TCONS_00046958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046958
Unique NameTCONS_00046958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046958 ID=TCONS_00046958|Name=TCONS_00046958|organism=Clytia hemisphaerica|type=transcript|length=430bp
CAAATATCCCATCAGATACTACTCagtgagagtatggtatttatgATCTA
ttagtttgaatttgtttatatgcatttggtttgaattttgtgccaaaaaa
gccgttggATAAGGTAGCCGATCAGATTCGTGCATTTTTAATCAAAGCAA
TAAAGCAATAGTGCAATAATATCAagtgatttcaacaatttttcaacAGT
CGATAGAATTCTGCGCCAGGATCCTGTATCTTCATTAATACTTTACTCTG
CCTGCTACTGTCTTTCCTCTGTTGTTTTTTTAGGTATAGCGTACACACAT
CAAATTCTTTTTATATAGACAGtttgctttttggacctacctaaggtagt
cctttaaattaacccttgtccgttcgttcgttcgttcgttcgtccgttcg
ttcgttcgtctgttgccagcttttctcggg
Run BLAST on NCBI

transcript from alignment at scaffold_118:423102..423531

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046958 ID=TCONS_00046958|Name=TCONS_00046958|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_118:423102..423531 (Clytia hemisphaerica)
cccgagaaaagctggcaacagacgaacgaacgaacggacgaacgaacgaa
cgaacgaacggacaagggttaatttaaaggactaccttaggtaggtccaa
aaagcaaaCTGTCTATATAAAAAGAATTTGATGTGTGTACGCTATACCTA
AAAAAACAACAGAGGAAAGACAGTAGCAGGCAGAGTAAAGTATTAATGAA
GATACAGGATCCTGGCGCAGAATTCTATCGACTgttgaaaaattgttgaa
atcactTGATATTATTGCACTATTGCTTTATTGCTTTGATTAAAAATGCA
CGAATCTGATCGGCTACCTTATccaacggcttttttggcacaaaattcaa
accaaatgcatataaacaaattcaaactaaTAGATcataaataccatact
ctcactGAGTAGTATCTGATGGGATATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029960XLOC_029960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046958-exon-scaffold_118-1491911889:423102..423531TCONS_00046958-exon-scaffold_118-1491911889:423102..423531Clytia hemisphaericaexon
TCONS_00046958-exon-scaffold_118-1510915933:423102..423531TCONS_00046958-exon-scaffold_118-1510915933:423102..423531Clytia hemisphaericaexon
TCONS_00046958-exon-scaffold_118-1575043694:423102..423531TCONS_00046958-exon-scaffold_118-1575043694:423102..423531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:423102..423531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487887	0.630551	0.740946	1.26631	0.998554	0.73045	2.1941	1.19704	0.685455	1.19436	0.834723	1.97907	1.23903	1.46116	0.466857	1.00212	0.24667	0.253582	0	0.727432	1.83608	0.988835	0.187464	0.168332	2.30488	2.44005	1.87351	0.765821	0.36665	1.1233
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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