TCONS_00046853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046853
Unique NameTCONS_00046853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046853 ID=TCONS_00046853|Name=TCONS_00046853|organism=Clytia hemisphaerica|type=transcript|length=406bp
GAGAAAACGGAGCTTAACCAAGAAACTATCCAAGAGCTTGGTAAAAGTTT
GGAAATCGAACAGAAACTACTCCTTGATACGCAGCGCTCCTTACAGCAAC
AAACTGAACAAATCAATGCCCAGGCTTCTCAGCTCACAGAATTGAATAGA
AAGAAAGCTGTCAtcaagaagaaattttttaagGCTACCAAAGAGATCAA
GGAAGCTAACGATAAGGTCGTCCAGAGTCAAGAAGAGTTTAACAAACAAC
AACAGGAGCTGGATGATCTAAAGGCTATAAATGACAAATTGAGAAAGGAT
AACGAGGAAGAGCGTAAGAAACATATTGAAGAACTGACACGAAAAGAGAG
CGAGTTGGTTAAGATGTACGACAGCTTCAAAGACCAAGTCGATATCAAGG
Aacaaa
Run BLAST on NCBI

protein sequence of TCONS_00046853-protein

>TCONS_00046853-protein ID=TCONS_00046853-protein|Name=TCONS_00046853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
EKTELNQETIQELGKSLEIEQKLLLDTQRSLQQQTEQINAQASQLTELNR
KKAVIKKKFFKATKEIKEANDKVVQSQEEFNKQQQELDDLKAINDKLRKD
NEEERKKHIEELTRKESELVKMYDSFKDQVDIKEQ
Run BLAST on NCBI

transcript from alignment at scaffold_117:325095..325500

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046853 ID=TCONS_00046853|Name=TCONS_00046853|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_117:325095..325500 (Clytia hemisphaerica)
tttgtTCCTTGATATCGACTTGGTCTTTGAAGCTGTCGTACATCTTAACC
AACTCGCTCTCTTTTCGTGTCAGTTCTTCAATATGTTTCTTACGCTCTTC
CTCGTTATCCTTTCTCAATTTGTCATTTATAGCCTTTAGATCATCCAGCT
CCTGTTGTTGTTTGTTAAACTCTTCTTGACTCTGGACGACCTTATCGTTA
GCTTCCTTGATCTCTTTGGTAGCcttaaaaaatttcttcttgaTGACAGC
TTTCTTTCTATTCAATTCTGTGAGCTGAGAAGCCTGGGCATTGATTTGTT
CAGTTTGTTGCTGTAAGGAGCGCTGCGTATCAAGGAGTAGTTTCTGTTCG
ATTTCCAAACTTTTACCAAGCTCTTGGATAGTTTCTTGGTTAAGCTCCGT
TTTCTC

Coding sequence (CDS) from alignment at scaffold_117:325095..325500

>TCONS_00046853 ID=TCONS_00046853|Name=TCONS_00046853|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_117:325095..325500 (Clytia hemisphaerica)
ttgtTCCTTGATATCGACTTGGTCTTTGAAGCTGTCGTACATCTTAACCA
ACTCGCTCTCTTTTCGTGTCAGTTCTTCAATATGTTTCTTACGCTCTTCC
TCGTTATCCTTTCTCAATTTGTCATTTATAGCCTTTAGATCATCCAGCTC
CTGTTGTTGTTTGTTAAACTCTTCTTGACTCTGGACGACCTTATCGTTAG
CTTCCTTGATCTCTTTGGTAGCcttaaaaaatttcttcttgaTGACAGCT
TTCTTTCTATTCAATTCTGTGAGCTGAGAAGCCTGGGCATTGATTTGTTC
AGTTTGTTGCTGTAAGGAGCGCTGCGTATCAAGGAGTAGTTTCTGTTCGA
TTTCCAAACTTTTACCAAGCTCTTGGATAGTTTCTTGGTTAAGCTCCGTT
TTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029897XLOC_029897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046853-exon-scaffold_117-1491911889:325095..325500TCONS_00046853-exon-scaffold_117-1491911889:325095..325500Clytia hemisphaericaexon
TCONS_00046853-exon-scaffold_117-1510915933:325095..325500TCONS_00046853-exon-scaffold_117-1510915933:325095..325500Clytia hemisphaericaexon
TCONS_00046853-exon-scaffold_117-1575043694:325095..325500TCONS_00046853-exon-scaffold_117-1575043694:325095..325500Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046853-proteinTCONS_00046853-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:325095..325500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.175616	0	0	0.177457	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.517693	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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