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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046769 ID=TCONS_00046769|Name=TCONS_00046769|organism=Clytia hemisphaerica|type=transcript|length=2864bpRun BLAST on NCBI protein sequence of TCONS_00046769-protein >TCONS_00046769-protein ID=TCONS_00046769-protein|Name=TCONS_00046769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=614bp MEEDSDYGSETPSALNSTSQPKSNSLGSTPSNGSGRRGGSRSRKKRYSHLRun BLAST on NCBI transcript from alignment at scaffold_117:135739..147059+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046769 ID=TCONS_00046769|Name=TCONS_00046769|organism=Clytia hemisphaerica|type=transcript|length=11321bp|location=Sequence derived from alignment at scaffold_117:135739..147059+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:135739..147059+ >TCONS_00046769 ID=TCONS_00046769|Name=TCONS_00046769|organism=Clytia hemisphaerica|type=CDS|length=18420bp|location=Sequence derived from alignment at scaffold_117:135739..147059+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046769 vs. Swiss-Prot (Human)
Match: UBE2O ((E3-independent) E2 ubiquitin-conjugating enzyme OS=Homo sapiens GN=UBE2O PE=1 SV=3) HSP 1 Score: 250.366 bits (638), Expect = 1.107e-68 Identity = 114/208 (54.81%), Postives = 151/208 (72.60%), Query Frame = 3
Query: 2223 ATKSCFQTLEQADQSHQFYSTTCLPINPRKYNAAIMKDMRLMRSHLPPGIIVKSFQDRIDLLSILITGPVGTPYEDGLFVFDLQYPDNYPIDPPNVHYHAFCTDRLNPNLYQEGKVCVSLLGTWTGKGNETWTSKSTVHQLLLSIQGLILNAEPYFNEAGYEKQRGTVEGKENSRVYNEMALIKMIESLRNMLQRPPKVFQDEIQQHF 2846
A F LE A +H F P +K+ + + K+M L+ + LP GI+VK+F+DR+DL S LI GP TPYEDGL++FD+Q P+ YP PP+ Y + C+ RLNPNLY GKVCVSLLGTW GKG E WTSKS++ Q+L+SIQGLIL EPY+NEAG++ RG EG ENSR YNEMALI++++S+ +++RPP+VF+ EI+QHF
Sbjct: 924 AKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVRKEMALLATSLPEGIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSGRLNPNLYDNGKVCVSLLGTWIGKGTERWTSKSSLLQVLISIQGLILVNEPYYNEAGFDSDRGLQEGYENSRCYNEMALIRVVQSMTQLVRRPPEVFEQEIRQHF 1131 HSP 2 Score: 149.828 bits (377), Expect = 1.342e-36 Identity = 94/231 (40.69%), Postives = 128/231 (55.41%), Query Frame = 3
Query: 1209 NIEAGNKICVEVCRTRTVANVEWQDGTFTSNVASTDLFPSENLDELEFFPGDYVIDKRVDAEAKEVTKYGVVQTADFTGRICNVRW--LYYTNDPTAVTVEEKIEEDVSVYDITYHPDFSFRPGDIVVRLSPTDKFAIYQGAKDESGNANRLSSVGQVIQVNSDGRVDVVWIDKRRSSIIPSELYS----INQDDWDGSEHXXXXXXXXXXXXXXXXLDEFPEDDDGEWET 1883
+ + G+++ VEV T T A+V WQDG+ N+ S DLFP +LD EF PGD+V+DKRV + + YGVVQ+ D GR C V+W L + D + E EEDVSVYDI HPDF FR DIV+R+ T+ A ++ +DE SVGQV +V+ +V+VVW D ++ I+P LY+ I + D+D E DE+ EDD WET
Sbjct: 537 DFKPGDRVAVEVVTTMTSADVMWQDGSVECNIRSNDLFPVHHLDNNEFCPGDFVVDKRVQS-CPDPAVYGVVQSGDHIGRTCMVKWFKLRPSGDDVELIGE---EEDVSVYDIADHPDFRFRTTDIVIRIGNTEDGAPHK--EDE-------PSVGQVARVDVSSKVEVVWADNSKTIILPQHLYNIESEIEESDYDSVEGSTSGASS----------DEW-EDDSDSWET 743 HSP 3 Score: 107.457 bits (267), Expect = 1.819e-23 Identity = 73/250 (29.20%), Postives = 130/250 (52.00%), Query Frame = 1
Query: 127 LEKGKVEIGWYSMNSKWNDKDTEVVNESTVELVDRAVMPGHVVRWSNKSNGIQKATVKNVQVYVDLQIVGTNQIVKNINAENLLPLSEYRESNAIVKGPWLGNIQEVHYTLTLVLKNKARCIISGEDIADLVDITDQRDEDSTFY--CPDFYPGQQVQGAPRAFKEAKYISGVKPILGNQRSVKAIXXXXXXXXXXXXWHVSGYSGDLDESIVQPSNILSYQDLQSADVSQLKHFKEAHLQVGDKAFYVL 870
L +G V + WY K + V E+ ++L DR+V+P VVR +S Q TV +V + ++++GTN I+ +N+++L + + + I WLG + ++ + L L N ARC ++ ED A L D+ + F+ FYPGQ + G + F +++SGVKP+L + + +VE+V+V + V W + +S+ P ++++ ++L V +L F A Q+G++ YV
Sbjct: 117 LRRGYVRVQWYPEGVKQH------VKETKLKLEDRSVVPRDVVR-HMRSTDSQCGTVIDVNIDCAVKLIGTNCIIYPVNSKDLQHIWPFMYGDYIAYDCWLGKVYDLKNQIILKLSNGARCSMNTEDGAKLYDVCPHVSDSGLFFDDSYGFYPGQVLIGPAKIFSSVQWLSGVKPVLSTKSKFRVVVEEVQVVELKVTWITKSFCPGGTDSVSPPPSVITQENL--GRVKRLGCFDHAQRQLGERCLYVF 357 The following BLAST results are available for this feature:
BLAST of TCONS_00046769 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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