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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046957 ID=TCONS_00046957|Name=TCONS_00046957|organism=Clytia hemisphaerica|type=transcript|length=1580bp
AAATTTGTTTTGGATCAAGATTGGAGAATATTCTACCCTGGAAACGTCGA
GTTATTTTCCTGTACCGTACAAAAGATTTGATGTTGTTACAAATTTGCTC
CagataaataaatttaaacCCTTTGCATATGAATTGGTTGTTTGAACTAA
AAGATTGTTTGTTTTTGGTATTAAAGATTCtcaaaaaatagtaaaatttt
caaactgttgtctaagaagtcaaaatttcaaaacagtaATACCGAAATCT
CAGATTCACAAGAAAACTACACCTGAAAACAATTACGTCCCCTCGGAAAG
GCACACATCAAAAATGAATAAAGACACTTATATGCGACTTCGATACTTCA
TCATAGTGACATGCCACACACCCCACGTGCTCGTGTTGCTACTACGGAAC
TGCGCCAACGTTGGTAACATATACAACATGGCGGAGGTGGAACTAGCTTT
CCTGAAATTATCATTATTCACTGGAATCGCTCTACTCGTAAAACTAACAG
CAACAacattcattttcttctttgctTGTCAACGCTCTGTGTGCTCTTTG
AAATTATTTCTGTTTCTATATATATTTGACCTCATATCAGGGATGGGAAT
TTGCATGGACTCGTTTTTCAGACGTGAACTTTGGAAACCTCACTTGACAG
AGGATATCCATAATGTATCTATCATAGAAATTGCTTATATTTCCTTAGTC
GGTATAATGGTTTTCGTTGATGGCTTCAATCTTGTAATCACGTGGAAAGC
TTTGCAAAGTGGACATTTTAGACGAAGATCTATCATGTCTAAAGAATTTA
AATCTTACCTGAAACATTCGTCAAACCACGAGCTACGCATTAATCGATCA
ACGGGCGTTAGTCGTCAGGTGAGCCGCCAAAATACAAAAGACGAAATTAA
ATTGATACCATAATTTATTGAGATAGCTTGGATTATGATATTTCTTGTGA
TGCAAAACACATGTATAATGCAACCATGTTGAATATATTTGGTTGGCTGA
CACTTTGTTGActctactttttttttaaagcgcATTCTGCTTCCACCAGC
CATTTTACTGAGTTTGATCAGTTCGATGATATATGATATGATGACACAGT
TTTAGGATTTAGTGTGTATAACCCTGCGTAAGTCACCATGGAAACAAGTC
TAGTGACCCTCTCTTCATCCACGGTGCATTATGGAATCTTTGTGCATGAC
ACTTTTTATAAATTTCCCTAtagtaggaaaaaaagtttacagTATTTTTC
AAACGATCTttaattttaagccaaaattttatatttatgaTTGATTTCAT
GCACAATCTCGAGATCGATCAAATTAAGGTTTCGAGTAAGAATAATTAAA
TGCTTACTCTCTGCCTCCTGGAGTTATAAAGTTCAATGCActgtaaattt
tgaaatttcaagatttATATTAGTTATAAAATTTATGTAAGGATTTATCG
ACGAAATTTTTAATTAGGAAAAAGATGTATGTATATAAAATATGTGACTA
AATATTTTAGTCTGTAAATATGTGTATTACCATATCTAGAATTTCGAATT
ATTTGAAGCTTAAAGGAcactaaaataata Run BLAST on NCBI protein sequence of TCONS_00046957-protein >TCONS_00046957-protein ID=TCONS_00046957-protein|Name=TCONS_00046957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MNKDTYMRLRYFIIVTCHTPHVLVLLLRNCANVGNIYNMAEVELAFLKLS
LFTGIALLVKLTATTFIFFFACQRSVCSLKLFLFLYIFDLISGMGICMDS
FFRRELWKPHLTEDIHNVSIIEIAYISLVGIMVFVDGFNLVITWKALQSG
HFRRRSIMSKEFKSYLKHSSNHELRINRSTGVSRQVSRQNTKDEIKLIP Run BLAST on NCBI transcript from alignment at scaffold_118:326972..328551 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046957 ID=TCONS_00046957|Name=TCONS_00046957|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at scaffold_118:326972..328551 (Clytia hemisphaerica)
tattattttagtgTCCTTTAAGCTTCAAATAATTCGAAATTCTAGATATG
GTAATACACATATTTACAGACTAAAATATTTAGTCACATATTTTATATAC
ATACATCTTTTTCCTAATTAAAAATTTCGTCGATAAATCCTTACATAAAT
TTTATAACTAATATaaatcttgaaatttcaaaatttacagTGCATTGAAC
TTTATAACTCCAGGAGGCAGAGAGTAAGCATTTAATTATTCTTACTCGAA
ACCTTAATTTGATCGATCTCGAGATTGTGCATGAAATCAAtcataaatat
aaaattttggcttaaaattaaAGATCGTTTGAAAAATActgtaaactttt
tttcctactaTAGGGAAATTTATAAAAAGTGTCATGCACAAAGATTCCAT
AATGCACCGTGGATGAAGAGAGGGTCACTAGACTTGTTTCCATGGTGACT
TACGCAGGGTTATACACACTAAATCCTAAAACTGTGTCATCATATCATAT
ATCATCGAACTGATCAAACTCAGTAAAATGGCTGGTGGAAGCAGAATgcg
ctttaaaaaaaaagtagagTCAACAAAGTGTCAGCCAACCAAATATATTC
AACATGGTTGCATTATACATGTGTTTTGCATCACAAGAAATATCATAATC
CAAGCTATCTCAATAAATTATGGTATCAATTTAATTTCGTCTTTTGTATT
TTGGCGGCTCACCTGACGACTAACGCCCGTTGATCGATTAATGCGTAGCT
CGTGGTTTGACGAATGTTTCAGGTAAGATTTAAATTCTTTAGACATGATA
GATCTTCGTCTAAAATGTCCACTTTGCAAAGCTTTCCACGTGATTACAAG
ATTGAAGCCATCAACGAAAACCATTATACCGACTAAGGAAATATAAGCAA
TTTCTATGATAGATACATTATGGATATCCTCTGTCAAGTGAGGTTTCCAA
AGTTCACGTCTGAAAAACGAGTCCATGCAAATTCCCATCCCTGATATGAG
GTCAAATATATATAGAAACAGAAATAATTTCAAAGAGCACACAGAGCGTT
GACAagcaaagaagaaaatgaatgtTGTTGCTGTTAGTTTTACGAGTAGA
GCGATTCCAGTGAATAATGATAATTTCAGGAAAGCTAGTTCCACCTCCGC
CATGTTGTATATGTTACCAACGTTGGCGCAGTTCCGTAGTAGCAACACGA
GCACGTGGGGTGTGTGGCATGTCACTATGATGAAGTATCGAAGTCGCATA
TAAGTGTCTTTATTCATTTTTGATGTGTGCCTTTCCGAGGGGACGTAATT
GTTTTCAGGTGTAGTTTTCTTGTGAATCTGAGATTTCGGTATtactgttt
tgaaattttgacttcttagacaacagtttgaaaattttactattttttga
GAATCTTTAATACCAAAAACAAACAATCTTTTAGTTCAAACAACCAATTC
ATATGCAAAGGgtttaaatttatttatctGGAGCAAATTTGTAACAACAT
CAAATCTTTTGTACGGTACAGGAAAATAACTCGACGTTTCCAGGGTAGAA
TATTCTCCAATCTTGATCCAAAACAAATTT Coding sequence (CDS) from alignment at scaffold_118:326972..328551 >TCONS_00046957 ID=TCONS_00046957|Name=TCONS_00046957|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_118:326972..328551 (Clytia hemisphaerica)
TTATGGTATCAATTTAATTTCGTCTTTTGTATTTTGGCGGCTCACCTGAC
GACTAACGCCCGTTGATCGATTAATGCGTAGCTCGTGGTTTGACGAATGT
TTCAGGTAAGATTTAAATTCTTTAGACATGATAGATCTTCGTCTAAAATG
TCCACTTTGCAAAGCTTTCCACGTGATTACAAGATTGAAGCCATCAACGA
AAACCATTATACCGACTAAGGAAATATAAGCAATTTCTATGATAGATACA
TTATGGATATCCTCTGTCAAGTGAGGTTTCCAAAGTTCACGTCTGAAAAA
CGAGTCCATGCAAATTCCCATCCCTGATATGAGGTCAAATATATATAGAA
ACAGAAATAATTTCAAAGAGCACACAGAGCGTTGACAagcaaagaagaaa
atgaatgtTGTTGCTGTTAGTTTTACGAGTAGAGCGATTCCAGTGAATAA
TGATAATTTCAGGAAAGCTAGTTCCACCTCCGCCATGTTGTATATGTTAC
CAACGTTGGCGCAGTTCCGTAGTAGCAACACGAGCACGTGGGGTGTGTGG
CATGTCACTATGATGAAGTATCGAAGTCGCATATAAGTGTCTTTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046957-exon-scaffold_118-1491911889:326972..328551 | TCONS_00046957-exon-scaffold_118-1491911889:326972..328551 | Clytia hemisphaerica | exon |
| TCONS_00046957-exon-scaffold_118-1510915933:326972..328551 | TCONS_00046957-exon-scaffold_118-1510915933:326972..328551 | Clytia hemisphaerica | exon |
| TCONS_00046957-exon-scaffold_118-1575043694:326972..328551 | TCONS_00046957-exon-scaffold_118-1575043694:326972..328551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_118 | supercontig | scaffold_118:326972..328551 . |
Blast
The following BLAST results are available for this feature:
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