataagaacataagctGATGTTAGAACATCTTAGAGAA
TACATAATATTGAGAATAAGTTAAGACTCTGAAGGGGGAAAATTCAAATA
TGGAATTTTCTTGACAATACAGATTCCGGTTTCAACAATTTGTCTGGAGC
TTTCAATATCCGAACGTTAAATGACTGTAGcttcttataatgttcttaaa
aaaattacagaCAAATTCCTGGGCTTGAACTTTGTTATATATTATTGATT
TactgttttgatattttgagtttgaccgactATAAACTGTTAACTTTGTT
AATCTAACAGTTATACGTTCATATCATATTATTGTTATATATAACCTGAT
AATCATAATCCCCTTCTTTCTTTCATTCACCAGTGTACAAAACGTTTAAA
ATCAATAATAAAATTAACAGTACAAGACAACTATATCTTGTTGAATAAAT
CAAATAATAGAAACAATAGAACCAGCAcacacaaaaaaatcataacaaat
aGCCAACAGTGGaattgaacaaaatttttttttcaacaaagcTATGAAAA
CATCGTTTCTACCTTCATATCTCAGGAAAGCGCTCATCAACTATGGTGGC
TCCATTTTCCATTCTACTAAAGGACAGTCAATCTCAACGTTGAATGAAGA
AGACGAAAATCTAACCACAGAAGAGTCGTCACGAGATATGTTTGCTGAAT
GTCACAATTTAAGGAAGGTCCCTATGGTCAGTGGACCATGTACACCTCGG
CCCCGAAGTGGCCACCGCATGTGTGCCGATGATAATTGTATATACATTTT
TGGTGGTTTTAATCCAGCTTTTAAGACTTTTAACGAGTTATGGAGGTTTA
ATACGACAACCGAAAAATGGAGTCTGCTGCCTGACGATGACGGGTTGGCT
CCCAAGTCCTGCGCCTCTTCTTCTATGGTCATGTTAGGTAGTAACCTATT
CGTGTTTGGTGGGACTGGCTACCCGTTCGCCAAGACCAACTCTAACGAAC
TTTTTATGTAcagtttgaaaatgaaacgtTGGTTCAACTTAACAGACACT
TCAAGTTTAGCCAATCGACAGGATTTCGCCAAACACCCGAAagactttat
aaaaacaaagcagTGCGGATGTCAGAAGTTTTATGATAGGCAACCAGTTC
CGAAATACGGGCAGGGTATGGCTACTGCACATCAGAAAATCTATATCCAC
TCTGGAACTCAAGGCGAGGAATTTACAAAGGAACTTCatagtttttcttt
aaagacATTTCGTTGGACAGAGtatgaattttgttttgagcatACGCGAA
ATGCGCCTCAGCCTCGATACCGACATGAACTAGCCTCGATTGATAACCGC
CTGTACGTCCTTGGTGGTGCATTACTCAACGAGACATTTAATTTCGATCA
ACTCACGTCATTCAATCTTCAAACTCGAAAATGGGAGCAAGAGGCATGTC
AATCAAACAAAGGTAGTAGCCCGACCACACCTGGAGAGAGCAGACAGCTA
CCTGTAGGACGTAAAGCTCATACCTGTGTATCATACAAGAATAAGATCTA
CATGTGTGGTGGTTACAATGCAGTAGAAGGAATGTTGGATGATTTTTGGT
CGTTTAATGTCAACACCAAAGAATGGAAGCAACACAAGAACGTAAGTGTC
TCTAttagattttaaggcttcatttcttcttccatctttctacacgtttt
ttatgagaacaatgacttggatggccaaaatatcaagaaaaaattGAGAA
CGATTTTAAAGGCTTGGTCGACTCTGAAAACCTCCGATTACAaaagaaaa
tggataaaaatactcacaaaaaggtgcaaataagaacatgttaagaacat
ttttaggccttAAGCTAGAAAAGTTAAGGACGTCCAAAGGCTTCAATTTA
AGAAGCAAAATCTTTCATATTTTGAACCTTAAAGCATCATCACGGCAGTC
TCTGTATTTGGACATTTTGATCTCTTAAATTATATCTTACTATTCTCTTC
TGATCTTTTTCTAGCGTACATTTCCGTACCCGGTACAATTCCACTCGTCC
GCAGTCACTTCATACGGTTGCATGTACATTCACGGTGGTTTGACAACCAA
AGGAAACAGAGTCAGTGACCTACATCAGTTGTGGCTTCAAGTACCAACAC
TTACGCGTATGGCCTGGATGAAGGTCGTTCAACAGTTAAGAGACAATAAC
CAACTGACTAAAGAGACCTTGATCAAATTGAAGATTCCCAGACACTTCAT
TGGTTTCATTGATGATAAGATTGACGTCATAGCTGCTTGATTTGAGGATT
CCCTGggatttttgatttccaaactCAGGATGGAAATAGCGTTATAGTTG
ACAGGAGATCTTTACATATTAAATGAGATGTCACTAGGTATAATCAAATT
TTCTAATCAGAGACTTAATTAAAGAACTTCATCTCATTAACTTGCCATTA
AGGAGGATTTTCTATTTCGTGGTCTTATGATTTCAATAACAACCCATTAA
TGTGCGAGTTTGATATGTCAATTGGACAACGTTGTTTTTCTCTTATCTTT
GATGAGATGATATTTCTTTTGTATATAATTCACTTAATTGGATTATCATT
TGTGATTCTCTGCCTGTTTAAGTGATCCTTTCACCCTGGGAACGCTTTTC
AAGATACCACATTACAATCGCCTTTATAACAATAGTTATAATGACTAGGT
AGTAGGACCATTTCGAATTAACCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046651-exon-scaffold_116-1491911889:495292..495496 | TCONS_00046651-exon-scaffold_116-1491911889:495292..495496 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1510915933:495292..495496 | TCONS_00046651-exon-scaffold_116-1510915933:495292..495496 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1575043694:495292..495496 | TCONS_00046651-exon-scaffold_116-1575043694:495292..495496 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1491911889:498873..498977 | TCONS_00046651-exon-scaffold_116-1491911889:498873..498977 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1510915933:498873..498977 | TCONS_00046651-exon-scaffold_116-1510915933:498873..498977 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1575043694:498873..498977 | TCONS_00046651-exon-scaffold_116-1575043694:498873..498977 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1491911889:511267..512332 | TCONS_00046651-exon-scaffold_116-1491911889:511267..512332 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1510915933:511267..512332 | TCONS_00046651-exon-scaffold_116-1510915933:511267..512332 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1575043694:511267..512332 | TCONS_00046651-exon-scaffold_116-1575043694:511267..512332 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1491911889:512706..513416 | TCONS_00046651-exon-scaffold_116-1491911889:512706..513416 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1510915933:512706..513416 | TCONS_00046651-exon-scaffold_116-1510915933:512706..513416 | Clytia hemisphaerica | exon |
| TCONS_00046651-exon-scaffold_116-1575043694:512706..513416 | TCONS_00046651-exon-scaffold_116-1575043694:512706..513416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:495292..513416 + |
Blast
BLAST of TCONS_00046651 vs. Swiss-Prot (Human)
Match: KLD10 (Kelch domain-containing protein 10 OS=Homo sapiens GN=KLHDC10 PE=1 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 1.822e-71 Identity = 138/414 (33.33%), Postives = 213/414 (51.45%), Query Frame = 3
Query: 417 RDMFAECHNLRKVP--MVSGPCTPRPRSGHRMCADDNCIYIFGGFNPAFK-----------TFNELWRFNTTTEKWSLLPDDDGLAPKSCASSSMVMLGSNLFVFGGTGYPFAKTNSNELFMYSLKMKRWFNLTDTSSLANRQDFAKHPKDFIKTKQCGCQKFYDRQPVPKYGQGMATAHQKIYIHSGTQGEEFTKELHSFSLKTFRWTEYEFCFEHTRNAPQPRYRHELASIDNRLYVLGGALLNETFNFDQLTSFNLQTRKWEQEACQSNKGSSPTTPGESRQLPVGRKAHTCVSYKNKIYMCGGYNAVEGMLDDFWSFNVNTKEWKQHKNRTFPYPVQFHSSAVTSYGCMYIHGGLTT--KGNRVSDLHQLWLQVPTLTRMAWMKVVQQLRDNNQLTKETLIKLKIPRHFI 1613
R F + + ++P + G P RSGHR AD+ +Y+FGG+NP + F ELWR++ T W + DG P+ AS S+V+ G+NL VFGGTG PF ++N N++ + ++K KRW L+ C+ ++P YGQ MA + +Y+ GT G ++ +LH L T WT+ + + + P+ RYRHE+A R+Y+LGG ++ +++ ++NL+T WE+ A T P E P R+ H+CV KN +++CGGYN E +L D W N+ T +W + T P PV FH +AVT GCMYIHGG+ + R L ++WL VP+L +AW K++ + L++ L+ L + + I
Sbjct: 66 RRRFIQSCPIIRIPNRFLRGHRPPPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQM-GTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLS-------------------------CR---GKKPSRIYGQAMAIINGSLYVFGGTTGYIYSTDLHKLDLNTREWTQLK-PNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIA---------TKPHEKIGFPAARRCHSCVQIKNDVFICGGYNG-EVILGDIWKLNLQTFQWVKLP-ATMPEPVYFHCAAVTPAGCMYIHGGVVNIHENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANLSRTQLLHLGLTQGLI 438
The following BLAST results are available for this feature:
|
