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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046892 ID=TCONS_00046892|Name=TCONS_00046892|organism=Clytia hemisphaerica|type=transcript|length=1178bp
agTTTTCTTCAAGGTCTTTAATATACTTTGACTTACTTTTATCAGGCTTG
TCCGGAGAAGTGTGACAACCACGCGGCATGTGTGTTATatcaagctttcc
aaaaatgcatCAAAGACGATTGTAGTGATTGCAGCCTCAATATCAAATTT
GTCAACGAAACCGAACCCAATTGTGTTTATAATGATGATGGCTGTCTGAC
TGTTTTTAATTTCGAGAAGAATTTTGGTAGCGAAAACGAAACGGTCCTTG
TTGTCAAGGAAAGAAAATGCAGTCAGAAATTGACGGAGGAGACAAAGATC
TTGGTAATCGTTTTGGGTACGATTGCTGGTATTGTTTTAGTtggtttgtt
gttgttgatcaTCTGGAAGCTGGTCGTCACTGGATTTGACAAATATGAAT
ACCACAAGTTTGAAAATGACAGAATGAAATCGAAATGGGAAAAGgctgaa
aatccCATTTACAAGGGTGCCAAACAAGAATATCAAAACCCAACCTACGC
TGGtcacaaataatttttttttgttaataatgtttttatatatattttgg
tatttttctaaaatctttgtgaatattttctctattgaatttttattata
tCTCTTATAAATTTTACCTTTCGTCTCTTTTATAATATGAAtattaattt
aattttgataacGTTCAGGTTAGtagaattttctaatttttagaTGGGGA
TAAATTTAAACAGGAGACATAACAAGAAGGAGTTTGGCATGAAAACTTGA
TAAAAACCCGATGTCACCAATATTTGTTACGCTTTAAGGCCGATTTGAGT
TATTGCTCTTANGAATccttaaatttaattttattttgataacgTTCAGG
TTAGtagaattttctaatttttagaTGGGGATAAATTTAAACAGGAGACA
TAACAAGAAGGAGTTTGGCATGAAAACTTGATAAAAACCCGATGTCACCA
ATATTTGTTACGCTTTAAGGTGATCTTATAATGCTTTCACTTGTAATGTG
TGGTACAACGAGTATGATTAAATAGCTTTCTCCCTTTTGTACTCTTGGGT
TAACTTATCTCATTACTGTCTAGATCAATACATACTTTCAAATTGTTTAT
AGAACTTTCTTATATTATGTAATTATATTCTTTCTACTTGTATTTTCCAT
ACAAAAGAATTCGAACTCGTTATAAAAT Run BLAST on NCBI transcript from alignment at scaffold_118:144301..147975+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046892 ID=TCONS_00046892|Name=TCONS_00046892|organism=Clytia hemisphaerica|type=transcript|length=3675bp|location=Sequence derived from alignment at scaffold_118:144301..147975+ (Clytia hemisphaerica)
agTTTTCTTCAAGGTCTTTAATATACTTTGACTTACTTTTATCAGGCTTG
TCCGGAGAAGTGTGACAACCACGCGGCATGTGTGTTATatcaagctttcc
aaaaatgcatCAAAGACGATTGTAGTGATTGCAGCCTCAATATCAAATTT
GTCAACGAAACCGAACCCAATTGTGTTTATAATGATGATGGCTGTCTGAC
TGTTTTTAATTTCGAGAAGAATTTTGGTAGCGAAAACGAAACGGTCCTTG
TTGTCAAGGAAAGAAGTAAGCAATTTACTAAAACTCAGTATTGTCTTCGA
AAAACTTACAAAATTTACCCAAAACTCCTATTGCAATGGTTACAATAATA
GCTCTTATATCGAAGAATTCACAATCTAGTCCTACAAGTTATTTATTCAT
CAATATCATGGAGTGATTGATATTCACCCAACCTCCATATGTTTTTCTGT
TTAGAATGCAGTCAGAAATTGACGGAGGAGACAAAGATCTTGGTAATCGT
TTTGGGTACGATTGCTGGTATTGTTTTAGTtggtttgttgttgttgatca
TCTGGAAGCTGGTCGTCACTGGATTTGTAAGTTTGACCATTTGCTTTGTC
CCGATAAGTTCTTTCCTTTCCAGATATGTGGATTATGAAATCTTTAGGAA
GCTCAAACAAGACGAGCCCTTTCCCGCTTTGCTTATCACTTTTTAGAATG
CTCAAAATTAAAGATATCCTCATGGATATCACTTAGGTATTGATGTATTN
CTTATGGAACACTGAAGtcggtttgtcggttgtcggccagtggacaacag
ttatatttggaggacggtctaagatagataacaacatgaaagttactgat
aaaagcctaagcccataggaacatacctgctttagtttcttttgtctttg
aatggtataaaatttgagaaagtgcagaaaaaatcagccatcaaaacaaa
caaaaacaaaagttatgattatatcaacttttctgtggtagaaacacatt
tttttgagttggtgcacatacagaaattacactggatactaaaactaata
ttcagggagtgataagtacagttaaactacaaaaaatccatcaaaagaaN
CTAGGAAGCTCAAACAAGACGAGCCCTTTTCCGCTTTGCTTATCACTTTT
TAGAATgctcaaaataaagatatcctcATGGATATCACTTAGGTATGGAT
GTATTTGCTTGCTAATAATATCGGATAATTAGCGATCtagacagttagcc
taactcgtcagttaGACTGTTTACTCGTCACTACAAAAGTTCTTGGGTCA
GGGGTTTGGAGCTCGAGTCTCGAGCTTATCtgacccgatgtagaaatttt
cttccgacacgctaaagctctgaaggtcgggaaaattttNAGGGTGATTG
TGTTTATGCTCTATATCTATGGTACATCTAAATGGAGTTGGTTGTTCATT
AGGATCACTTTTAAGTATCTTAACCGACATCTGAAAGGGACAAAAAGTAT
TCCTGAATCTTTTGGTTGGTTTCTTCTCCAATATTGACTTGACATCTCTT
GTCTTTTCGTACCTTGTGTCGTGGTAGCATCTATAAAACACTCGCTCCGA
ATAGATACTCTTCTCAGTGTTCTTTTTTCGGGTCCTAATTTTCAAGGTTT
CACCTGTGTATTTTGAGTaggtttcaataaaattttttgagatCTGTGCT
GAAAGATATATCACATTTTATCTCAATATCAgtttcatgattttcatcac
aAGAAAATGTAACAATTTCGTACTTTGATTCgatttcctcaaaaatatcA
GCAATCAAATCCCTCTCCATGTTTACAAGAGTGCCATCATATTTTCATGT
GACTTATCacgaaaagaatttatttctcgaaatattaaaaatttattgCT
TGAACGGCAGTTTGGTGCGAAAAACTTTCATGCGGCAAAGAAAGGTATTC
GTCCGCTGGCTCAGATTTAGATTCTCAAATTTCTAAGTTttgcaggtctt
cggccgtttgtgtaggtcttcggccgctgaaaactgatcgcacattaaat
aagtaggtcttcggccgttagcgtaggtcttcggccgctggaaaaccgca
cattaaagttttaaaggtattcggccgctagcgtaggtcttcgttcgttg
acggaaaaaaaatccgCTACGGCGACCTCTATGAATTGAACGACGGCCTC
TGTGCTTCGGATTTTTGATCCCGACCCCCCCTGAtagtgggcggccgcca
atacgccatcggaatatcagataagtctCGAGCGCGCACAAAGTGAAATC
GTTCTAGAATATCTACAAAATTAGTTGAATTCTATATTCTACATTATATG
TCGATATTAAAGAGTGCTGTAATTCTACAGACGTCCGTAGAATTAAGAAC
ACTTATACATCTActtattttgtagattttctagTGAGACTGGCCTGTAT
ACAGTCACTATCTGGTTTATGACTGCATTTTAGATTATTTAGAAGAAATC
GTCTTTTTTTGAATGGCTGTTATTTCTAATCGTTTTTGCATTTCAGGACA
AATATGAATACCACAAGTTTGAAAATGACAGAATGAAATCGAAATGGGAA
AAGGTAAGAAATCAATCATGTCATTAAAGTGATGATAGAGGATCGACTGA
TTTTTGCATGAAACAGAGCTTGTAACTTGTTACAAAGGTTGCCGTAATTT
TCCTTCGCTATTTCTGAAAATGAACACCAGAACTTTATTCCTTTAAATTT
GATAATCCTTAGTTCTCCTGACTTCATTGTAATTATGATAATAGTTTTGT
GCTTATTCGAGTTTTTTGAGACGGTATTTTGAATTATTAAGTTTAACATC
AACGAGGAATATTTTGAATTACTAAGTTACCAACCTCGCATCCATCACAT
AGCGCCTATCGTATTTTTTTACCTCTATCTTGttatttcaggctgaaaat
ccCATTTACAAGGGTGCCAAACAAGAATATCAAAACCCAACCTACGCTGG
tcacaaataatttttttttgttaataatgtttttatatatattttggtat
ttttctaaaatctttgtgaatattttctctattgaatttttattatatCT
CTTATAAATTTTACCTTTCGTCTCTTTTATAATATGAAtattaatttaat
tttgataacGTTCAGGTTAGtagaattttctaatttttagaTGGGGATAA
ATTTAAACAGGAGACATAACAAGAAGGAGTTTGGCATGAAAACTTGATAA
AAACCCGATGTCACCAATATTTGTTACGCTTTAAGGCCGATTTGAGTTAT
TGCTCTTANGAATccttaaatttaattttattttgataacgTTCAGGTTA
GtagaattttctaatttttagaTGGGGATAAATTTAAACAGGAGACATAA
CAAGAAGGAGTTTGGCATGAAAACTTGATAAAAACCCGATGTCACCAATA
TTTGTTACGCTTTAAGGTGATCTTATAATGCTTTCACTTGTAATGTGTGG
TACAACGAGTATGATTAAATAGCTTTCTCCCTTTTGTACTCTTGGGTTAA
CTTATCTCATTACTGTCTAGATCAATACATACTTTCAAATTGTTTATAGA
ACTTTCTTATATTATGTAATTATATTCTTTCTACTTGTATTTTCCATACA
AAAGAATTCGAACTCGTTATAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046892-exon-scaffold_118-1491911889:144301..144565 | TCONS_00046892-exon-scaffold_118-1491911889:144301..144565 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1510915933:144301..144565 | TCONS_00046892-exon-scaffold_118-1510915933:144301..144565 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1575043694:144301..144565 | TCONS_00046892-exon-scaffold_118-1575043694:144301..144565 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1491911889:144755..144876 | TCONS_00046892-exon-scaffold_118-1491911889:144755..144876 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1510915933:144755..144876 | TCONS_00046892-exon-scaffold_118-1510915933:144755..144876 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1575043694:144755..144876 | TCONS_00046892-exon-scaffold_118-1575043694:144755..144876 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1491911889:146847..146903 | TCONS_00046892-exon-scaffold_118-1491911889:146847..146903 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1510915933:146847..146903 | TCONS_00046892-exon-scaffold_118-1510915933:146847..146903 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1575043694:146847..146903 | TCONS_00046892-exon-scaffold_118-1575043694:146847..146903 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1491911889:147242..147975 | TCONS_00046892-exon-scaffold_118-1491911889:147242..147975 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1510915933:147242..147975 | TCONS_00046892-exon-scaffold_118-1510915933:147242..147975 | Clytia hemisphaerica | exon |
| TCONS_00046892-exon-scaffold_118-1575043694:147242..147975 | TCONS_00046892-exon-scaffold_118-1575043694:147242..147975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:144301..147975 + |
Blast
The following BLAST results are available for this feature:
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