TCONS_00046851 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046851
Unique NameTCONS_00046851
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046851 ID=TCONS_00046851|Name=TCONS_00046851|organism=Clytia hemisphaerica|type=transcript|length=277bp
NNGTTTTCTTGATCGAGTATGCGATTTACAtactttcttttcttctcttt
ctccaTTTGCTTCATTACACTAGCAAGATTTTGGTTTTGGTAACTTCTGG
CTGAAGGGGGAAAAACCCTCACGTCAAGAAATGCCTTCTGTTGCCTCTGC
CAAAATCCTCTTAGTGTAACATCAGCGCAGAGTTCCGAGTCATGATCGAA
AcgtttttgaagaattggttcCTTCTCAACATCTTTGCAAACAATTGCAG
ATAGATTAGCCGTTATGTTAACCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_117:310502..310778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046851 ID=TCONS_00046851|Name=TCONS_00046851|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at scaffold_117:310502..310778 (Clytia hemisphaerica)
AATTGGTTAACATAACGGCTAATCTATCTGCAATTGTTTGCAAAGATGTT
GAGAAGgaaccaattcttcaaaaacgTTTCGATCATGACTCGGAACTCTG
CGCTGATGTTACACTAAGAGGATTTTGGCAGAGGCAACAGAAGGCATTTC
TTGACGTGAGGGTTTTTCCCCCTTCAGCCAGAAGTTACCAAAACCAAAAT
CTTGCTAGTGTAATGAAGCAAAtggagaaagagaagaaaagaaagtaTGT
AAATCGCATACTCGATCAAGAAAACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029895XLOC_029895Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046851-exon-scaffold_117-1491911889:310502..310778TCONS_00046851-exon-scaffold_117-1491911889:310502..310778Clytia hemisphaericaexon
TCONS_00046851-exon-scaffold_117-1510915933:310502..310778TCONS_00046851-exon-scaffold_117-1510915933:310502..310778Clytia hemisphaericaexon
TCONS_00046851-exon-scaffold_117-1575043694:310502..310778TCONS_00046851-exon-scaffold_117-1575043694:310502..310778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:310502..310778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782546	0.274107	1.919	0.569861	0.693751	1.40356	0.661394	0	0	0	1.26496	0.848509	0.342138	0.710627	0.876348	0.626971	0	0.576832	0	0	0	0.397685	0	0	0.552332	1.34489	0.7054	0	0	0.581747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046851 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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