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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046976 ID=TCONS_00046976|Name=TCONS_00046976|organism=Clytia hemisphaerica|type=transcript|length=1323bp
CCTACCCTTTGTCAAATATtgtatgaatttcttttttttctttattcagt
tGCAGTATAACGTAAACGTCAACGTCGTTTTTTGAATCAAAACATTAAGG
TAAATACAAACTTCTTGTGACATTAACCTTTGTTGCTTGTTGCTGACCCT
AACAGTTCAATTTCTTGCACTTCAAATTTGAGATCGTTTTCAAACGTTGT
TTGCTGTTGGTTGCGTGAGTTGGTGAGTTTCTGCTGTTTCATTTAGTGTT
CTGTTCCGTAGGCttatgtttggttttgtttgaCCTCAggttattgaaat
tattcttcTCGTTCCTATTTGGTATTCTTCTGTTTTACATAGGTAAAGTA
AAATAAAGATTtcagttttaaaggtttttcattcaatttcgTACAGTTTA
TGGCCCAAATTGTAGGTGGCCCACAGCTCGGTTTCTTGCAGGCTTTCAGT
TCTTTTACAGCCTTAGATATTTTCGTTTCTAATTTCATCTTTTACTCTCA
GTGAGTCTTATTTTCTCTCACTaggatcaattttttttcatttttttttt
agttttattttttcatttagttTTGTTTCGATTATTGACATATTCTTTCC
CCTACCCTTTGTCAAATATtgtatgaatttcttttttttctttattcagt
tGCAGTATAACGTAAACGTCAACGTCGTTTTTTGAATCAAAACATTAAGG
TAAATACAAACTTCTTGTGACATTAACCTTTGTTGCTTGTTGCTGACCCT
AACAGTTCAATTTCGTGCACTTCAAATTTGAGATCGTTTTCAAACGTTGT
TTGCTGTTGGTTGCGTGAGTTGGTGAGTTTCTGCTGTTTCATTTGTTCTG
TTCCGTAGGCttatgtttggttttgtttgaCCTCAggttattgaaattat
tcttcTCGTTCCTATTTGGTATTCTTCTGTTTTACATAGGTAAAGTAAAA
TAAAGATTtcagttttaaaggtttttcattcaatttcgTACAGTTTATGG
CCCAAATTGTAGGTGGCCCACAGCTCGGTTTCTTGCAGGCTGTCAGTTCT
TTTACAGCCTTAGATATTTTCGTTTCTAATTTCATCTTTTTCTCTCAGTG
AGTCTTATTTTCTCTCACTaggatcaattttttttcattttttttttagt
tttattttttcatttagttTTGTTTCGATTATTGACATATTCTTTCCCCT
ACCCTTTGTCAAATATtgtatgaatttcttttttttctttattcagttGC
AGTATAACGTAAACGTCAACGTCGTTTTTTGAATCAAAACATTAAGCAAA
CTAACGACGATCAAGAAGTTGAA Run BLAST on NCBI transcript from alignment at scaffold_119:53998..56367- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046976 ID=TCONS_00046976|Name=TCONS_00046976|organism=Clytia hemisphaerica|type=transcript|length=2370bp|location=Sequence derived from alignment at scaffold_119:53998..56367- (Clytia hemisphaerica)
CCTACCCTTTGTCAAATATTGTATGAATTTCTTTTTTTTCTTTATTCAGT
TGCAGTATAACGTAAACGTCAACGTCGTTTTTTGAATCAAAACATTAAGG
TAAATACAAACTTCTTGTGACATTAACCTTTGTTGCTTGTTGCTGACCCT
AACAGTTCAATTTCTTGCACTTCAAATTTGAGATCGTTTTCAAACGTTGT
TTGCTGTTGGTTGCGTGAGTTGGTGAGTTTCTGCTGTTTCATTTAGTGTT
CTGTTCCGTAGGCTTATGTTTGGTTTTGTTTGACCTCAGGTTATTGAAAT
TATTCTTCTCGTTCCTATTTGGTATTCTTCTGTTTTACATAGGTAAAGTA
AAATAAAGATTTCAGTTTTAAAGGTTTTTCATTCAATTTCGTACAGTTTA
TGGCCCAAATTGTAGGTGGCCCACAGCTCGGTTTCTTGCAGGCTTTCAGT
TCTTTTACAGCCTTAGATATTTTCGTTTCTAATTTCATCTTTTACTCTCA
GTGAGTCTTATTTTCTCTCACTAGGATCAATTTTTTTTCATTTTTTTTTT
AGTTTTATTTTTTCATTTAGTTTTGTTTCGATTATTGACATATTCTTTCC
CCTACCCTTTGTCAAATATTGTATGAATTTCTTTTTTTTCTTTATTCAGT
TGCAGTATAACGTAAACGTCAACGTCGTTTTTTGAATCAAAACATTAAGG
TAAATACAAACTTCTTGTGACATTAACCTTTGTTGCTTGTTGCTGACCCT
AACAGTTCAATTTCGTGCACTTCAAATTTGAGATCGTTTTCAAACGTTGT
TTGCTGTTGGTTGCGTGAGTTGGTGAGTTTCTGCTGTTTCATTTGTTCTG
TTCCGTAGGCTTATGTTTGGTTTTGTTTGACCTCAGGTTATTGAAATTAT
TCTTCTCGTTCCTATTTGGTATTCTTCTGTTTTACATAGGTAAAGTAAAA
TAAAGATTTCAGTTTTAAAGGTTTTTCATTCAATTTCGTACAGTTTATGG
CCCAAATTGTAGGTGGCCCACAGCTCGGTTTCTTGCAGGCTGTCAGTTCT
TTTACAGCCTTAGATATTTTCGTTTCTAATTTCATCTTTTTCTCTCAGTG
AGTCTTATTTTCTCTCACTAGGATCAATTTTTTTTCATTTTTTTTTTAGT
TTTATTTTTTCATTTAGTTTTGTTTCGATTATTGACATATTCTTTCCCCT
ACCCTTTGTCAAATATTGTATGAATTTCTTTTTTTTCTTTATTCAGTTGC
AGTATAACGTAAACGTCAACGTCGTTTTTTGAATCAAAACATTAAGGTAA
ATACAAACTTCTTGTGACATTAACCTTTGTTGCTTGTTGCTGACCCTAAC
AGTTCAATTTCTTGCACTTCAAATTTGAGATCGTTTTCAAACGTTGTTTG
CTGTTGGTTGCGTGAGTTGGTGAGTTTCTGCTGTTTCATTTAGTGTTCTG
TTCCGTAGGCTTATGTTTGGTTTTGTTTGACCTCAGGTTATTGAAATTAT
TCTTCTCGTTCCTATTTGGTATTCTTCTGTTTTACATAGGTAAAGTAAAA
TAAAGATTTCAGTTTTAAAGGTTTTTCATTCAATTTCGTACAGTTTATGG
CCCAAATTGTAGGTGGCCCACAGCTCGGTTTCTTGCAGGCTGTCAGTTCT
TTTACAGCCTTAGATATTTTCGTTTCTAATTTCATCTTTTACTCTCAGTG
AGTCTTATTTTCTCTCACTAGGATCAATTTTTTTTCTTTTTTTTTAGTTT
TATTTTTTCATTTAGTTTTGTTTGATTATTGACATATTCTATCCCGTAGG
GGATAGGTGGCCCACAGCTCGATTTCTTGCAGGCTTTCAGTTCTTTTACA
GCCTTAGATATTTTCGTTTCTAATTTCATCTTTTACTCTCAGTGAGTCAT
ATTTTCCCTCAATAAGATCAATTTTTTTTTCATTTTCTTTTAGTTTTATT
TTTTCATTTAGTTTTGTTTGATTATTGACATATTCTATCCCGTAGGGGAT
AGGTGGCCCACAGGTCGGTTTCTTGCAGGCTTTCAGCTCTTTTACAGCCT
TAGATATTTTCGTTTCTAATTTCATCTTTTACTCTCAGTGAGTCATATTT
TCCCTCAATAAGATCAATTTTTTTTTTCATTTTCTTTTAGTTTTATTTTT
TCATTTAGTTTTGTTTGATTATTGACATATTCTATCCCGTAGGGGATAGG
TGGCCCACAGGTCGGTTTCTTGCAGGCTTTCAGCTCTTTTACAGCCTTAG
ATATTTTCGTTTCTAATTTCATCTTTTACTCTCAGTGAGTCATATTTTCT
CTCATTAGGATCAATTTTTTTCTCATTTTCTTTTATTCCTCAGCAAACTA
ACGACGATCAAGAAGTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046976-exon-scaffold_119-1575043694:55072..56367 | TCONS_00046976-exon-scaffold_119-1575043694:55072..56367 | Clytia hemisphaerica | exon |
| TCONS_00046976-exon-scaffold_119-1575043694:53998..54024 | TCONS_00046976-exon-scaffold_119-1575043694:53998..54024 | Clytia hemisphaerica | exon |
| TCONS_00046976-exon-scaffold_119-1510915933:55072..56367 | TCONS_00046976-exon-scaffold_119-1510915933:55072..56367 | Clytia hemisphaerica | exon |
| TCONS_00046976-exon-scaffold_119-1510915933:53998..54024 | TCONS_00046976-exon-scaffold_119-1510915933:53998..54024 | Clytia hemisphaerica | exon |
| TCONS_00046976-exon-scaffold_119-1491911889:55072..56367 | TCONS_00046976-exon-scaffold_119-1491911889:55072..56367 | Clytia hemisphaerica | exon |
| TCONS_00046976-exon-scaffold_119-1491911889:53998..54024 | TCONS_00046976-exon-scaffold_119-1491911889:53998..54024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:53998..56367 - |
Blast
The following BLAST results are available for this feature:
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