TCONS_00046741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046741
Unique NameTCONS_00046741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046741 ID=TCONS_00046741|Name=TCONS_00046741|organism=Clytia hemisphaerica|type=transcript|length=323bp
GCCGATCATACTTTTAAATATCAAAGAATTTAACTAATCATTTAGTTCAT
AAAAATCAGTTTAGATAAAACAAAATACCTTCGAACTGCGGATAAAATAA
TAAGCAGCTTATAATGTAAATCTATTATGCCATTGACATAACGAGTGAAA
GGAGATTttcttttaaacgttttaattttatataagaaatttaaaatctA
GCAAAGCTTGACAAAACACTATTTTAAAAGGGTATGGAAAATAAATaatt
ataaatatatttttcaggGAGTTTTACTTTTATACAGACTACCAGCATAC
TATAATTAACATAACATGCCAGG
Run BLAST on NCBI

transcript from alignment at scaffold_116:451772..452094

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046741 ID=TCONS_00046741|Name=TCONS_00046741|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at scaffold_116:451772..452094 (Clytia hemisphaerica)
CCTGGCATGTTATGTTAATTATAGTATGCTGGTAGTCTGTATAAAAGTAA
AACTCcctgaaaaatatatttataattATTTATTTTCCATACCCTTTTAA
AATAGTGTTTTGTCAAGCTTTGCTagattttaaatttcttatataaaatt
aaaacgtttaaaagaaAATCTCCTTTCACTCGTTATGTCAATGGCATAAT
AGATTTACATTATAAGCTGCTTATTATTTTATCCGCAGTTCGAAGGTATT
TTGTTTTATCTAAACTGATTTTTATGAACTAAATGATTAGTTAAATTCTT
TGATATTTAAAAGTATGATCGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029826XLOC_029826Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046741-exon-scaffold_116-1491911889:451772..452094TCONS_00046741-exon-scaffold_116-1491911889:451772..452094Clytia hemisphaericaexon
TCONS_00046741-exon-scaffold_116-1510915933:451772..452094TCONS_00046741-exon-scaffold_116-1510915933:451772..452094Clytia hemisphaericaexon
TCONS_00046741-exon-scaffold_116-1575043694:451772..452094TCONS_00046741-exon-scaffold_116-1575043694:451772..452094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:451772..452094 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.620874	0.644784	0	0	0	0.239436	4.96191	2.76922	2.10608	2.2013	1.78398	0.973138	0.668206	0	2.13347	0.910757	0.345389	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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