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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046771 ID=TCONS_00046771|Name=TCONS_00046771|organism=Clytia hemisphaerica|type=transcript|length=2320bp
atgtttttcattttcaattatttttcttttattcttaaATGATAAATCAT
TTTTCGTTATTTCATATATGCATTTTTGTTCTCTTAAAACTAACAATAAA
CAGCGTatgtataagaaaaaataaacaagaaatgttaagaataaaattct
tgtaatttttataatcataaaaatccttcaaaaataaatctttgttaaaa
aataataacaataaaaaacttaaaatccattatttttttggacaaaaatg
tacATAAGGTGTGttgaactttttataaaaattcaacTAAATTCATAAAG
TAAATGGTCTTCTGTAAAATCTTTGATAACCTATATACAATTTCTTTTAA
TATATCAACATCATTGTATTTACAAACAAGTCAAAATTGCTTGcatttct
aaagaaaaatatcttcaacataaataaaaaattgttttatattGTAATGA
AAATGGACATGGGCATTAAAAGACTTTTCCTTAAAACATCTAACACATCC
TAATTAGTTAAACTCCAAATAGAAACCAGTCTGATGACTTAGCCGTTATA
CCTGGTTTCCGTTTACTAACTGTTCCAAAAAAGGTTTATGAATGCATGGA
GGTATGACGCACGCAACTAAAtctaattacttttttattaaaCTAAAAGG
AAAAGCATCGTTAATGTTATTGCATAATTAGCGCGTTGAGGTTTTTGTTG
TTCTATAGAGATGTCCGCTCTCTATATTTTTAAtcacaatgaaaaaataa
aattcaaatcttaaaaaataacCGTCACATTTTTGGCccctttgtatttt
ttttataatacctttgataaccttgttaaatttcctcaaaatattGTTAC
TTTTTCACGAGATAAAATgttcaagtttttcttttctgtttgtAGAAAGT
CCTGGCGGATTTGTGTAAATCCTTACATATATTCTTTGTTTACGTATTTT
GTTTAcgttttgaagttcattttgttgtttgttgcaTGTCCGTTGCTGCA
GTTACAAACTGTAAACATGAGTTACGATACCGAAAATAGGTTTGTTTATT
TCGAATACCCCCTCAATCAAGACGAAAACATAATATCGGATTATGAAACG
AATCCGATCTGCTTTATGTACAATATCGTCGATTCGAGGTATTAATCACC
GATTAAATCGGTACAATCGATGACAATTGATATTTGTCGAATATTTGCGA
GTTCTCCACTTTGCTTCCGAGACAGTTCGTACCAATTTATTTGACGTCGC
GAGTTAAACCTTTCAAGAGATTCAAACACGAAGAAACACGGCAACTTGTC
TTGCGTTTCTTGCCAGCTGACGTTGTCGAAGATGGTTGTTGAGACATGGA
GATGGTATGAATCCTCTTGATGATATCATCAAAACAATATTCGAAAGCAT
CTTTAACATGAATATTGTATTTGGACGATGTCAAGATGTGTTTAACGCCG
TGAATCTCATTCAGAATGTCAATAACCTCTTCCGATTGCTCCCAGAACTC
TGGTGGAGTTGAGCCACGTTTCAAATCCGATTTAGTACCGACGAGTACGA
TCGGAACACGGTCTTGTCGTGTCGACTTGATCACGTTAAACGTGCGTCGA
ACTTCGTTGACGGATTTTAAATTGTCAATTTCATATACCATCATGATGAC
ATCAGCAGTTTGGACATGAAGATCTCGAATCATGTTTGATTTAACTGATC
CTGGTAAATCGACGATATCAACGTTGAAATTATATCCTCGGTAAGAATAA
TCTTCATTGAAAAGTCCGTCAACTGATGGAAGGTATTGCATTGTGAACGC
ATTATTGATGAAGCGGCGAATCAAAGCTGATTTTCCGGAGCATGTGGAGC
CGACCACTAAGATTTTTCTGGTGCGTCGCTTTTCAGCGGATTCTTGGCGG
ATAagtttttgtacttttttggtGTTCATTCTTCGTTTGTTGGTTGTTTG
TTTCGTCATTTGATGTTGTTGTTATCGGCTTTGTTTCTTCGTTGAATTtc
gttttaaatttcttatttattACTCTAAGAAGAtaatgaaaaaagataaa
ttatATTAACATGTCGTAACACAAAAAGCAGTCAGCACAACAAGATATAT
GTGTGAATCAGAATAAAGTCGGGTCACAAATGAAATCTATCAAATCAAAT
TATATCCTTCTATATCccaaaacaacaagaaaataaaaacaatgtttatg
aacgaaaataaaaaatccccCATGAGACGGTTCAAAAAGATAAACAGAAA
AACTGAGGACTGAGAGGAGGATAAAACTGTTCCTATTCCTCAACCAAGTC
TGTTCTCTTCAAACCCTTAT Run BLAST on NCBI transcript from alignment at scaffold_117:193610..196597+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046771 ID=TCONS_00046771|Name=TCONS_00046771|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at scaffold_117:193610..196597+ (Clytia hemisphaerica)
atgtttttcattttcaattatttttcttttattcttaaATGATAAATCAT
TTTTCGTTATTTCATATATGCATTTTTGTTCTCTTAAAACTAACAATAAA
CAGCGTatgtataagaaaaaataaacaagaaatgttaagaataaaattct
tgtaatttttataatcataaaaatccttcaaaaataaatctttgttaaaa
aataataacaataaaaaacttaaaatccattatttttttggacaaaaatg
tacATAAGGTGTGttgaactttttataaaaattcaacTAAATTCATAAAG
TAAATGGTCTTCTGTAAAATCTTTGATAACCTATATACAATTTCTTTTAA
TATATCAACATCATTGTATTTACAAACAAGTCAAAATTGCTTGcatttct
aaagaaaaatatcttcaacataaataaaaaattgttttatattGTAATGA
AAATGGACATGGGCATTAAAAGACTTTTCCTTAAAACATCTAACACATCC
TAATTAGTTAAACTCCAAATAGAAACCAGTCTGATGACTTAGCCGTTATA
CCTGGTTTCCGTTTACTAACTGTTCCAAAAAAGGTTTATGAATGCATGGA
GGTATGACGCACGCAACTAAAtctaattacttttttattaaaCTAAAAGG
AAAAGCATCGTTAATGTTATTGCATAATTAGCGCGTTGAGGTTTTTGTTG
TTCTATAGAGATGTCCGCTCTCTATATTTTTAAtcacaatgaaaaaataa
aattcaaatcttaaaaaataacCGTCACATTTTTGGCccctttgtatttt
ttttataatacctttgataaccttgttaaatttcctcaaaatattGTTAC
TTTTTCACGAGATAAAATgttcaagtttttcttttctgtttgtAGAAAGT
CCTGGCGGATTTGTGTAAATCCTTACATATTCTTTGTTTACgtattttgt
ttacattttgaagttcattttgttgtttgttgcaTGTCCGTTGCTGCAGT
TACAAACTGTAAACATGAGTTACGATACCGAAAATAAGTTTGTTTATTTC
GAATACCCCCTCAATCAAGACGAAAACATAATATCGGATTATGAAACGAA
TCCGATCTGCTTTATGTACAATATCGTCGATTCGAGGTATTAATCACCGA
TTAAATCGGTACAATCGATGACAATTGATATTTGTCGAATATTTGCGAGT
TCTCCACTTTGCTTCCGAGACAGTTCGTACCAATTTATTTGACGTCGCGA
GTTAAACCTTTCAAGAGATTCAAACACGAAGAAACACGGCAACTTGTCTT
GCGTTTCTTGCCAGCTGACGTTGTCGAAGATGGTTGTTGAGACATGGAGA
TGGTATGAATCCTCTTGATGATATCATCAAAACAATATTCGAAAGCATCT
TTAACATGAATANaaaataaaattcaaatcttaaaaaataacCGTCACAT
TTTTGGCccctttgtattttttttataatacctttgataaccttgttaaa
tttcctcaaaatattGTTACTTTTTCTCGAGATAAAATgttcaagttttt
cttttctgtttgtAGAAAGTCCTGGCGGATTTGTGTAAATCCTTACATAT
TCTTTGTTTACGTATTTTGTTTAcgttttgaagttcattttgttgtttgt
tgcaTGTCCGTTGCTGCAGTTACAAACTGTAAACATGAGTTACGATACCG
AAAATAGGTTTGTTTATTTCGAATACCCCCTCAATCAAGACGAAAACATA
ATATCGGATTATGAAACGAATCCGATCTGCTTTATGTACAATATCGTCGA
TTCGAGGTATTAATCACCGATTAAATCGGTACAATCGATGACAATTGATA
TTTGTCGAATATTTGCGAGTTCTCCACTTTGCTTCCGAGACAGTTCGTAC
CAATTTATTTGACGTCGCGAGTTAAACCTTTCAAGAGATTCAAACACGAA
GAAACACGGCAACTTGTCTTGCGTTTCTTGCCAGCTGACGTTGTCGAAGA
TGGTTGTTGAGACATGGAGATGGTATGAATCCTCTTGATGATATCATCAA
AACAATATTCGAAAGCATCTTTAACATGAATATTGTATTTGGACGATGTC
AAGATGTGTTTAACGCCGTGAATCTCATTCAGAATGTCAATAACCTCTTC
CGATTGCTCCCAGAACTCTGGTGGAGTTGAGCCACGTTTCAAATCCGATT
TAGTACCGACGAGTACGATCGGAACACGGTCTTGTCGTGTCGACTTGATC
ACGTTAAACGTGCGTCGAACTTCGTTGACGGATTTTAAATTGTCAATTTC
ATATACCATCATGATGACATCAGCAGTTTGGACATGAAGATCTCGAATCA
TGTTTGATTTAACTGATCCTGGTAAATCGACGATATCAACGTTGAAATTA
TATCCTCGGTAAGAATAATCTTCATTGAAAAGTCCGTCAACTGATGGAAG
GTATTGCATTGTGAACGCATTATTGATGAAGCGGCGAATCAAAGCTGATT
TTCCGGAGCATGTGGAGCCGACCACTAAGATTTTTCTGGTGCGTCGCTTT
TCAGCGGATTCTTGGCGGATAagtttttgtacttttttggtGTTCATTCT
TCGTTTGTTGGTTGTTTGTTTCGTCATTTGATGTTGTTGTTATCGGCTTT
GTTTCTTCGTTGAATTtcgttttaaatttcttatttattACTCTAAGAAG
AtaatgaaaaaagataaattatATTAACATGTCGTAACACAAAAAGCAGT
CAGCACAACAAGATATATGTGTGAATCAGAATAAAGTCGGGTCACAAATG
AAATCTATCAAATCAAATTATATCCTTCTATATCccaaaacaacaagaaa
ataaaaacaatgtttatgaacgaaaataaaaaatccccCATGAGACGGTT
CAAAAAGATAAACAGAAAAACTGAGGACTGAGAGGAGGATAAAACTGTTC
CTATTCCTCAACCAAGTCTGTTCTCTTCAAACCCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046771-exon-scaffold_117-1491911889:193610..194537 | TCONS_00046771-exon-scaffold_117-1491911889:193610..194537 | Clytia hemisphaerica | exon |
| TCONS_00046771-exon-scaffold_117-1510915933:193610..194537 | TCONS_00046771-exon-scaffold_117-1510915933:193610..194537 | Clytia hemisphaerica | exon |
| TCONS_00046771-exon-scaffold_117-1575043694:193610..194537 | TCONS_00046771-exon-scaffold_117-1575043694:193610..194537 | Clytia hemisphaerica | exon |
| TCONS_00046771-exon-scaffold_117-1491911889:195206..196597 | TCONS_00046771-exon-scaffold_117-1491911889:195206..196597 | Clytia hemisphaerica | exon |
| TCONS_00046771-exon-scaffold_117-1510915933:195206..196597 | TCONS_00046771-exon-scaffold_117-1510915933:195206..196597 | Clytia hemisphaerica | exon |
| TCONS_00046771-exon-scaffold_117-1575043694:195206..196597 | TCONS_00046771-exon-scaffold_117-1575043694:195206..196597 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:193610..196597 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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