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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046804 ID=TCONS_00046804|Name=TCONS_00046804|organism=Clytia hemisphaerica|type=transcript|length=1596bp
AATGTTTATGGTATACTCACGTATTGCTTAAATATAATAGAAGGTTTAAA
TTTGTTGGATCGGGATGtcttttcttaagaaattgaaaCGAAAAGataac
aATGTTTTCACGGAGAAGCCGAAAAAGAAATCgtccaaaaagtcaaaatc
caAAAGTTTGAAATCTACTTCACCGGAAGAAAATGTATACGCTTCGATAC
CGGAAGCGAATGATACTAACGGTAGCGAAAAACAACGGGCAAGCACAATC
GCAGAAGAAAGTTTATCTTCTTCCACAAAGGAAAAAGTGGAACTTAAAAA
ACGGTCTAGCTCTGTTGCGGACACCCTGACACGGGCCAATTCCGCATTAC
GGAAAATGTCTACAGCAACGGAAGATGATACCGCGGTAGAGAGTATTTAT
CAAGAACTCGATCAAGAGCTTGACAATGAAGTAGATAGTGACGAAAGTGA
CATTGAGGGCGTTGATGGGGCGCCAACGCCATGCACCACACCTGATCTCC
CGCTACCAGTTGGCGGAAATCAAAAATACGCATTTACGGAAATGAAAGAG
TTATTTACTGACGAACAGATTAATGAAATGATGGACATTGATTTGAAGaa
gctttcaaaacaaaataaattgagttttgatgagAAAGAAGAATTCCCAG
CTTTCGCGCTGCTGAAAAGTTACGCTGCTAGTTTGAATAAATAATGCGAG
AGGGAGGCTCTTcgttgtttttagttttcatctAGTAAATATCATAGCTC
GCATCACCCTTCGCCCTGTATAAAAGGGGGCGGGGATAGAAATGTGCTGA
AAATCAGAGTTTTCCAGAAAAAGTGAAGTTTAAATAAATTAGTGAGGTTC
attcaacaggggggggggcggTTTTCTGCTTGAAGAAATCCCACAAATGT
TGACTTCCAAATGGAAAGGTTCCAGGATCAACAGGAATACCTCGATGCTG
CCACGGTGGTAACGCGCCCACAAAGAATTGAACCTaatctttctaatttt
ctaatTGTGAAGTTTTGACatcattttgaaattctaaaaattttcttgct
tAAGAAAGCGAGGCGTTGATCTTGAGGAAGTGACCTACATTTTAATTAAG
AGTTGCATCCTAAACAATTATGTCATGTTATGGCGAATTTCAGGGATAAA
TTTCAAATTGCCTAAACTTTGAGAAGGGCCCGTGGCGTTTTAGAACGCCA
TGGAAGGGTCATATATTTTTGTACTTAgatttataatattttgtaaCACc
agataatttatttttttgcactCATACTATACTtagcattttttttattt
cagcaaAACTTGTTATAGAGAAACGTTGACTTGTTCCCGGTTCTATAATT
CGATGTTTAAATCTTTCTTGTCGGCTTGGGCGACCATCAGCGCTTTCGGA
GGGTGTATTTCGACCAAATTCAGGGACCCTCTTATGAAGAAAAGCTTAAT
AGGTTTCCGGGCTAATCTGTATCAATATAATTTTTGGCGCAGACAAAata
ggctgtaacttttgatagacttCTAATTAGATAGCGATTTTGTgcttatt
gaaaagatattcgaGAGTGAACATTATAAAAGATATCCAATAAAAT Run BLAST on NCBI transcript from alignment at scaffold_117:388527..390539- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046804 ID=TCONS_00046804|Name=TCONS_00046804|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at scaffold_117:388527..390539- (Clytia hemisphaerica)
AATGTTTATGGTATACTCACGTATTGCTTAAATATAATAGAAGGTTTAAA
TTTGTTGGATCGGGATGTCTTTTCTTAAGAAATTGAAACGAAAAGGTATT
AAATTTATATTTAAACATATGTCACTGCTGAGCCCTTTTCAGAAGATTTG
ACCTCTTGGAAAGTTAGTCTTAAAGAAGCTCCTGTGGCCCCAGTTTCGCT
TCAAATACCTTCAAATTGTACACCAATCGACGCAAAAGTTTCTGTGTCAA
AAGTTATAACTCTTTGAAGTACTGCCGGTATTACGAGTATACTCATAGTC
GGCAGTGAATGTGTTAAGAAAGCTCTTTTCATAATTTATATCAGTGAGAC
ATGGATAGTGAGACATCTGATGAAAACTAAATACTTTAATGCTTTGATTC
ATTCGGGTATTAAAATCAACACAACATTCTTTTTGCCCGGAGCGAAGATT
TTTCAGACTTCCCAAACTAGAATCATTTGACCAAGTGCATACGTTTTTGA
TTTTTTTTTCAGATAACAATGTTTTCACGGAGAAGCCGAAAAAGAAATCG
TCCAAAAAGTCAAAATCCAAAAGTTTGAAATCTACTTCACCGGAAGAAAA
TGTATACGCTTCGATACCGGAAGCGAATGATACTAACGGTAGCGAAAAAC
AACGGGCAAGCACAATCGCAGAAGAAAGTTTATCTTCTTCCACAAAGGAA
AAAGTGGAACTTAAAAAACGGTCTAGCTCTGTTGCGGACACCCTGACACG
GGCCAATTCCGCATTACGGAAAATGTCTACAGCAACGGAAGATGATACCG
CGGTAGAGAGTATTTATCAAGAACTCGATCAAGAGCTTGACAATGAAGTA
GATAGTGACGAAAGTGACATTGAGGGCGTTGATGGGGCGCCAACGCCATG
CACCACACCTGATCTCCCGCTACCAGTTGGCGGAAATCAAAAATACGCAT
TTACGGAAATGAAAGAGTTATTTACTGACGAACAGATTAATGAAATGATG
GACATTGATTTGAAGAAGCTTTCAAAACAAAATAAATTGAGTTTTGATGA
GAAAGAAGAATTCCCAGCTTTCGCGCTGCTGAAAAGTTACGCTGCTAGTT
TGAATAAATAATGCGAGAGGGAGGCTCTTCGTTGTTTTTAGTTTTCATCT
AGTAAATATCATAGCTCGCATCACCCTTCGCCCTGTATAAAAGGGGGCGG
GGATAGAAATGTGCTGAAAATCAGAGTTTTCCAGAAAAAGTGAAGTTTAA
ATAAATTAGTGAGGTTCATTCAACAGGGGGGGGGGCGGTTTTCTGCTTGA
AGAAATCCCACAAATGTTGACTTCCAAATGGAAAGGTTCCAGGATCAACA
GGAATACCTCGATGCTGCCACGGTGGTAACGCGCCCACAAAGAATTGAAC
CTAATCTTTCTAATTTTCTAATTGTGAAGTTTTGACATCATTTTGAAATT
CTAAAAATTTTCTTGCTTAAGAAAGCGAGGCGTTGATCTTGAGGAAGTGA
CCTACATTTTAATTAAGAGTTGCATCCTAAACAATTATGTCATGTTATGG
CGAATTTCAGGGATAAATTTCAAATTGCCTAAACTTTGAGAAGGGCCCGT
GGCGTTTTAGAACGCCATGGAAGGGTCATATATTTTTGTACTTAGATTTA
TAATATTTTGTAACACCAGATAATTTATTTTTTTGCACTCATACTATACT
TAGCATTTTTTTTATTTCAGCAAAACTTGTTATAGAGAAACGTTGACTTG
TTCCCGGTTCTATAATTCGATGTTTAAATCTTTCTTGTCGGCTTGGGCGA
CCATCAGCGCTTTCGGAGGGTGTATTTCGACCAAATTCAGGGACCCTCTT
ATGAAGAAAAGCTTAATAGGTTTCCGGGCTAATCTGTATCAATATAATTT
TTGGCGCAGACAAAATAGGCTGTAACTTTTGATAGACTTCTAATTAGATA
GCGATTTTGTGCTTATTGAAAAGATATTCGAGAGTGAACATTATAAAAGA
TATCCAATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046804-exon-scaffold_117-1575043694:390445..390539 | TCONS_00046804-exon-scaffold_117-1575043694:390445..390539 | Clytia hemisphaerica | exon |
| TCONS_00046804-exon-scaffold_117-1575043694:388527..390027 | TCONS_00046804-exon-scaffold_117-1575043694:388527..390027 | Clytia hemisphaerica | exon |
| TCONS_00046804-exon-scaffold_117-1510915933:390445..390539 | TCONS_00046804-exon-scaffold_117-1510915933:390445..390539 | Clytia hemisphaerica | exon |
| TCONS_00046804-exon-scaffold_117-1510915933:388527..390027 | TCONS_00046804-exon-scaffold_117-1510915933:388527..390027 | Clytia hemisphaerica | exon |
| TCONS_00046804-exon-scaffold_117-1491911889:390445..390539 | TCONS_00046804-exon-scaffold_117-1491911889:390445..390539 | Clytia hemisphaerica | exon |
| TCONS_00046804-exon-scaffold_117-1491911889:388527..390027 | TCONS_00046804-exon-scaffold_117-1491911889:388527..390027 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:388527..390539 - |
Blast
The following BLAST results are available for this feature:
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