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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046868 ID=TCONS_00046868|Name=TCONS_00046868|organism=Clytia hemisphaerica|type=transcript|length=960bp
ATCGAGATGTGATTTTTATGGTGATCAGTCCAACACAGGCTTGTCTCATG
GTTATCTTGAATATCGTTATAATTTGTATAATGACATGCTTCACCAAGCC
ATCTAAACGTCGTAAACTGATCTATTTCTTAAATCTTGCGTTATCAGATT
TATTCCTTGGTTTCATCGTGTTATTGGTCAAAGTTCTGGTCAGCTTGGAG
AAAACTAATCCAGATAATCAAATCTTGAAAGAGATTCGGATGTTTTTTCA
AATGAAAGTTGTCTCTTTATCATTGTATATTTCAGTTCTCAGCATTGCTG
CCATAACAACTGAACGTTTAATATTGGTTCTGTATCCTTTTAAATATAAC
AGGCTACGTTATTGGAAAAAATGCGTTGCATGTGGATTAATGTGGATGAC
ATCATCAACAGCAGTTATCACGATGCATTTTTTAGTTGGTGACGACAATA
AAGAGTATATTCTTACTCCAGCGTTAGCTTTATCAACTATGCTGCTAGCG
TCAATATCATTTGCTATGATACGTAGACACTTATCTCAAGCGAACCGGTT
ACTTAATAGAAGCATTTCAAAACCTGAAAAAGAGTTCACAAACTTTTGTT
ACCAGTCTTTTTTACTCTTCGTTGTTTGCTGGTTACCGATATCAGTTTTC
GGGATCATCTTCTCCAGTAATGTCATCGATGATTGGGAATATGTGATCGA
GTTTAGATTCACCTGTCACGTGATCGCCTTTACCAACTCTGTTTTATCAC
CCATTCTTTTTCTCGTACATTTCGCCAATAAACTAGGCTGTAAACGAGAC
CGTCATGAACAAAATGATACGTCGATTTCAGAGTCTACTGGCAAGACTTT
GGTAATGCGTTTCAGCAAATTGAAAGAAATGGATCGATTATCAATAGGTC
ATTCCTCAAAACAATCTTCTCCCAGTGTCTCTGtaaaagacaataaaaac
aGTGAAAGCA Run BLAST on NCBI protein sequence of TCONS_00046868-protein >TCONS_00046868-protein ID=TCONS_00046868-protein|Name=TCONS_00046868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
RDVIFMVISPTQACLMVILNIVIICIMTCFTKPSKRRKLIYFLNLALSDL
FLGFIVLLVKVLVSLEKTNPDNQILKEIRMFFQMKVVSLSLYISVLSIAA
ITTERLILVLYPFKYNRLRYWKKCVACGLMWMTSSTAVITMHFLVGDDNK
EYILTPALALSTMLLASISFAMIRRHLSQANRLLNRSISKPEKEFTNFCY
QSFLLFVVCWLPISVFGIIFSSNVIDDWEYVIEFRFTCHVIAFTNSVLSP
ILFLVHFANKLGCKRDRHEQNDTSISESTGKTLVMRFSKLKEMDRLSIGH
SSKQSSPSVSVKDNKNSES Run BLAST on NCBI transcript from alignment at scaffold_117:475339..476298 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046868 ID=TCONS_00046868|Name=TCONS_00046868|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at scaffold_117:475339..476298 (Clytia hemisphaerica)
TGCTTTCACtgtttttattgtcttttaCAGAGACACTGGGAGAAGATTGT
TTTGAGGAATGACCTATTGATAATCGATCCATTTCTTTCAATTTGCTGAA
ACGCATTACCAAAGTCTTGCCAGTAGACTCTGAAATCGACGTATCATTTT
GTTCATGACGGTCTCGTTTACAGCCTAGTTTATTGGCGAAATGTACGAGA
AAAAGAATGGGTGATAAAACAGAGTTGGTAAAGGCGATCACGTGACAGGT
GAATCTAAACTCGATCACATATTCCCAATCATCGATGACATTACTGGAGA
AGATGATCCCGAAAACTGATATCGGTAACCAGCAAACAACGAAGAGTAAA
AAAGACTGGTAACAAAAGTTTGTGAACTCTTTTTCAGGTTTTGAAATGCT
TCTATTAAGTAACCGGTTCGCTTGAGATAAGTGTCTACGTATCATAGCAA
ATGATATTGACGCTAGCAGCATAGTTGATAAAGCTAACGCTGGAGTAAGA
ATATACTCTTTATTGTCGTCACCAACTAAAAAATGCATCGTGATAACTGC
TGTTGATGATGTCATCCACATTAATCCACATGCAACGCATTTTTTCCAAT
AACGTAGCCTGTTATATTTAAAAGGATACAGAACCAATATTAAACGTTCA
GTTGTTATGGCAGCAATGCTGAGAACTGAAATATACAATGATAAAGAGAC
AACTTTCATTTGAAAAAACATCCGAATCTCTTTCAAGATTTGATTATCTG
GATTAGTTTTCTCCAAGCTGACCAGAACTTTGACCAATAACACGATGAAA
CCAAGGAATAAATCTGATAACGCAAGATTTAAGAAATAGATCAGTTTACG
ACGTTTAGATGGCTTGGTGAAGCATGTCATTATACAAATTATAACGATAT
TCAAGATAACCATGAGACAAGCCTGTGTTGGACTGATCACCATAAAAATC
ACATCTCGAT Coding sequence (CDS) from alignment at scaffold_117:475339..476298 >TCONS_00046868 ID=TCONS_00046868|Name=TCONS_00046868|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_117:475339..476298 (Clytia hemisphaerica)
GCTTTCACtgtttttattgtcttttaCAGAGACACTGGGAGAAGATTGTT
TTGAGGAATGACCTATTGATAATCGATCCATTTCTTTCAATTTGCTGAAA
CGCATTACCAAAGTCTTGCCAGTAGACTCTGAAATCGACGTATCATTTTG
TTCATGACGGTCTCGTTTACAGCCTAGTTTATTGGCGAAATGTACGAGAA
AAAGAATGGGTGATAAAACAGAGTTGGTAAAGGCGATCACGTGACAGGTG
AATCTAAACTCGATCACATATTCCCAATCATCGATGACATTACTGGAGAA
GATGATCCCGAAAACTGATATCGGTAACCAGCAAACAACGAAGAGTAAAA
AAGACTGGTAACAAAAGTTTGTGAACTCTTTTTCAGGTTTTGAAATGCTT
CTATTAAGTAACCGGTTCGCTTGAGATAAGTGTCTACGTATCATAGCAAA
TGATATTGACGCTAGCAGCATAGTTGATAAAGCTAACGCTGGAGTAAGAA
TATACTCTTTATTGTCGTCACCAACTAAAAAATGCATCGTGATAACTGCT
GTTGATGATGTCATCCACATTAATCCACATGCAACGCATTTTTTCCAATA
ACGTAGCCTGTTATATTTAAAAGGATACAGAACCAATATTAAACGTTCAG
TTGTTATGGCAGCAATGCTGAGAACTGAAATATACAATGATAAAGAGACA
ACTTTCATTTGAAAAAACATCCGAATCTCTTTCAAGATTTGATTATCTGG
ATTAGTTTTCTCCAAGCTGACCAGAACTTTGACCAATAACACGATGAAAC
CAAGGAATAAATCTGATAACGCAAGATTTAAGAAATAGATCAGTTTACGA
CGTTTAGATGGCTTGGTGAAGCATGTCATTATACAAATTATAACGATATT
CAAGATAACCATGAGACAAGCCTGTGTTGGACTGATCACCATAAAAATCA
CATCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046868-exon-scaffold_117-1491911889:475339..476298 | TCONS_00046868-exon-scaffold_117-1491911889:475339..476298 | Clytia hemisphaerica | exon |
| TCONS_00046868-exon-scaffold_117-1510915933:475339..476298 | TCONS_00046868-exon-scaffold_117-1510915933:475339..476298 | Clytia hemisphaerica | exon |
| TCONS_00046868-exon-scaffold_117-1575043694:475339..476298 | TCONS_00046868-exon-scaffold_117-1575043694:475339..476298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:475339..476298 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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