TCONS_00046722 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046722
Unique NameTCONS_00046722
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046722 ID=TCONS_00046722|Name=TCONS_00046722|organism=Clytia hemisphaerica|type=transcript|length=549bp
GACCGAACCAGCTGCGGATGTCGGTGATTGATTTCGGTGTCGGAAAATTA
CGTATTGCATCAGTGTATTTCGGGAGTGGTTCAATGGACGTATCTGTAAT
TCGGAAACCTGCAAAGTCCACAGTACGTTGGGCAAATTGAAACTTGTCTG
GGTTCATCGTAATTCCTGCTCTACCAGACGTGGTAGGCATTTCGAAGGTT
CTCCACCAATGTTCCCTGAGAGATGCGTCATGATGAAGAACGTCGTCAGT
GACACGCTCCTTCCTTACAAAGTCCGATAATATCTGATCAAATCGGCGGT
TGTATCCGTCACCGGACCCGGAGAACCCTTGGGGTGTAGCACGATACCTC
CAACGACCGTAGGGTGTAATGAATGTGGTTAGATGCTTGTCTGACTCGCG
AAGAGGGACGCTATGGAAGCCGTTCCATGCGTCGTTTACGGTCTTCCAGG
TGTTGGGCGGTACACGTCTAGCAGCCTGGAATGGAGATGCAGTGGGGAAA
GTTTCTCGTTGGCAATGTTTGTTCAGAGGAGATAAATCAACAGTCCTCC
Run BLAST on NCBI

protein sequence of TCONS_00046722-protein

>TCONS_00046722-protein ID=TCONS_00046722-protein|Name=TCONS_00046722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
RTVDLSPLNKHCQRETFPTASPFQAARRVPPNTWKTVNDAWNGFHSVPLR
ESDKHLTTFITPYGRWRYRATPQGFSGSGDGYNRRFDQILSDFVRKERVT
DDVLHHDASLREHWWRTFEMPTTSGRAGITMNPDKFQFAQRTVDFAGFRI
TDTSIEPLPKYTDAIRNFPTPKSITDIRSWFG
Run BLAST on NCBI

transcript from alignment at scaffold_116:1..549

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046722 ID=TCONS_00046722|Name=TCONS_00046722|organism=Clytia hemisphaerica|type=transcript|length=549bp|location=Sequence derived from alignment at scaffold_116:1..549 (Clytia hemisphaerica)
GGAGGACTGTTGATTTATCTCCTCTGAACAAACATTGCCAACGAGAAACT
TTCCCCACTGCATCTCCATTCCAGGCTGCTAGACGTGTACCGCCCAACAC
CTGGAAGACCGTAAACGACGCATGGAACGGCTTCCATAGCGTCCCTCTTC
GCGAGTCAGACAAGCATCTAACCACATTCATTACACCCTACGGTCGTTGG
AGGTATCGTGCTACACCCCAAGGGTTCTCCGGGTCCGGTGACGGATACAA
CCGCCGATTTGATCAGATATTATCGGACTTTGTAAGGAAGGAGCGTGTCA
CTGACGACGTTCTTCATCATGACGCATCTCTCAGGGAACATTGGTGGAGA
ACCTTCGAAATGCCTACCACGTCTGGTAGAGCAGGAATTACGATGAACCC
AGACAAGTTTCAATTTGCCCAACGTACTGTGGACTTTGCAGGTTTCCGAA
TTACAGATACGTCCATTGAACCACTCCCGAAATACACTGATGCAATACGT
AATTTTCCGACACCGAAATCAATCACCGACATCCGCAGCTGGTTCGGTC

Coding sequence (CDS) from alignment at scaffold_116:1..549

>TCONS_00046722 ID=TCONS_00046722|Name=TCONS_00046722|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_116:1..549 (Clytia hemisphaerica)
AGGACTGTTGATTTATCTCCTCTGAACAAACATTGCCAACGAGAAACTTT
CCCCACTGCATCTCCATTCCAGGCTGCTAGACGTGTACCGCCCAACACCT
GGAAGACCGTAAACGACGCATGGAACGGCTTCCATAGCGTCCCTCTTCGC
GAGTCAGACAAGCATCTAACCACATTCATTACACCCTACGGTCGTTGGAG
GTATCGTGCTACACCCCAAGGGTTCTCCGGGTCCGGTGACGGATACAACC
GCCGATTTGATCAGATATTATCGGACTTTGTAAGGAAGGAGCGTGTCACT
GACGACGTTCTTCATCATGACGCATCTCTCAGGGAACATTGGTGGAGAAC
CTTCGAAATGCCTACCACGTCTGGTAGAGCAGGAATTACGATGAACCCAG
ACAAGTTTCAATTTGCCCAACGTACTGTGGACTTTGCAGGTTTCCGAATT
ACAGATACGTCCATTGAACCACTCCCGAAATACACTGATGCAATACGTAA
TTTTCCGACACCGAAATCAATCACCGACATCCGCAGCTGGTTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029808XLOC_029808Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046722-proteinTCONS_00046722-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046722-exon-scaffold_116-1491911889:1..549TCONS_00046722-exon-scaffold_116-1491911889:1..549Clytia hemisphaericaexon
TCONS_00046722-exon-scaffold_116-1510915933:1..549TCONS_00046722-exon-scaffold_116-1510915933:1..549Clytia hemisphaericaexon
TCONS_00046722-exon-scaffold_116-1575043694:1..549TCONS_00046722-exon-scaffold_116-1575043694:1..549Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:1..549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.313039	0.50877	0	0.577938	3.19732	2.22393	3.15927	4.86002	2.48984	10.0876	2.61725	2.65509	6.12956	5.65661	0.869512	1.21322	0.512044	0.802882	0.332767	0.812506	0.50196	0.295258	1.0095	0.641023	5.08786	7.76711	0.757037	0	0.115816	0.353995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top