|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046861 ID=TCONS_00046861|Name=TCONS_00046861|organism=Clytia hemisphaerica|type=transcript|length=1869bp
tttttttacttgacctctaccaaacctttttaaacagataaaaaatgaca
acttgaaaaatattccaggCTAATATATTCTTATGTTATGcgtaggaatt
ctgcaaatctgaaccttcatatgcttataagcgttatgctcataaaaaaa
tatgtagtgCCAAGCTGTACAGATTTTATATGTTGTAtatcggacggagg
atcgagataaaaataccattagatgctggaaatttccaacatgtttcggc
cagGGCCGTTTTCTATATGTTGTGTACACACATGGCATACATAATTATGT
GGAATAAAAGTAAGAGACGTTATGTTTCCATTGCAGCAACTTCTTCGAAG
CAAAATATCTTTACTCAAATATCAAATGTTTACAAGTACTTACATGTTGA
TATAATGGTATAATATAGTGCCCAGAAAAAAGTGGACCAGAAAAACTAAA
TgcctttttcataaaaagaacAACATTGGTATAAGAAATCTAACAGAATA
ATTTTTAGTTACAATAACATTTCTGGAACAGTTTAGTTAAGAACAACGAT
CCGTGAAAGGTTTTCTTAAAGATAATTAATGAGTATTAAAGATGATTAAA
ACTTTTTCTGTGAATTCACTTGTTATGCTTCTAAAGAAGAACAAATTCGG
CTCATTCTCAAGTAAAAGCCATGTCTAGCAACCTAAATTTCATGTCAAAA
CATAAACAGTGTCAAAGATTACAATTTCAAATGTATGAAAACCATCTCGT
AAAAAATGGACTTCTTGGTATTTgactttcataaaaaaataagaaaaatt
tatgATCCAATTTTGCACAAGTCCAAACAAACCcgatttttaacagtttt
caggctttaaaagGGGTTGATTTATAAGACctgtaggtccaaaaactatt
AAGATTAATCCCCATATGAGCAATCGCCAAACGCAAAATGCTAGTTTGTA
GGGTCGAAAATACGTACCCCAAGCCCAAAAAATCATAacgtttgaaaaat
taaaaaagaaaacatgtgtGCAAAATGGAGCATTATCCAAAACCAAAACG
TATCATGCTTCGATAAACAAAATAGGCTTGGTCTGCCAATGATTGGTAAA
TGGGTCAAGTTATTACTCTTCAATGTTTattgtgggggggggggggtatt
ttTCCATTTGTTTGATCTTTTCACTTCTAAGTAAATTCATAATGGCCCCT
CCCTCTATTTTATTACTGTTACCCCAAAAGTGTCAAAAACCTTCATTTGC
CTAGGGAAAATCACTAAAATCACTCAATTAAGCACAGAATTAGGGTCATT
GACTTCAAAGTGCACCAAAGAATCTTTAGTCTATCATACCTATGTATAAA
AAAAGTTCCTGTTCGATTATGATTATTATTCCATTGAtatagaaataaag
aaaaatcgtaCTATTTCCTTTGTATTTCTCAATCGATTTTCTCTTAGATG
TAAACCAACCAGAGATCTACTCCGCACCAGTTTAGACCTCCCGTGAGACG
TTCGCAAGTTATACAGCAATGTATTTTGAGTTTGTGAGATCTATTTGCCT
TGGTAATTGTCTTAATGTTCACAAAATAATTCATGAAAAGATCTATTTGA
AGTCAGAGAAAAAGGTTTCGAGAAAGTTTGACCACCAAGTTTTACTACAC
AggtttttttcaagtaaatttaATTCCCATCCGTTAAATTAAATTCCTGT
AAGTAATACCAATACAATTAACACGTGATTGTAACAACATCATAGTGACG
GACGACAGTTGTTGTTATTTTGTGATCTACGAAGAGTATCattaaaaaga
gacaaaagctttttttataaaaatagcgTTTTTCCACTGAGAGTGTAGTA
GTTAGTTAATAAAGATTTG Run BLAST on NCBI transcript from alignment at scaffold_117:431651..433519 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046861 ID=TCONS_00046861|Name=TCONS_00046861|organism=Clytia hemisphaerica|type=transcript|length=1869bp|location=Sequence derived from alignment at scaffold_117:431651..433519 (Clytia hemisphaerica)
CAAATCTTTATTAACTAACTACTACACTCTCAGTGGAAAAAcgctatttt
tataaaaaaagcttttgtctctttttaatGATACTCTTCGTAGATCACAA
AATAACAACAACTGTCGTCCGTCACTATGATGTTGTTACAATCACGTGTT
AATTGTATTGGTATTACTTACAGGAATTTAATTTAACGGATGGGAATtaa
atttacttgaaaaaaaccTGTGTAGTAAAACTTGGTGGTCAAACTTTCTC
GAAACCTTTTTCTCTGACTTCAAATAGATCTTTTCATGAATTATTTTGTG
AACATTAAGACAATTACCAAGGCAAATAGATCTCACAAACTCAAAATACA
TTGCTGTATAACTTGCGAACGTCTCACGGGAGGTCTAAACTGGTGCGGAG
TAGATCTCTGGTTGGTTTACATCTAAGAGAAAATCGATTGAGAAATACAA
AGGAAATAGtacgatttttctttatttctataTCAATGGAATAATAATCA
TAATCGAACAGGAACTTTTTTTATACATAGGTATGATAGACTAAAGATTC
TTTGGTGCACTTTGAAGTCAATGACCCTAATTCTGTGCTTAATTGAGTGA
TTTTAGTGATTTTCCCTAGGCAAATGAAGGTTTTTGACACTTTTGGGGTA
ACAGTAATAAAATAGAGGGAGGGGCCATTATGAATTTACTTAGAAGTGAA
AAGATCAAACAAATGGAaaaatacccccccccccccacaatAAACATTGA
AGAGTAATAACTTGACCCATTTACCAATCATTGGCAGACCAAGCCTATTT
TGTTTATCGAAGCATGATACGTTTTGGTTTTGGATAATGCTCCATTTTGC
acacatgttttcttttttaatttttcaaacgtTATGATTTTTTGGGCTTG
GGGTACGTATTTTCGACCCTACAAACTAGCATTTTGCGTTTGGCGATTGC
TCATATGGGGATTAATCTTaatagtttttggacctacagGTCTTATAAAT
CAACCCcttttaaagcctgaaaactgttaaaaatcgGGTTTGTTTGGACT
TGTGCAAAATTGGATcataaatttttcttatttttttatgaaagtcAAAT
ACCAAGAAGTCCATTTTTTACGAGATGGTTTTCATACATTTGAAATTGTA
ATCTTTGACACTGTTTATGTTTTGACATGAAATTTAGGTTGCTAGACATG
GCTTTTACTTGAGAATGAGCCGAATTTGTTCTTCTTTAGAAGCATAACAA
GTGAATTCACAGAAAAAGTTTTAATCATCTTTAATACTCATTAATTATCT
TTAAGAAAACCTTTCACGGATCGTTGTTCTTAACTAAACTGTTCCAGAAA
TGTTATTGTAACTAAAAATTATTCTGTTAGATTTCTTATACCAATGTTgt
tctttttatgaaaaaggcATTTAGTTTTTCTGGTCCACTTTTTTCTGGGC
ACTATATTATACCATTATATCAACATGTAAGTACTTGTAAACATTTGATA
TTTGAGTAAAGATATTTTGCTTCGAAGAAGTTGCTGCAATGGAAACATAA
CGTCTCTTACTTTTATTCCACATAATTATGTATGCCATGTGTGTACACAA
CATATAGAAAACGGCCctggccgaaacatgttggaaatttccagcatcta
atggtatttttatctcgatcctccgtccgataTACAACATATAAAATCTG
TACAGCTTGGcactacatatttttttatgagcataacgcttataagcata
tgaaggttcagatttgcagaattcctacgCATAACATAAGAATATATTAG
cctggaatatttttcaagttgtcattttttatctgtttaaaaaggtttgg
tagaggtcaagtaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046861-exon-scaffold_117-1491911889:431651..433519 | TCONS_00046861-exon-scaffold_117-1491911889:431651..433519 | Clytia hemisphaerica | exon |
| TCONS_00046861-exon-scaffold_117-1510915933:431651..433519 | TCONS_00046861-exon-scaffold_117-1510915933:431651..433519 | Clytia hemisphaerica | exon |
| TCONS_00046861-exon-scaffold_117-1575043694:431651..433519 | TCONS_00046861-exon-scaffold_117-1575043694:431651..433519 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:431651..433519 . |
Blast
The following BLAST results are available for this feature:
|
