TCONS_00046772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046772
Unique NameTCONS_00046772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046772 ID=TCONS_00046772|Name=TCONS_00046772|organism=Clytia hemisphaerica|type=transcript|length=2885bp
AGCGTatgtataagaaaaaataaacaagaaatgttaagaataaaattctt
gtaatttttataatcataaaaatccttcaaaaataaatctttgttaaaaa
ataataacaataaaaaacttaaaatccattatttttttggacaaaaatgt
acATAAGGTGTGttgaactttttataaaaattcaacTAAATTCATAAAGT
AAATGGTCTTCTGTAAAATCTTTGATAACCTATATACAATTTCTTTTAAT
ATATCAACATCATTGTATTTACAAACAAGTCAAAATTGCTTGcatttcta
aagaaaaatatcttcaacataaataaaaaattgttttatattGTAATGAA
AATGGACATGGGCATTAAAAGACTTTTCCTTAAAACATCTAACACATCCT
AATTAGTTAAACTCCAAATAGAAACCAGTCTGATGACTTAGCCGTTATAC
CTGGTTTCCGTTTACTAACTGTTCCAAAAAAGGTTTATGAATGCATGGAG
GTATGACGCACGCAACTAAAtctaattacttttttattaaaCTAAAAGGA
AAAGCATCGTTAATGTTATTGCATAATTAGCGCGTTGAGGTTTTTGTTGT
TCTATAGAGATGTCCGCTCTCTATATTTTTAAtcacaatgaaaaaataaa
attcaaatcttaaaaaataacCGTCACATTTTTGGCccctttgtattttt
tttataatacctttgataaccttgttaaatttcctcaaaatattGTTACT
TTTTCACGAGATAAAATgttcaagtttttcttttctgtttgtAGAAAGTC
CTGGCGGATTTGTGTAAATCCTTACATATTCTTTGTTTACgtattttgtt
tacattttgaagttcattttgttgtttgttgcaTGTCCGTTGCTGCAGTT
ACAAACTGTAAACATGAGTTACGATACCGAAAATAAGTTTGTTTATTTCG
AATACCCCCTCAATCAAGACGAAAACATAATATCGGATTATGAAACGAAT
CCGATCTGCTTTATGTACAATATCGTCGATTCGAGGTATTAATCACCGAT
TAAATCGGTACAATCGATGACAATTGATATTTGTCGAATATTTGCGAGTT
CTCCACTTTGCTTCCGAGACAGTTCGTACCAATTTATTTGACGTCGCGAG
TTAAACCTTTCAAGAGATTCAAACACGAAGAAACACGGCAACTTGTCTTG
CGTTTCTTGCCAGCTGACGTTGTCGAAGATGGTTGTTGAGACATGGAGAT
GGTATGAATCCTCTTGATGATATCATCAAAACAATATTCGAAAGCATCTT
TAACATGAATANaaaataaaattcaaatcttaaaaaataacCGTCACATT
TTTGGCccctttgtattttttttataatacctttgataaccttgttaaat
ttcctcaaaatattGTTACTTTTTCTCGAGATAAAATgttcaagtttttc
ttttctgtttgtAGAAAGTCCTGGCGGATTTGTGTAAATCCTTACATATT
CTTTGTTTACGTATTTTGTTTAcgttttgaagttcattttgttgtttgtt
gcaTGTCCGTTGCTGCAGTTACAAACTGTAAACATGAGTTACGATACCGA
AAATAGGTTTGTTTATTTCGAATACCCCCTCAATCAAGACGAAAACATAA
TATCGGATTATGAAACGAATCCGATCTGCTTTATGTACAATATCGTCGAT
TCGAGGTATTAATCACCGATTAAATCGGTACAATCGATGACAATTGATAT
TTGTCGAATATTTGCGAGTTCTCCACTTTGCTTCCGAGACAGTTCGTACC
AATTTATTTGACGTCGCGAGTTAAACCTTTCAAGAGATTCAAACACGAAG
AAACACGGCAACTTGTCTTGCGTTTCTTGCCAGCTGACGTTGTCGAAGAT
GGTTGTTGAGACATGGAGATGGTATGAATCCTCTTGATGATATCATCAAA
ACAATATTCGAAAGCATCTTTAACATGAATATTGTATTTGGACGATGTCA
AGATGTGTTTAACGCCGTGAATCTCATTCAGAATGTCAATAACCTCTTCC
GATTGCTCCCAGAACTCTGGTGGAGTTGAGCCACGTTTCAAATCCGATTT
AGTACCGACGAGTACGATCGGAACACGGTCTTGTCGTGTCGACTTGATCA
CGTTAAACGTGCGTCGAACTTCGTTGACGGATTTTAAATTGTCAATTTCA
TATACCATCATGATGACATCAGCAGTTTGGACATGAAGATCTCGAATCAT
GTTTGATTTAACTGATCCTGGTAAATCGACGATATCAACGTTGAAATTAT
ATCCTCGGTAAGAATAATCTTCATTGAAAAGTCCGTCAACTGATGGAAGG
TATTGCATTGTGAACGCATTATTGATGAAGCGGCGAATCAAAGCTGATTT
TCCGGAGCATGTGGAGCCGACCACTAAGATTTTTCTGGTGCGTCGCTTTT
CAGCGGATTCTTGGCGGATAagtttttgtacttttttggtGTTCATTCTT
CGTTTGTTGGTTGTTTGTTTCGTCATTTGATGTTGTTGTTATCGGCTTTG
TTTCTTCGTTGAATTtcgttttaaatttcttatttattACTCTAAGAAGA
taatgaaaaaagataaattatATTAACATGTCGTAACACAAAAAGCAGTC
AGCACAACAAGATATATGTGTGAATCAGAATAAAGTCGGGTCACAAATGA
AATCTATCAAATCAAATTATATCCTTCTATATCccaaaacaacaagaaaa
taaaaacaatgtttatgaacgaaaataaaaaatccccCATGAGACGGTTC
AAAAAGATAAACAGAAAAACTGAGGACTGAGAGGAGGATAAAACTGTTCC
TATTCCTCAACCAAGTCTGTTCTCTTCAAACCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_117:193711..196595+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046772 ID=TCONS_00046772|Name=TCONS_00046772|organism=Clytia hemisphaerica|type=transcript|length=2885bp|location=Sequence derived from alignment at scaffold_117:193711..196595+ (Clytia hemisphaerica)
AGCGTatgtataagaaaaaataaacaagaaatgttaagaataaaattctt
gtaatttttataatcataaaaatccttcaaaaataaatctttgttaaaaa
ataataacaataaaaaacttaaaatccattatttttttggacaaaaatgt
acATAAGGTGTGttgaactttttataaaaattcaacTAAATTCATAAAGT
AAATGGTCTTCTGTAAAATCTTTGATAACCTATATACAATTTCTTTTAAT
ATATCAACATCATTGTATTTACAAACAAGTCAAAATTGCTTGcatttcta
aagaaaaatatcttcaacataaataaaaaattgttttatattGTAATGAA
AATGGACATGGGCATTAAAAGACTTTTCCTTAAAACATCTAACACATCCT
AATTAGTTAAACTCCAAATAGAAACCAGTCTGATGACTTAGCCGTTATAC
CTGGTTTCCGTTTACTAACTGTTCCAAAAAAGGTTTATGAATGCATGGAG
GTATGACGCACGCAACTAAAtctaattacttttttattaaaCTAAAAGGA
AAAGCATCGTTAATGTTATTGCATAATTAGCGCGTTGAGGTTTTTGTTGT
TCTATAGAGATGTCCGCTCTCTATATTTTTAAtcacaatgaaaaaataaa
attcaaatcttaaaaaataacCGTCACATTTTTGGCccctttgtattttt
tttataatacctttgataaccttgttaaatttcctcaaaatattGTTACT
TTTTCACGAGATAAAATgttcaagtttttcttttctgtttgtAGAAAGTC
CTGGCGGATTTGTGTAAATCCTTACATATTCTTTGTTTACgtattttgtt
tacattttgaagttcattttgttgtttgttgcaTGTCCGTTGCTGCAGTT
ACAAACTGTAAACATGAGTTACGATACCGAAAATAAGTTTGTTTATTTCG
AATACCCCCTCAATCAAGACGAAAACATAATATCGGATTATGAAACGAAT
CCGATCTGCTTTATGTACAATATCGTCGATTCGAGGTATTAATCACCGAT
TAAATCGGTACAATCGATGACAATTGATATTTGTCGAATATTTGCGAGTT
CTCCACTTTGCTTCCGAGACAGTTCGTACCAATTTATTTGACGTCGCGAG
TTAAACCTTTCAAGAGATTCAAACACGAAGAAACACGGCAACTTGTCTTG
CGTTTCTTGCCAGCTGACGTTGTCGAAGATGGTTGTTGAGACATGGAGAT
GGTATGAATCCTCTTGATGATATCATCAAAACAATATTCGAAAGCATCTT
TAACATGAATANaaaataaaattcaaatcttaaaaaataacCGTCACATT
TTTGGCccctttgtattttttttataatacctttgataaccttgttaaat
ttcctcaaaatattGTTACTTTTTCTCGAGATAAAATgttcaagtttttc
ttttctgtttgtAGAAAGTCCTGGCGGATTTGTGTAAATCCTTACATATT
CTTTGTTTACGTATTTTGTTTAcgttttgaagttcattttgttgtttgtt
gcaTGTCCGTTGCTGCAGTTACAAACTGTAAACATGAGTTACGATACCGA
AAATAGGTTTGTTTATTTCGAATACCCCCTCAATCAAGACGAAAACATAA
TATCGGATTATGAAACGAATCCGATCTGCTTTATGTACAATATCGTCGAT
TCGAGGTATTAATCACCGATTAAATCGGTACAATCGATGACAATTGATAT
TTGTCGAATATTTGCGAGTTCTCCACTTTGCTTCCGAGACAGTTCGTACC
AATTTATTTGACGTCGCGAGTTAAACCTTTCAAGAGATTCAAACACGAAG
AAACACGGCAACTTGTCTTGCGTTTCTTGCCAGCTGACGTTGTCGAAGAT
GGTTGTTGAGACATGGAGATGGTATGAATCCTCTTGATGATATCATCAAA
ACAATATTCGAAAGCATCTTTAACATGAATATTGTATTTGGACGATGTCA
AGATGTGTTTAACGCCGTGAATCTCATTCAGAATGTCAATAACCTCTTCC
GATTGCTCCCAGAACTCTGGTGGAGTTGAGCCACGTTTCAAATCCGATTT
AGTACCGACGAGTACGATCGGAACACGGTCTTGTCGTGTCGACTTGATCA
CGTTAAACGTGCGTCGAACTTCGTTGACGGATTTTAAATTGTCAATTTCA
TATACCATCATGATGACATCAGCAGTTTGGACATGAAGATCTCGAATCAT
GTTTGATTTAACTGATCCTGGTAAATCGACGATATCAACGTTGAAATTAT
ATCCTCGGTAAGAATAATCTTCATTGAAAAGTCCGTCAACTGATGGAAGG
TATTGCATTGTGAACGCATTATTGATGAAGCGGCGAATCAAAGCTGATTT
TCCGGAGCATGTGGAGCCGACCACTAAGATTTTTCTGGTGCGTCGCTTTT
CAGCGGATTCTTGGCGGATAagtttttgtacttttttggtGTTCATTCTT
CGTTTGTTGGTTGTTTGTTTCGTCATTTGATGTTGTTGTTATCGGCTTTG
TTTCTTCGTTGAATTtcgttttaaatttcttatttattACTCTAAGAAGA
taatgaaaaaagataaattatATTAACATGTCGTAACACAAAAAGCAGTC
AGCACAACAAGATATATGTGTGAATCAGAATAAAGTCGGGTCACAAATGA
AATCTATCAAATCAAATTATATCCTTCTATATCccaaaacaacaagaaaa
taaaaacaatgtttatgaacgaaaataaaaaatccccCATGAGACGGTTC
AAAAAGATAAACAGAAAAACTGAGGACTGAGAGGAGGATAAAACTGTTCC
TATTCCTCAACCAAGTCTGTTCTCTTCAAACCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029848XLOC_029848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046772-exon-scaffold_117-1491911889:193711..196595TCONS_00046772-exon-scaffold_117-1491911889:193711..196595Clytia hemisphaericaexon
TCONS_00046772-exon-scaffold_117-1510915933:193711..196595TCONS_00046772-exon-scaffold_117-1510915933:193711..196595Clytia hemisphaericaexon
TCONS_00046772-exon-scaffold_117-1575043694:193711..196595TCONS_00046772-exon-scaffold_117-1575043694:193711..196595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:193711..196595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0450333	0	0.0707885	0.132787	2.50324	2.58772	2.31638	11.0351	3.71865	2.81839	23.538	20.2701	21.7298	15.3942	12.7717	16.8207	12.9784	8.17188	1.02189	1.84216	1.66411	1.25075	8.74527	4.1466	18.177	12.2755	25.4591	22.6719
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top