TCONS_00046893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046893
Unique NameTCONS_00046893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046893 ID=TCONS_00046893|Name=TCONS_00046893|organism=Clytia hemisphaerica|type=transcript|length=2069bp
tttaaatttcgagaaaattacttttaaagagagaaacttttttgtggcgc
acccggtataaacttctctcagggattacttagtcgatgtgttgtgtcaa
cttgtcagcattgtattgttgttaagggaaagataaaagaggtaagacta
gcctagtttcttaTCCTGATATAGAagtttaagcttagactgtGGTTTCC
TTTTTTCACTGAGCATAGAATTTAATTTAACAGAATAATTTGTAAAGATG
AAACTATCAAACAAGCACCTTGAAGCTCTTGAAGCAGATCATTTCCACCA
TCTTGGTTTCGATACACAGAGTGTTGACGTGAGGAAAAAATTCAGTGATG
TCAAgTTTGTTTGTGTTAGTGGCAGCAGCAACAGAATTTCCAAATTTGCA
AAGTTCATCAATAGCCAACTTCAAGTACTGAAAGATGAGGACATTGTCAA
TCTATGCACTGGTGATCGCTATGTCATGTATAAAGTTGGTCCTGTTTTGA
TGGCTAATCATGGCATGGGCGTCCCCTCAACAAGCATTTTGATGCACGAA
CTATTCAAACTATTACATTATGCTGGTGCAGAGGATGTTGCTTTCTTTAG
GATCGGAACATCTGGAGGATTAGGTTTGACACCTGGAACAGTTGTTATCA
CAAATCGTGCCCTGAATGCATAtgctgagccaaaatttacacAGGTAGTG
CTTGGGAAAACTGTGGAGCAAGATGCATCATTTTTGAACAGTATATCAGA
TGAGTTGATGTCGTTGACGCGTGATAGCGAAGAGAAAGTCTTGTTCGAAG
TGGTCATTGGAGATACCATGTGCTGTGATGACTTCTATGAAGGACAAGCG
AGGCTGGATGGAGCTTTTTGCAACTATACTGAAGAAGATAAGATGGGATA
CTTGAAGGAACTTCACCAAAAAGGTGTTCGTAATATCGAAATGGAATCCA
CCCTTTTCGCGTCGCTTTGCAATCGAGCTGGTATCAAAGCAAGTGTTGTT
TGTGTGGCCTTGTTGGATCGGTTGCTAGGTGACCAAGTAAACATCACCAA
GGAGATGAAAACAGAGTTCGAACAACGCCCTTGGTGGGTAGTTTTGAAGT
ATATTAAAAAACACATCTCAAAGTAAATGTGTACAACGTTAATATTGACT
TACAGtatcaaattaggtatttttaaagtattttgcAGTTTCCGAATGGC
ATTTGAATTTTTAtacgtttttataagcattcaGTATCCTAGCGCTTTCA
ACAAAGGTATACGATGGGGAGATAGGAATGAAGAGAATTCTCATTGCAAA
GATTCTATTATAATACTGCATTTAAGAGAATTAGGCCAAAATTGGAAAGC
CATAAGCCTTTTTATTAATGTCCAAGTCTGTCTTAAAATTCTTGAAGATT
ACTAAGCTAATTGTCTGGCTATAGTTTTAAAAAGGCAGGCTTTAGATTAA
GGCTCGTCTAGAAAAAAGCTGATACGGTTTACTTCCCAGCAGGAACCCCT
AATAATATATGACGAATTTTATTGCCCTTTTTGTTcagttattttgtatt
tatcgtTTTccgaaattgttttttttttttttttttactttgtattGTTT
ATTAAAGCATTTGGGAGATTCTTTATGAGTTGGTATCGTTCGCATATTTC
CCTTGATACGCTTTTTAATCCTCTTTTGATGATAAGGAATCATtccgttt
tgaatttttgttgatTATATTTTGTTTAGTTTTATTAATATTTGATAGAA
AAGGCTTTATTATCAGACTTTTGaagtcatttattttttaatgaaatctt
ATTTTGATGTTGTACTATTTATATTATTTGTGATCAGACAAACTGTCAAA
AGAATTAGTATTTAGTGAAATGTACATCAAGACTCGCTCTATCCCCGCCC
CCTTCTTACGTTTCTTGTCACTCCGAACTTTGTCCAGTAAGGTTGAAACA
GTCTATACCAATAGTTTTTTGAGAGGGGTTTTTTTGCTAAGGCCtaggaa
tatttttttaggactcaAAAACTGAGGTCACAAGCAAAACCCCTCATCCC
CTaaaatttgacgaaattt
Run BLAST on NCBI

protein sequence of TCONS_00046893-protein

>TCONS_00046893-protein ID=TCONS_00046893-protein|Name=TCONS_00046893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MKLSNKHLEALEADHFHHLGFDTQSVDVRKKFSDVKFVCVSGSSNRISKF
AKFINSQLQVLKDEDIVNLCTGDRYVMYKVGPVLMANHGMGVPSTSILMH
ELFKLLHYAGAEDVAFFRIGTSGGLGLTPGTVVITNRALNAYAEPKFTQV
VLGKTVEQDASFLNSISDELMSLTRDSEEKVLFEVVIGDTMCCDDFYEGQ
ARLDGAFCNYTEEDKMGYLKELHQKGVRNIEMESTLFASLCNRAGIKASV
VCVALLDRLLGDQVNITKEMKTEFEQRPWWVVLKYIKKHISK
Run BLAST on NCBI

transcript from alignment at scaffold_118:156671..163289+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046893 ID=TCONS_00046893|Name=TCONS_00046893|organism=Clytia hemisphaerica|type=transcript|length=6619bp|location=Sequence derived from alignment at scaffold_118:156671..163289+ (Clytia hemisphaerica)
tttaaatttcgagaaaattacttttaaagagagaaacttttttgtggcgc
acccggtataaacttctctcagggattacttagtcgatgtgttgtgtcaa
cttgtcagcattgtattgttgttaagggaaagataaaagaggtaagacta
gcctagtttcttaTCCTGATATAGAagtttaagcttagactgtGGTTTCC
TTTTTTCACTGAGCATAGAATTTAATTTAACAGAATAATTTGTAAAGATG
AAACTATCAAACAAGCACCTTGAAGCTCTTGAAGCAGATCATTTCCACCA
TCTTGGTTTCGATACACAGAGTGTTGACGTGAGGAAAAAATTCAGTGATG
TCAAggtaaattttttacaaaatgtatGTATGTTTTTGCTATTATTATAT
GTTGGATATATATATAACGCATATAAGGGTTCGTTAatgggcaggtctaa
aacgcctaatacctactacttaatacttactacctaatacttaatattta
atgtatatacctcaaaattgctcgaaaatacttttaaaataaTCAGCATG
CCCAATTCAACCTAAtctgaaaatttggtgttaaaaaaatttcaactttt
tgtcttatagcgttttgaagacatgaaaatatttgctctctttttttctc
ttcactttattttcccgcgctttttctataTAGTTTACAGACTACACAGA
TTTTGTCGAGACACACTTTTTCGTAGTAGAAAAATATTTCGTTTGCTGAT
TATtagctttatttataagaatcagtcgatctgaaaatttaaattaagtg
AGTATGCCCCTGTTTCATTGGGGCAAGTAACTGAAGTATATAGATTGCCG
AGAATATTTTGACATGACttgattttattacaaaccTGATTACAAATGAC
CCTTTCGAGCCAgaatattgacagggtcatttAATATGACCTTTTTAAAC
TTGATTATAGTAAGAATTATTAATGTGCTGAATAAGATGCTTTTTAAATA
TCACTAGATAGAAATTTCTAGTAGAAGTGAACTTTTGCCTATTATTGACC
ATCATCTAAATAACGTTTTAGCCCATTGGATCTTTATaaaggagacaggg
gtgtataagaataactgatttgaatatttacatatgttttcttataatta
gaTCAAAGTcgcaggaaaaagaaaaaactaagaTAATGACCTTTTGCTTT
GTACTTATATGGggcgaagaaaatatttactttaatgcaaatatttaaat
attcttttacaTAACATATTGAAAGACTTTAGGTAAATGTAAAGCAAAGA
CTTATGTGTTAGCATTCAAATTTCACGAAACTTAGAATAGAGATTTCGAA
CATGCGAAGGAGAGTCAGGGCCTggaagttctggtctgtaaagtatccaa
acggattaggtagtcagtattaagtattaagtagtaagtattaagtagta
ggtattaggcgttttagacctNATATAACGCATATAAGGGTTCGTTAATA
TGGTTTTTAATGGTCTGCACCAGGGGGCTCAGAGTGCGAAGCTCCTGAAA
GATTTTGATTATGTAGAAAATATTGGTTATTTCTGTTACAACAAAAAAAG
TTGGATTTTgctagaaataattttttctatttgaaTTTTAAGTTTCTGAA
ACTCACTCTTAGATCAAGAATTTTGGCCGGTATACAAACATAAAAAAGCT
ccgagaaaaatcttttttttttgcatttatttcAAGTTTGTTTGTGTTAG
TGGCAGCAGCAACAGAATTTCCAAATTTGCAAAGTTCATCAATAGCCAAC
TTCAAGTACTGAAAGATGAGGACATTGTCAATCTATGCACTGGTGATCGC
TATGTCATGTATAAAGTTGGTCCTGTTTTGATGGCTAATGTAAGCCCAGT
TTCTGTTGTTTTAAAGATTACCCCACCTGCACATACATTTGCATGACATC
ATTAGATTTCAATTACTTTTCTCATACAGGTTTTTATAGgcataatcgca
cgatgagttattttttctcatttggcgccctttcaaagagagcaattaat
cgttaattgcatcctgtagagagcaattaatcattaatcacactcttcat
cGACgggccaatgtttacaaaatagattttaatgttttttcttacatttt
tattATCGAACggtttaattgcattcgaaatttattttgtgagaaagaaa
atctgtaagcaacaatgaaagaaaaaaaataaagagaagagaaaaatata
aaacagttCAGTATATTTTTCTTCCNaaaagaaaaaaaataatgagaaga
gaaaaatataaaacagttCAGTCTATTTTTCTTCCTGACGGGGAAAAAGC
AGTGAAACCAATTGTGCGATtagtatggcgcgccaaagcggaaataaata
ctatctctttaaaacaatactatcttcgtttaaaacatactatcttttta
aaaaaatactattttcgattaaaacatactattttcgttcaaaaaatact
attttcgttcaaaaaatactattttcgttgaaaaaatgctatttccgttt
gaaaaaaactattctcgtttaaaacatactatcttcgtttaaaaacatac
tatcttttgtaatgatactatctttttttaaacaatactatctattTTAA
AACGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatactatgttt
taaacgaaaatagtattttttaagcaaaaaatagtatgttttaaaaaaga
tagtatgttttaaacgaagatagtatgtttacaacaaagatggtatgttt
taaacgaagatagtatttttacaacaaagatagtatgttttaaacgaaga
tagtattgttttaaaaagatagtatttatttccgctttggcgcgccatag
attagctcgtaatcacataataactcgtacaattcgaaaattgcactcgt
gatttttttgtttcgaattttcctcgtcctttcggactcggaaaattaat
aaaaaaaaaatcgctcgtgcaattattctcgaattccactcgttatcatg
tgattacatatactaattcttATAGATCCATCAAGGCTAAATTGTTTTGT
CATTGAAtggattaaaaaattgaaatctgcTAATACCAGAATCAATTAAC
TTACcagaattattattattttctctTTGCAGCATGGCATGGGCGTCCCC
TCAACAAGCATTTTGATGCACGAACTATTCAAACTATTACATTATGCTGG
TGCAGAGGATGTTGCTTTCTTTAGGATCGGAACATCTGGAGGATTAGGTA
TTCATGCCTGTTGTGTATATATTCTCCTTCTATTGGATAAATTATTTAAC
TCGTAGCAAGGAGATCTTTTTGAAGAAATAATATGATTTCAATGTTTGCT
ATTTGTTTTTGAACTCTTAGGTTTGACACCTGGAACAGTTGTTATCACAA
ATCGTGCCCTGAATGCATAtgctgagccaaaatttacacAGGTTTGTTGC
ATGTCATTATATTTGAAGACCAGATTCAAGTTTTCAATACAATTAATCAA
GGATGTGAAGATGTATATATAATACCTGGACGTAAAAGTGCTTtttgaag
ctgaaatttttaaatgtttcGAATGACGTGATGACTACTCTTATTCTTCA
GGTAGTGCTTGGGAAAACTGTGGAGCAAGATGCATCATTTTTGAACAGTA
TATCAGATGAGTTGATGTCGTTGACGCGTGATAGCGAAGAGAAAGTCTTG
TTCGAAGTGGTCATTGGAGATACCATGTGCTGTGATGACTTCTATGAAGG
TTTGTCACAATTATGGTGTGGGGGAGGGTTATGTGGGAAGATAGATGTTA
TCTgcagagaaatttcaaaaaaaatcgctTTTAGTTCTTTTAGTTTATTG
ATCTGCTTGAACCATTTATCAAGGCTCGATATCATTTGAAGGGCTATTAA
ATAGTATTCAGTGAATTTAATTGGACGCTACCAATTCTTGTCAAAATGTA
TATTTCTCCTTATTTATGACGTAGGCAAGGGAGATTAGAAACATTGTTTT
TTGTTATGTCTAGTATAAAGTGTTTGCAACAAGATAAAAAATCTGTCATA
AGATGATATCAATATGGTTTTAAAGGATCAGCCAATTATGATTTGATACA
TCAATTGCCTTATGTAACCTTTGGTTTAACTaaagttcaaaagttataaa
cGATTATCTTACCAAACTTGCTTAAAAGATAACGCGATGCGCACACTGTT
TTTCATAAAGTTCTCAGTGTTTGGGATCGCACCGTCAGTACACTACAGTA
TAATAAAGTTAGATTTTTATTAAAGTAGTTTACCGTTATGtatcttaacc
ctttaagtgccacggtaaTTTATTTCtaagctttttaaagaaaatcgctt
gTTCAAACTTTagaggcttatatctccggatctaaaaggaattagaagct
cgtttatagtccgTTGGATAGCTCAGAGTCACCTCTTTCTTTTAGGTGCC
TTCGAAAGCAGTCAGGTCCGCTgcgcttcgccctcctataaagcctatgt
ctgatatatacgacattggcacttaaagggttaagggaagaaaatttggc
gggtTTGGCCAAATTGGACTTTTCCCGCCATCCTTCGTCCGTCAAATTag
attccctctgaaaaaactttttccccCATCCGCCAAATAATTTCCCGCCA
AAATGTCTTCCCTTGAggtgataaaatttttctttactaaGAAGTTAATT
CCctgggaaaatattttcattccaCTTTGTTTCGAGTCACGTGATCCGTC
GTTTATCCATGCTTTCGTATAATGCTATTCCCCAACATAAAGGACAAGCG
AGGCTGGATGGAGCTTTTTGCAACTATACTGAAGAAGATAAGATGGGATA
CTTGAAGGAACTTCACCAAAAAGGTGTTCGTAATATCGAAATGGAATCCA
CCCTTTTCGCGTCGCTTTGCAATCGAGCTGGTATCAAAGCAAGTGTTGTT
TGTGTGGCCTTGTTGGATCGGTTGCTAGGTGACCAAGTAAACATCACCAA
GGAGATGAAAACAGAGTTCGAACAACGCCCTTGGTGGGTAGTTTTGAAGT
ATATTAAAAAACACATCTCAAAGTAAATGTGTACAACGTTAATATTGACT
TACAGtatcaaattaggtatttttaaagtattttgcAGTTTCCGAATGGC
ATTTGAATTTTTAtacgtttttataagcattcaGTATCCTAGCGCTTTCA
ACAAAGGTATACGATGGGGAGATAGGAATGAAGAGAATTCTCATTGCAAA
GATTCTATTATAATACTGCATTTAAGAGAATTAGGCCAAAATTGGAAAGC
CATAAGCCTTTTTATTAATGTCCAAGTCTGTCTTAAAATTCTTGAAGATT
ACTAAGCTAATTGTCTGGCTATAGTTTTAAAAAGGCAGGCTTTAGATTAA
GGCTCGTCTAGAAAAAAGCTGATACGGTTTACTTCCCAGCAGGAACCCCT
AATAATATATGACGAATTTTATTGCCCTTTTTGTTcagttattttgtatt
tatcgtTTTccgaaattgttttttttttttttttttactttgtattGTTT
ATTAAAGCATTTGGGAGATTCTTTATGAGTTGGTATCGTTCGCATATTTC
CCTTGATACGCTTTTTAATCCTCTTTTGATGATAAGGAATCATtccgttt
tgaatttttgttgatTATATTTTGTTTAGTTTTATTAATATTTGATAGAA
AAGGCTTTATTATCAGACTTTTGaagtcatttattttttaatgaaatctt
ATTTTGATGTTGTACTATTTATATTATTTGTGATCAGACAAACTGTCAAA
AGAATTAGTATTTAGTGAAATGTACATCAAGACTCGCTCTATCCCCGCCC
CCTTCTTACGTTTCTTGTCACTCCGAACTTTGTCCAGTAAGGTTGAAACA
GTCTATACCAATAGTTTTTTGAGAGGGGTTTTTTTGCTAAGGCCtaggaa
tatttttttaggactcaAAAACTGAGGTCACAAGCAAAACCCCTCATCCC
CTaaaatttgacgaaattt

Coding sequence (CDS) from alignment at scaffold_118:156671..163289+

>TCONS_00046893 ID=TCONS_00046893|Name=TCONS_00046893|organism=Clytia hemisphaerica|type=CDS|length=5274bp|location=Sequence derived from alignment at scaffold_118:156671..163289+ (Clytia hemisphaerica)
ATGAAACTATCAAACAAGCACCTTGAAGCTCTTGAAGCAGATCATTTCCA
CCATCTTGGTTTCGATACACAGAGTGTTGACGTGAGGAAAAAATTCAGTG
ATGTCAAgTTTGTTTGTGTTAGTGGCAGCAGCAACAGAATTTCCAAATTT
GCAAAGTTCATCAATAGCCAACTTCAAGTACTGAAAGATGAGGACATTGT
CAATCTATGCACTGGTGATCGCTATGTCATGTATAAAGTTGGTCCTGTTT
TGATGGCTAATCATGGCATGGGCGTCCCCTCAACAAGCATTTTGATGCAC
GAACTATTCAAACTATTACATTATGCTGGTGCAGAGGATGTTGCTTTCTT
TAGGATCGGAACATCTGGAGGATTAGGTTTGACACCTGGAACAGTTGTTA
TCACAAATCGTGCCCTGAATGCATAtgctgagccaaaatttacacAGGTA
GTGCTTGGGAAAACTGTGGAGCAAGATGCATCATTTTTGAACAGTATATC
AGATGAGTTGATGTCGTTGACGCGTGATAGCGAAGAGAAAGTCTTGTTCG
AAGTGGTCATTGGAGATACCATGTGCTGTGATGACTTCTATGAAGGACAA
GCGAGGCTGGATGGAGCTTTTTGCAACTATACTGAAGAAGATAAGATGGG
ATACTTGAAGGAACTTCACCAAAAAGGTGTTCGTAATATCGAAATGGAAT
CCACCCTTTTCGCGTCGCTTTGCAATCGAGCTGGTATCAAAGCAAGTGTT
GTTTGTGTGGCCTTGTTGGATCGGTTGCTAGGTGACCAAGTAAACATCAC
CAAGGAGATGAAAACAGAGTTCGAACAACGCCCTTGGTGGGTAGTTTTGA
AGTATATTAAAAAACACATCTCAAAGTAAATGAAACTATCAAACAAGCAC
CTTGAAGCTCTTGAAGCAGATCATTTCCACCATCTTGGTTTCGATACACA
GAGTGTTGACGTGAGGAAAAAATTCAGTGATGTCAAgTTTGTTTGTGTTA
GTGGCAGCAGCAACAGAATTTCCAAATTTGCAAAGTTCATCAATAGCCAA
CTTCAAGTACTGAAAGATGAGGACATTGTCAATCTATGCACTGGTGATCG
CTATGTCATGTATAAAGTTGGTCCTGTTTTGATGGCTAATCATGGCATGG
GCGTCCCCTCAACAAGCATTTTGATGCACGAACTATTCAAACTATTACAT
TATGCTGGTGCAGAGGATGTTGCTTTCTTTAGGATCGGAACATCTGGAGG
ATTAGGTTTGACACCTGGAACAGTTGTTATCACAAATCGTGCCCTGAATG
CATAtgctgagccaaaatttacacAGGTAGTGCTTGGGAAAACTGTGGAG
CAAGATGCATCATTTTTGAACAGTATATCAGATGAGTTGATGTCGTTGAC
GCGTGATAGCGAAGAGAAAGTCTTGTTCGAAGTGGTCATTGGAGATACCA
TGTGCTGTGATGACTTCTATGAAGGACAAGCGAGGCTGGATGGAGCTTTT
TGCAACTATACTGAAGAAGATAAGATGGGATACTTGAAGGAACTTCACCA
AAAAGGTGTTCGTAATATCGAAATGGAATCCACCCTTTTCGCGTCGCTTT
GCAATCGAGCTGGTATCAAAGCAAGTGTTGTTTGTGTGGCCTTGTTGGAT
CGGTTGCTAGGTGACCAAGTAAACATCACCAAGGAGATGAAAACAGAGTT
CGAACAACGCCCTTGGTGGGTAGTTTTGAAGTATATTAAAAAACACATCT
CAAAGTAAATGAAACTATCAAACAAGCACCTTGAAGCTCTTGAAGCAGAT
CATTTCCACCATCTTGGTTTCGATACACAGAGTGTTGACGTGAGGAAAAA
ATTCAGTGATGTCAAgTTTGTTTGTGTTAGTGGCAGCAGCAACAGAATTT
CCAAATTTGCAAAGTTCATCAATAGCCAACTTCAAGTACTGAAAGATGAG
GACATTGTCAATCTATGCACTGGTGATCGCTATGTCATGTATAAAGTTGG
TCCTGTTTTGATGGCTAATCATGGCATGGGCGTCCCCTCAACAAGCATTT
TGATGCACGAACTATTCAAACTATTACATTATGCTGGTGCAGAGGATGTT
GCTTTCTTTAGGATCGGAACATCTGGAGGATTAGGTTTGACACCTGGAAC
AGTTGTTATCACAAATCGTGCCCTGAATGCATAtgctgagccaaaattta
cacAGGTAGTGCTTGGGAAAACTGTGGAGCAAGATGCATCATTTTTGAAC
AGTATATCAGATGAGTTGATGTCGTTGACGCGTGATAGCGAAGAGAAAGT
CTTGTTCGAAGTGGTCATTGGAGATACCATGTGCTGTGATGACTTCTATG
AAGGACAAGCGAGGCTGGATGGAGCTTTTTGCAACTATACTGAAGAAGAT
AAGATGGGATACTTGAAGGAACTTCACCAAAAAGGTGTTCGTAATATCGA
AATGGAATCCACCCTTTTCGCGTCGCTTTGCAATCGAGCTGGTATCAAAG
CAAGTGTTGTTTGTGTGGCCTTGTTGGATCGGTTGCTAGGTGACCAAGTA
AACATCACCAAGGAGATGAAAACAGAGTTCGAACAACGCCCTTGGTGGGT
AGTTTTGAAGTATATTAAAAAACACATCTCAAAGTAAATGAAACTATCAA
ACAAGCACCTTGAAGCTCTTGAAGCAGATCATTTCCACCATCTTGGTTTC
GATACACAGAGTGTTGACGTGAGGAAAAAATTCAGTGATGTCAAgTTTGT
TTGTGTTAGTGGCAGCAGCAACAGAATTTCCAAATTTGCAAAGTTCATCA
ATAGCCAACTTCAAGTACTGAAAGATGAGGACATTGTCAATCTATGCACT
GGTGATCGCTATGTCATGTATAAAGTTGGTCCTGTTTTGATGGCTAATCA
TGGCATGGGCGTCCCCTCAACAAGCATTTTGATGCACGAACTATTCAAAC
TATTACATTATGCTGGTGCAGAGGATGTTGCTTTCTTTAGGATCGGAACA
TCTGGAGGATTAGGTTTGACACCTGGAACAGTTGTTATCACAAATCGTGC
CCTGAATGCATAtgctgagccaaaatttacacAGGTAGTGCTTGGGAAAA
CTGTGGAGCAAGATGCATCATTTTTGAACAGTATATCAGATGAGTTGATG
TCGTTGACGCGTGATAGCGAAGAGAAAGTCTTGTTCGAAGTGGTCATTGG
AGATACCATGTGCTGTGATGACTTCTATGAAGGACAAGCGAGGCTGGATG
GAGCTTTTTGCAACTATACTGAAGAAGATAAGATGGGATACTTGAAGGAA
CTTCACCAAAAAGGTGTTCGTAATATCGAAATGGAATCCACCCTTTTCGC
GTCGCTTTGCAATCGAGCTGGTATCAAAGCAAGTGTTGTTTGTGTGGCCT
TGTTGGATCGGTTGCTAGGTGACCAAGTAAACATCACCAAGGAGATGAAA
ACAGAGTTCGAACAACGCCCTTGGTGGGTAGTTTTGAAGTATATTAAAAA
ACACATCTCAAAGTAAATGAAACTATCAAACAAGCACCTTGAAGCTCTTG
AAGCAGATCATTTCCACCATCTTGGTTTCGATACACAGAGTGTTGACGTG
AGGAAAAAATTCAGTGATGTCAAgTTTGTTTGTGTTAGTGGCAGCAGCAA
CAGAATTTCCAAATTTGCAAAGTTCATCAATAGCCAACTTCAAGTACTGA
AAGATGAGGACATTGTCAATCTATGCACTGGTGATCGCTATGTCATGTAT
AAAGTTGGTCCTGTTTTGATGGCTAATCATGGCATGGGCGTCCCCTCAAC
AAGCATTTTGATGCACGAACTATTCAAACTATTACATTATGCTGGTGCAG
AGGATGTTGCTTTCTTTAGGATCGGAACATCTGGAGGATTAGGTTTGACA
CCTGGAACAGTTGTTATCACAAATCGTGCCCTGAATGCATAtgctgagcc
aaaatttacacAGGTAGTGCTTGGGAAAACTGTGGAGCAAGATGCATCAT
TTTTGAACAGTATATCAGATGAGTTGATGTCGTTGACGCGTGATAGCGAA
GAGAAAGTCTTGTTCGAAGTGGTCATTGGAGATACCATGTGCTGTGATGA
CTTCTATGAAGGACAAGCGAGGCTGGATGGAGCTTTTTGCAACTATACTG
AAGAAGATAAGATGGGATACTTGAAGGAACTTCACCAAAAAGGTGTTCGT
AATATCGAAATGGAATCCACCCTTTTCGCGTCGCTTTGCAATCGAGCTGG
TATCAAAGCAAGTGTTGTTTGTGTGGCCTTGTTGGATCGGTTGCTAGGTG
ACCAAGTAAACATCACCAAGGAGATGAAAACAGAGTTCGAACAACGCCCT
TGGTGGGTAGTTTTGAAGTATATTAAAAAACACATCTCAAAGTAAATGAA
ACTATCAAACAAGCACCTTGAAGCTCTTGAAGCAGATCATTTCCACCATC
TTGGTTTCGATACACAGAGTGTTGACGTGAGGAAAAAATTCAGTGATGTC
AAgTTTGTTTGTGTTAGTGGCAGCAGCAACAGAATTTCCAAATTTGCAAA
GTTCATCAATAGCCAACTTCAAGTACTGAAAGATGAGGACATTGTCAATC
TATGCACTGGTGATCGCTATGTCATGTATAAAGTTGGTCCTGTTTTGATG
GCTAATCATGGCATGGGCGTCCCCTCAACAAGCATTTTGATGCACGAACT
ATTCAAACTATTACATTATGCTGGTGCAGAGGATGTTGCTTTCTTTAGGA
TCGGAACATCTGGAGGATTAGGTTTGACACCTGGAACAGTTGTTATCACA
AATCGTGCCCTGAATGCATAtgctgagccaaaatttacacAGGTAGTGCT
TGGGAAAACTGTGGAGCAAGATGCATCATTTTTGAACAGTATATCAGATG
AGTTGATGTCGTTGACGCGTGATAGCGAAGAGAAAGTCTTGTTCGAAGTG
GTCATTGGAGATACCATGTGCTGTGATGACTTCTATGAAGGACAAGCGAG
GCTGGATGGAGCTTTTTGCAACTATACTGAAGAAGATAAGATGGGATACT
TGAAGGAACTTCACCAAAAAGGTGTTCGTAATATCGAAATGGAATCCACC
CTTTTCGCGTCGCTTTGCAATCGAGCTGGTATCAAAGCAAGTGTTGTTTG
TGTGGCCTTGTTGGATCGGTTGCTAGGTGACCAAGTAAACATCACCAAGG
AGATGAAAACAGAGTTCGAACAACGCCCTTGGTGGGTAGTTTTGAAGTAT
ATTAAAAAACACATCTCAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029920XLOC_029920Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046893-proteinTCONS_00046893-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046893-exon-scaffold_118-1491911889:156671..157025TCONS_00046893-exon-scaffold_118-1491911889:156671..157025Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1510915933:156671..157025TCONS_00046893-exon-scaffold_118-1510915933:156671..157025Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1575043694:156671..157025TCONS_00046893-exon-scaffold_118-1575043694:156671..157025Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1491911889:158407..158559TCONS_00046893-exon-scaffold_118-1491911889:158407..158559Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1510915933:158407..158559TCONS_00046893-exon-scaffold_118-1510915933:158407..158559Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1575043694:158407..158559TCONS_00046893-exon-scaffold_118-1575043694:158407..158559Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1491911889:160403..160517TCONS_00046893-exon-scaffold_118-1491911889:160403..160517Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1510915933:160403..160517TCONS_00046893-exon-scaffold_118-1510915933:160403..160517Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1575043694:160403..160517TCONS_00046893-exon-scaffold_118-1575043694:160403..160517Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1491911889:160641..160711TCONS_00046893-exon-scaffold_118-1491911889:160641..160711Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1510915933:160641..160711TCONS_00046893-exon-scaffold_118-1510915933:160641..160711Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1575043694:160641..160711TCONS_00046893-exon-scaffold_118-1575043694:160641..160711Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1491911889:160872..161019TCONS_00046893-exon-scaffold_118-1491911889:160872..161019Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1510915933:160872..161019TCONS_00046893-exon-scaffold_118-1510915933:160872..161019Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1575043694:160872..161019TCONS_00046893-exon-scaffold_118-1575043694:160872..161019Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1491911889:162063..163289TCONS_00046893-exon-scaffold_118-1491911889:162063..163289Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1510915933:162063..163289TCONS_00046893-exon-scaffold_118-1510915933:162063..163289Clytia hemisphaericaexon
TCONS_00046893-exon-scaffold_118-1575043694:162063..163289TCONS_00046893-exon-scaffold_118-1575043694:162063..163289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:156671..163289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0122	13.8884	3.48587	1.57345	7.49505	4.80531	7.63792	8.21943	10.2691	14.295	9.56638	6.12349	12.6063	9.11646	15.1073	15.6179	28.9257	27.1731	57.5031	81.6037	11.9334	12.2728	24.9252	24.5509	9.11417	9.85313	46.6202	26.9574	25.1546	18.9264
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000845Nucleoside_phosphorylase_d
IPR010059Uridine_phosphorylase_euk
Vocabulary: Biological Process
TermDefinition
GO:0009116nucleoside metabolic process
GO:0009166nucleotide catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004850uridine phosphorylase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009116 nucleoside metabolic process
biological_process GO:0009166 nucleotide catabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004850 uridine phosphorylase activity
Blast
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BLAST of TCONS_00046893 vs. Swiss-Prot (Human)
Match: UPP2 (Uridine phosphorylase 2 OS=Homo sapiens GN=UPP2 PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 6.634e-76
Identity = 140/296 (47.30%), Postives = 202/296 (68.24%), Query Frame = 2 
Query:  239 FVKMKLSNKHLEALEADHFHHLGFDTQSVDVRKKFSDVKFVCVSGSSNRISKFAKFINSQLQVLK-DEDIVNLCTG-DRYVMYKVGPVLMANHGMGVPSTSILMHELFKLLHYAGAEDVAFFRXXXXXXXXXXXXXXXXXNRALNAYAEPKFTQVVLGKTVEQDASFLNSISDELMSLTRDSEEKVLFEVVIGDTMCCDDFYEGQARLDGAFCNYTEEDKMGYLKELHQKGVRNIEMESTLFASLCNRAGIKASVVCVALLDRLLGDQVNITKEMKTEFEQRPWWVVLKYIKKHIS 1120
            FV +K  N +L+ ++ D  +HL   T++ ++   F DVKFVCV GS NR+  FA F++ +L   + +EDI ++C G DRY MYK GPVL  +HGMG+PS SI++HEL KLLH+A   DV   RIGTSGG+G+ PGTVVIT+ A++++ +P+F QV+L   V +       +S+EL +    S+E   F  ++G TMC  DFYEGQ RLDGA C+++ E K+ YLK   + GVRNIEMEST+FA++C   G+KA+VVCV LLDRL  DQ+N+  ++  E++QRP  ++  +I++ + 
Sbjct:   24 FVHVK--NPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELGFEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTIIRIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELFNC---SKEIPNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQLLISNFIRRRLG 314
The following BLAST results are available for this feature:
BLAST of TCONS_00046893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UPP26.634e-7647.30Uridine phosphorylase 2 OS=Homo sapiens GN=UPP2 PE... [more]
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