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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046859 ID=TCONS_00046859|Name=TCONS_00046859|organism=Clytia hemisphaerica|type=transcript|length=1262bp
GGCCCATCATCTCATCACTCGAACCTTCCAACTCCACCAACAGATCCTGT
CTGCACCATCTGCAATGCACCTGAAGGATTTAACGAGCACGTATCAACAT
CTGGTCCGAAATCAACCAGAATCATGCAATACTACACCTGCAAAGAGTTT
GCTACACAGTCTCCAGCCGAACGTCTGAAGATCCTGAACAACAAAGGCTT
CTGTATCCAATGTCTCTTCCCAGGAGCCAGCTCAACGACAGGTAAACATC
AAGATGGAAGATGCCAACATGATTTCATCTGTCCGCATCCCACACATCAT
CAAAATCCAATCAAGAAGCACNTTCCCAGGAGCCAGCTCAACGACAGGTA
AACATCAAGATGGAAGATGCCAACATGATTTCATCTGTCCACATCCCACA
CATCATCAAGATCCAATCAAGAAGCACGTCCTACTCTGCGAAGATCACAA
AGCCTTACCATCAAATCAACAACTGCTCAAGAGGTATGTAGATCGTTTCA
TCAAAAGCCCAAAACTACCAGCTTTTGCTCGTCAAATTCACCTCTACAAA
GCTTCCAACAATGATTGCAATGAGAGAGGCATCTACCTTCTACAGAAAAT
TCGCGTCAATGGCAAAGACCTCGTCATATTCTTTGACAATGGATGTAGTG
ATTTTGTCGTTAGTCACGAAGCCATCAAACTACTTGGACCATTTGCAGAA
CAATTATCATCTGAACCAATCAGCATTGGTGGTGTCGGTCAAACACAAGC
ACAATCAACACTTGGCACCTATCGCGTCAAGATTCCACTCCACGATGGTA
CTGAAGTCTCACTCATTGGGGCTTGCCTTGAGAAAATCACTGAAACATTT
CCGATGTATCCATTGGACCAAGTTGAACGAGATATCAATCATCAGTACAG
CTTATCAAATCAATCTGGCAACCTTCCAAAGCTTGCACCATCCATCGGTG
GAGATGTTCATCTAATGATCGGTGTCAAACATCTTTCACTTCATCccatt
atgaaatttcaacTTGAATCTGGACTTGCCATCTACGAatccaaattttt
caattcttctggTGGACGAGGACTCGTTGGTGGACCTCACCCAACCTTCA
CAGCCATTCATCAAAACTTCCTGTCATCATCAATGACAACCTTCTTCACA
GATCAGTTCATCAGAATCCGCAGTCGACCAGATTCACCTCTTCTTGGATT
CAAACCAACACATCCAGCTCAACCAATCAACACTGAAGTTCACCTGTCAA
CAGCAATGCGAG Run BLAST on NCBI protein sequence of TCONS_00046859-protein >TCONS_00046859-protein ID=TCONS_00046859-protein|Name=TCONS_00046859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MEDANMISSVRIPHIIKIQSRSXFPGASSTTGKHQDGRCQHDFICPHPTH
HQDPIKKHVLLCEDHKALPSNQQLLKRYVDRFIKSPKLPAFARQIHLYKA
SNNDCNERGIYLLQKIRVNGKDLVIFFDNGCSDFVVSHEAIKLLGPFAEQ
LSSEPISIGGVGQTQAQSTLGTYRVKIPLHDGTEVSLIGACLEKITETFP
MYPLDQVERDINHQYSLSNQSGNLPKLAPSIGGDVHLMIGVKHLSLHPIM
KFQLESGLAIYESKFFNSSGGRGLVGGPHPTFTAIHQNFLSSSMTTFFTD
QFIRIRSRPDSPLLGFKPTHPAQPINTEVHLSTAMR Run BLAST on NCBI transcript from alignment at scaffold_117:375619..376880 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046859 ID=TCONS_00046859|Name=TCONS_00046859|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at scaffold_117:375619..376880 (Clytia hemisphaerica)
CTCGCATTGCTGTTGACAGGTGAACTTCAGTGTTGATTGGTTGAGCTGGA
TGTGTTGGTTTGAATCCAAGAAGAGGTGAATCTGGTCGACTGCGGATTCT
GATGAACTGATCTGTGAAGAAGGTTGTCATTGATGATGACAGGAAGTTTT
GATGAATGGCTGTGAAGGTTGGGTGAGGTCCACCAACGAGTCCTCGTCCA
ccagaagaattgaaaaatttggatTCGTAGATGGCAAGTCCAGATTCAAg
ttgaaatttcataatggGATGAAGTGAAAGATGTTTGACACCGATCATTA
GATGAACATCTCCACCGATGGATGGTGCAAGCTTTGGAAGGTTGCCAGAT
TGATTTGATAAGCTGTACTGATGATTGATATCTCGTTCAACTTGGTCCAA
TGGATACATCGGAAATGTTTCAGTGATTTTCTCAAGGCAAGCCCCAATGA
GTGAGACTTCAGTACCATCGTGGAGTGGAATCTTGACGCGATAGGTGCCA
AGTGTTGATTGTGCTTGTGTTTGACCGACACCACCAATGCTGATTGGTTC
AGATGATAATTGTTCTGCAAATGGTCCAAGTAGTTTGATGGCTTCGTGAC
TAACGACAAAATCACTACATCCATTGTCAAAGAATATGACGAGGTCTTTG
CCATTGACGCGAATTTTCTGTAGAAGGTAGATGCCTCTCTCATTGCAATC
ATTGTTGGAAGCTTTGTAGAGGTGAATTTGACGAGCAAAAGCTGGTAGTT
TTGGGCTTTTGATGAAACGATCTACATACCTCTTGAGCAGTTGTTGATTT
GATGGTAAGGCTTTGTGATCTTCGCAGAGTAGGACGTGCTTCTTGATTGG
ATCTTGATGATGTGTGGGATGTGGACAGATGAAATCATGTTGGCATCTTC
CATCTTGATGTTTACCTGTCGTTGAGCTGGCTCCTGGGAANGTGCTTCTT
GATTGGATTTTGATGATGTGTGGGATGCGGACAGATGAAATCATGTTGGC
ATCTTCCATCTTGATGTTTACCTGTCGTTGAGCTGGCTCCTGGGAAGAGA
CATTGGATACAGAAGCCTTTGTTGTTCAGGATCTTCAGACGTTCGGCTGG
AGACTGTGTAGCAAACTCTTTGCAGGTGTAGTATTGCATGATTCTGGTTG
ATTTCGGACCAGATGTTGATACGTGCTCGTTAAATCCTTCAGGTGCATTG
CAGATGGTGCAGACAGGATCTGTTGGTGGAGTTGGAAGGTTCGAGTGATG
AGATGATGGGCC Coding sequence (CDS) from alignment at scaffold_117:375619..376880 >TCONS_00046859 ID=TCONS_00046859|Name=TCONS_00046859|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_117:375619..376880 (Clytia hemisphaerica)
TCGCATTGCTGTTGACAGGTGAACTTCAGTGTTGATTGGTTGAGCTGGAT
GTGTTGGTTTGAATCCAAGAAGAGGTGAATCTGGTCGACTGCGGATTCTG
ATGAACTGATCTGTGAAGAAGGTTGTCATTGATGATGACAGGAAGTTTTG
ATGAATGGCTGTGAAGGTTGGGTGAGGTCCACCAACGAGTCCTCGTCCAc
cagaagaattgaaaaatttggatTCGTAGATGGCAAGTCCAGATTCAAgt
tgaaatttcataatggGATGAAGTGAAAGATGTTTGACACCGATCATTAG
ATGAACATCTCCACCGATGGATGGTGCAAGCTTTGGAAGGTTGCCAGATT
GATTTGATAAGCTGTACTGATGATTGATATCTCGTTCAACTTGGTCCAAT
GGATACATCGGAAATGTTTCAGTGATTTTCTCAAGGCAAGCCCCAATGAG
TGAGACTTCAGTACCATCGTGGAGTGGAATCTTGACGCGATAGGTGCCAA
GTGTTGATTGTGCTTGTGTTTGACCGACACCACCAATGCTGATTGGTTCA
GATGATAATTGTTCTGCAAATGGTCCAAGTAGTTTGATGGCTTCGTGACT
AACGACAAAATCACTACATCCATTGTCAAAGAATATGACGAGGTCTTTGC
CATTGACGCGAATTTTCTGTAGAAGGTAGATGCCTCTCTCATTGCAATCA
TTGTTGGAAGCTTTGTAGAGGTGAATTTGACGAGCAAAAGCTGGTAGTTT
TGGGCTTTTGATGAAACGATCTACATACCTCTTGAGCAGTTGTTGATTTG
ATGGTAAGGCTTTGTGATCTTCGCAGAGTAGGACGTGCTTCTTGATTGGA
TCTTGATGATGTGTGGGATGTGGACAGATGAAATCATGTTGGCATCTTCC
ATCTTGATGTTTACCTGTCGTTGAGCTGGCTCCTGGGAANGTGCTTCTTG
ATTGGATTTTGATGATGTGTGGGATGCGGACAGATGAAATCATGTTGGCA
TCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046859-exon-scaffold_117-1491911889:375619..376880 | TCONS_00046859-exon-scaffold_117-1491911889:375619..376880 | Clytia hemisphaerica | exon |
| TCONS_00046859-exon-scaffold_117-1510915933:375619..376880 | TCONS_00046859-exon-scaffold_117-1510915933:375619..376880 | Clytia hemisphaerica | exon |
| TCONS_00046859-exon-scaffold_117-1575043694:375619..376880 | TCONS_00046859-exon-scaffold_117-1575043694:375619..376880 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:375619..376880 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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