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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046870 ID=TCONS_00046870|Name=TCONS_00046870|organism=Clytia hemisphaerica|type=transcript|length=2433bp
AAATGGAGTACGCGGGAAAATTCTTCGCTGCTCCTGGTTTTAATGATTTT
CCTACTATTTCAATGTATTTATTTCTCCTTCTCATTTCTTCTCGTCAACA
GAGCATTAAAGTTCAAATGCTGGAAAGCTTCTATTCCTGGCTTTTCATCA
AGCCAGCGGGTTCAAATCTTTTTGCTTATATTCGACTtcagttaaaaaat
gaaataatataaaatattgtggatataaagaaatcaaaacaaaatgagaG
GATTGTACATACTTTTCTGCTTGACAATCGCCATCGTCCTCATCCATGCA
AAATCTATAAAGAAAGAAACAGCAAAGAAGAAGCACTTGACTCCAGTGCA
AGCACAATTCAAATCGCTGACTAACTCTGTCAAGAAAGAGCAGCAAAGGA
TCGCTGCAGCTGAGCGTAAATACAAAACCAACCCagAAGATGATGACATA
GCGAATTCGTATGAAAATACTGAGGATGAAGTTGAAGATGACGATATAGA
AGATGGAGAAACCAGAGCTGGAGGAATTTCTCCAACACCTATAAAACATA
AAGGATTAAAAGTGGCAGCTGCATTACCAGAACATGTCAAACCGTCGAAA
GATGCAGCCTTGCCCAATCCTCAAGAACCACCACAAGACCCAGCCGCTGG
AGGAGCAGATGATGCTGCAGACGACGGAGCTGATGATTCAACCGATGACG
CAGCCACCACAGGTACTGCACCGAACCCTGTCACACCAAAAGCAGGAGCT
CTCAATAAGCAACCTGCTATTCCTGCTCCTAAGCCTTCACCAGCGCAAAC
CAAGCCACAAGCGAGTCCACCAAAACCAGCTCAAAAAGCAGCTGAAAAAC
TACCGGCAAAACAACAAGCACAACCAGCATCACAACCATCACCTTATGAT
CCACAACAGATTGATCAACCGGGAGCTTTCGGATATCAACAGTCTCTACC
TGATGGAGGTGCAAGAGGCTACCTTATACTTGAAACCCATCGGTGACAGA
CGTGTGCGTACTCGGTATGAAGCTAATGGATGACGTTGCCGGAGCGACGA
AGATTTGACTTCCAGAAACGGTTTTGGCTGTGTTGGATGGAGTTCCAGAA
AGAATGGTACATGGAGAATGGAGATTCTCACCAACCAGTGAAGTTTTTCG
TACAATACTATCTGAAGGTACCCATACACCATTTGCTGTGCCAGTGGAtg
ccgccatctttgctgaatTTCTtcggttgatgacgtcattaattgAAGGA
ACTTTAGTTGATTCATATTCACCGTCAAACACGTTTGGTATGCTCTCTTT
GAAAGGCGTGGATGAGTATTTGCGAATGTGAGATTCAGCTGATAACCTCG
GTGAACCAACACTAAGACTCTTGGACATATTCCTGACGCTACGATTGGCT
CTACCAGATCGTGAACCAGAATGACTCATCACAGAGCGCGCAGAGTGCGA
AGAACCCATCTGTTTGGTTGAGTTTGCAGAGGAAGGCAGGAATTTGACTG
AAGATACATTAGGCTTCATGCTGTTGATGGATTGGTTATAAATGATATCA
GTGCTTGTCTGTTGACGGGAATCCACTTTGGCTGGCATGTTGTTGTTGCT
TGTTTTGGAAGGCACTATCTCGATACTCTGTTTACGCACCGAAGCATCTG
AGGGTCGACCCAATTTGGCTACATCGTCAAATGTCAAGGAAACTTTGGAG
ATATTACCGATGGACATAGGTGTGCTACCAGCTGAATGAACAGGCCCGAA
TCCACTTCGTTGTGGTCTAGCAATACGATCAGCTGACTGTGGATAAACTT
TGGATGGTTGTGATGATAGTGCTTCGTTTTCAGGGATGTCATCAAGTTCT
CTTACACTCAATTGAGCACCGATGCAATCAATGTTGTTGTTCTTCATCGA
TGGATCTTCTTCAAGTGGTTTGTCTTTCATCTCAAAGCTTTCTATATTTG
AAGAATCTTTGCCACTTGTAATTGGTTGGTTATCTTGCAATACATTTTGA
GCAGCAATTTCTTTTGATTGCTCCTGCTTATTACAAATATCAactgaatc
aattttttgttcttGAGCGTCGTCTTTTACAAttgaatcgtcaagttgaa
taGAGTCCTCGATTTCTTCAACTTCCAAAGGTGTTTGTTCGACTTTTCTG
AAAGATGATGTTGAATGTTTGACTGAATCTCGTTTGATGAGGACTTCTTC
TTTAGATTCAACACTGGCGAAACTGGtgtgatattttttgttctCTTGCA
CAGCACCGACTGCAGTCGAAGGAGCATTGAAGACCGATGACTTGGATTTG
TTTGaccttttcttcttcatttttcgagATGACTTCACTTTTACTTCTTC
CGTGTCCACTTTACTGTTGTGAACAGACTTTGTTTCTTTCACTTCCGTGG
CTTTAGACGGGCTTCGCTTAAAAAGTTCCTTCG Run BLAST on NCBI transcript from alignment at scaffold_118:275..7330+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046870 ID=TCONS_00046870|Name=TCONS_00046870|organism=Clytia hemisphaerica|type=transcript|length=7056bp|location=Sequence derived from alignment at scaffold_118:275..7330+ (Clytia hemisphaerica)
AAATGGAGTACGCGGGAAAATTCTTCGCTGCTCCTGGTTTTAATGATTTT
CCTACTATTTCAATGTATTTATTTCTCCTTCTCATTTCTTCTCGTCAACA
GAGCATTAAAGTTCAAATGCTGGAAAGCTTCTATTCCTGGCTTTTCATCA
AGCCAGCGGGTTCAAATCTTTTTGCTTATATTCGACTtcagttaaaaaat
gaaataatataaaatattgtggatataaagaaatcaaaacaaaatgagaG
GATTGTACATACTTTTCTGCTTGACAATCGCCATCGTCCTCATCCATGCA
AAATCTATAAAGAAAGGTAAGTGGATTTGACAACATGAAAGATAGTATGG
CAAAAGTAGATTGAAGGCAGATAACGAAAAATCGTTATTAAATTGAAATT
CTTTGAGAGAACGTGGAAAGATAGATAACCAAGAAGATAGATATCagata
ttcaaaattgaaatattttctcaatTGCATTTTTACAGTCTCGTTATATC
GGGAAAGTACCTATTATTACTTACTCACggtatttcctttttttaatcTA
GAAACAGCAAAGAAGAAGCACTTGACTCCAGTGCAAGCACAATTCAAATC
GCTGACTAACTCTGTCAAGAAAGAGCAGCAAAGGATCGCTGCAGCTGAGC
GTAAATACAAAACCAACCCaggtaaacattttcaaatatatGTATTTTGA
GTTCAATTACATATATCCAagtgtgtttttatagaaatcctCGTTCTATT
GGTATATCGCAACTCATATGTagctaggctgctggcatccactaacaggT
TCGTGCTCCTTATGGTTTTGTAGAAATCTGTGACTAATATGTTGCACATC
TGAAACGAAAGGGAGAATCCACagaattaaagtttgaaaatgctTCATGT
TCCGTATCGTTACGGCCGTCAAGAAATTACTGTGATGCGAAGAGATTtaa
tcttatttttcttttgggTACGAACAGAAGATGATGACATAGCGAATTCG
TATGAAAATACTGAGGATGAAGTTGAAGATGACGATATAGAAGATGGAGA
AACCAGAGCTGGAGGTGAGTAATTCTCTACAACGATCACGACAAACCAAA
AGACTTATATCacttcaaaaataattgaaacaaGGACGAGATCGTTTCTG
GGAATATTTTATTATTCAGCATTTTGAGAGGATTTATGGAATTTATTCTT
GACGATTATGgagaatgaaatatttttttacttttacttcCTCTTAACGG
GAAAATATCGATGGGTTGTGTGGCGTTAATAAGCCAATCCAACTTCTAGA
AAACTCTGTTTTCAATTACAATATCAATGTATTTATACTGAATTTATTCA
TGTAGGAATTTCTCCAACACCTATAAAACATAAAGGATTAAAAGTGGCAG
CTGCATTACCAGAACATGTCAAACCGTCGAAAGATGCAGCCTTGCCCAAT
CCTCAAGAACCACCACAAGACCCAGCCGCTGGAGGAGCAGATGATGCTGC
AGACGACGGAGCTGATGATTCAACCGATGACGCAGCCACCACAGGTACTG
CACCGAACCCTGTCACACCAAAAGCAGGAGCTCTCAATAAGCAACCTGCT
ATTCCTGCTCCTAAGCCTTCACCAGCGCAAACCAAGCCACAAGCGAGTCC
ACCAAAACCAGCTCAAAAAGCAGCTGAAAAACTACCGGCAAAACAACAAG
CACAACCAGCATCACAACCATCACCTTATGATCCACAACAGATTGATCAA
CCGGGAGCTTTCGGATATCAACAGTCTCTACCTGATGGAGGTGCAAGAGG
CTACCTTATACTTGGTATGTTGCATAAATTTTAGtctctagaaacctttg
tgtgctatttttaataaaaaaaaaaatctaggggtttgttcgaaaaaaaa
tagtttgttttgattgcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACCACCCCCACCACCC
CCAGTTTGTCAACCAGTCTGTCCGCCACCACCGCCACCTTGTATGGCTCC
ACCATGTGCTGTACCACCACCTTGCACTCCATGTGCTGCACCAGCCATGC
CAGCATGTCAACCTTCCTGCCCACCACCTCCCCCACCCTGTATGGCTGCA
CCTTGTCCACCACCACTACCTCCTTGCACACCATGTGCTGCAGCAATGGC
ACCTCCACCCTGCCAACCTTCTTGTccgccaccaccaccaccatgTATGG
CTGCATCCTGTCCACCTCCTCCACCACCTTGTACCCCATGTGCTGCAGCA
ATAGCCCCTCCTCCTCCtccacctccaccaccaccaccaccccCGCTATC
CCCGCCAACAGCCTGCGAATCTAATTGTACACCTGCTTCCTGTGATGTGG
GCTGTCCTACTCAATGTTGTTCTTCGGACCTCGACCGTAGATCGTCGTTA
ATAAGACTTTCAATGTTTTCAAGGAAACACAAGAACAAGAAGAAGTCACG
GATTTCAAAACACCACCATTAAACCAGACTGATTTTTAAATGTTGGTTGT
ATGATAAAATTGTGAATGTTGGAGATGAGATGTCGGCTTGGAGTCTCcta
tttaaagcttttttccttatttttgtaatatagaatttttaaaatatgta
gcaaaaaaacaaacaaaaacagtaTACCAATACGGCCGACATCCAAATAT
GTTTGGAATTACTTTATGAACAAATAGATATGATGAAGCAAGTATCATCT
GCTGATGTCTCTTAGATGTTAGTAAATTCTTCTACCACAAAGGAGCATCA
TTTTCCCAACAATAAAGCGCCACAACAATGATATTGAGCGCCTTGCACGA
ATATCTGAGTCTAAGAATATGCACACTGTCATGCATACTCATTCAAAGTA
CAAAATGATAAGTACGTGTATAAAATGATGGGTCCAAAAAACTCCATAAA
AATgcatgaaaatatgaaatctaTAAAAGATATTCACGAGCAGGGTTTGT
TACAGGTTTTAAAGTCGATgtttcaatataatttgcagcggaggaaaaag
gctataacttttgatagaattcgaattaggtAGCGGTGCTCGTTTAAAAA
ATATTCCTCgttttcaatcattttccaatATCGTTTTTgaactctttttt
tatgataacattccactcctgtttatcttttagggagtggtcagaaagta
tctactacaTGCAAAATGTTTTCGAACGCCCCCTCTCAAAAAGATTTTGC
ACCCCCtactttcttaaatttttttccccTACACTCTAACTGACCGATTA
ATAAGGTAAGGGTTATACTTACTTCTACTTATATTTGGATAAGGGCGACT
TGTCACATATAAATCGGGTTTAACTACAGTAAATTTCCAGATTGTCAGTG
ATCCTATAGTAAGCCTCGATATCAAAATGTTGTGTACTCATATGGGGGAG
GACTAGAAGGCAGCAATGGCTTGATTTCAAACTTGCAGGGGCAAAAAATT
TAGTGACAAAGGAGGCAActggtttgcgccgacaggaaaaaattttgatt
ttagactCTCACTGCAGATTATATCGAGACAAACTTATTAAGAACTATAA
ATCAAATGACAggcgaaaaaaatgaaacaaaacctTATTGTCAAGCAAAC
AGTCCAACATCATTATATTCTCCTTTTGACTTCACAGTTCATCATTATTA
TTATCTTTTTAGTCATTTCtgtaaaatagaaaattaaataaatttttttt
gaggggTGCGGCCTTCAAGGGTGTGTTTcttaaagttaagaaaatgcact
gtaagggtcgaaatgagcgaAGATGAGTGAAAGTACTCTAAGGGggtaaa
aaatttcaagaaaatcgaTTCTTaacaaatttactcaaattttactAAAT
TTTAAAGGGTTGGaattcaaaggcctaatttttaATCAAGCCCCCCTTCT
CCCGGGTTTTCATCCGTTTTCCCTGACCTGAGGAAGCTTTGGTGGAAGAC
CAACTCTCAATAGGCATTAATGTGTcatcagattttccaaaaaatattga
ttcgATGGTTCAATGTGGTTCAGTTTACAAATTTTTAGTATTATCGACTT
GATCAGACTTGATACCTTTGCAAAACTTTTCTATAGAATGAAGTGAACTG
AAACACTGTATGAGTCAAAGAAAACTAACCCTTCAAAAAAgattattggt
atatatttttgcgtgttacaaattttcgcgggtacttaatttcgcgagtt
ttttggtcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTtctaataaaattcaa
atttttgaaaaaatataatacaaAAGTTATTTACGTCATTTACTTAAAAA
TCTAAAGGTATTCATACATAGGCAATTTCTGAGCTTATTTTAGATGCTTG
CAAAAAGACCAAAAGTTAGAGagttaaaaaacaaattaaaatgaataaaa
atgaatgtaaaaataaaattagctAGGATTTATCATCAGATTTGTTGTTT
TTAAGAAACCCATCGGTGACAGACGTGTGCGTACTCGGTATGAAGCTAAT
GGATGACGTTGCCGGAGCGACGAAGATTTGACTTCCAGAAACGGTTTTGG
CTGTGTTGGATGGAGTTCCAGAAAGAATGGTACATGGAGAATGGAGATTC
TCACCAACCAGTGAAGTTTTTCGTACAATACTATCTGAAGGTACCCATAC
ACCATTTGCTGTGCCAGTGGAtgccgccatctttgctgaatTTCTtcggt
tgatgacgtcattaattgAAGGAACTTTAGTTGATTCATATTCACCGTCA
AACACGTTTGGTATGCTCTCTTTGAAAGGCGTGGATGAGTATTTGCGAAT
GTGAGATTCAGCTGATAACCTCGGTGAACCAACACTAAGACTCTTGGACA
TATTCCTGACGCTACGATTGGCTCTACCAGATCGTGAACCAGAATGACTC
ATCACAGAGCGCGCAGAGTGCGAAGAACCCATCTGTTTGGTTGAGTTTGC
AGAGGAAGGCAGGAATTTGACTGAAGATACATTAGGCTTCATGCTGTTGA
TGGATTGGTTATAAATGATATCAGTGCTTGTCTGTTGACGGGAATCCACT
TTGGCTGGCATGTTGTTGTTGCTTGTTTTGGAAGGCACTATCTCGATACT
CTGTTTACGCACCGAAGCATCTGAGGGTCGACCCAATTTGGCTACATCGT
CAAATGTCAAGGAAACTTTGGAGATATTACCGATGGACATAGGTGTGCTA
CCAGCTGAATGAACAGGCCCGAATCCACTTCGTTGTGGTCTAGCAATACG
ATCAGCTGACTGTGGATAAACTTTGGATGGTTGTGATGATAGTGCTTCGT
TTTCAGGGATGTCATCAAGTTCTCTTACACTCAATTGAGCACCGATGCAA
TCAATGTTGTTGTTCTTCATCGATGGATCTTCTTCAAGTGGTTTGTCTTT
CATCTCAAAGCTTTCTATATTTGAAGAATCTTTGCCACTTGTAATTGGTT
GGTTATCTTGCAATACATTTTGAGCAGCAATTTCTTTTGATTGCTCCTGC
TTATTACAAATATCAactgaatcaattttttgttcttGAGCGTCGTCTTT
TACAAttgaatcgtcaagttgaataGAGTCCTCGATTTCTTCAACTTCCA
AAGGTGTTTGTTCGACTTTTCTGAAAGATGATGTTGAATGTTTGACTGAA
TCTCGTTTGATGAGGACTTCTTCTTTAGATTCAACACTGGCGAAACTGGt
gtgatattttttgttctCTTGCACAGCACCGACTGCAGTCGAAGGAGCAT
TGAAGACCGATGACTTGGATTTGTTTGaccttttcttcttcatttttcga
gATGACTTCACTTTTACTTCTTCCGTGTCCACTTTACTGTTGTGAACAGA
CTTTGTTTCTTTCACTTCCGTGGCTTTAGACGGGCTTCGCTTAAAAAGTT
CCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046870-exon-scaffold_118-1491911889:275..590 | TCONS_00046870-exon-scaffold_118-1491911889:275..590 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1510915933:275..590 | TCONS_00046870-exon-scaffold_118-1510915933:275..590 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1575043694:275..590 | TCONS_00046870-exon-scaffold_118-1575043694:275..590 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1491911889:826..945 | TCONS_00046870-exon-scaffold_118-1491911889:826..945 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1510915933:826..945 | TCONS_00046870-exon-scaffold_118-1510915933:826..945 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1575043694:826..945 | TCONS_00046870-exon-scaffold_118-1575043694:826..945 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1491911889:1252..1338 | TCONS_00046870-exon-scaffold_118-1491911889:1252..1338 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1510915933:1252..1338 | TCONS_00046870-exon-scaffold_118-1510915933:1252..1338 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1575043694:1252..1338 | TCONS_00046870-exon-scaffold_118-1575043694:1252..1338 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1491911889:1630..2088 | TCONS_00046870-exon-scaffold_118-1491911889:1630..2088 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1510915933:1630..2088 | TCONS_00046870-exon-scaffold_118-1510915933:1630..2088 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1575043694:1630..2088 | TCONS_00046870-exon-scaffold_118-1575043694:1630..2088 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1491911889:5880..7330 | TCONS_00046870-exon-scaffold_118-1491911889:5880..7330 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1510915933:5880..7330 | TCONS_00046870-exon-scaffold_118-1510915933:5880..7330 | Clytia hemisphaerica | exon |
| TCONS_00046870-exon-scaffold_118-1575043694:5880..7330 | TCONS_00046870-exon-scaffold_118-1575043694:5880..7330 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:275..7330 + |
Blast
The following BLAST results are available for this feature:
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