TCONS_00046977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046977
Unique NameTCONS_00046977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046977 ID=TCONS_00046977|Name=TCONS_00046977|organism=Clytia hemisphaerica|type=transcript|length=3287bp
TGCacacaaagtaaaaaaaaaacccatttttagacacattggcccaaatt
tgcccaaaaaaattattatttgaaaattgggcttcagattttaaatatta
ccatttcaCATCAAAGtgttaaaaatcagaaaaaatatcaatccaatCGC
AAGAAATGCAAGAAATGATCtcttttccctaaaaatgacatatgggaatt
tccccaaataagaaaatccgatttttagcccaaatttgccccaaatttta
tttttcgaaaatcgggcctcgtcactttttgggaatcaccattttgcatc
actgtgcaaaaaatcgaaaaaaataatgagccgatcctgagaaaagcttg
taacagacgaacggaaaACGGTCAAATTGAAGGACGGCAGgtccaaaaag
tcaaagaagatCCTTGGAATTCTCACAACATTATTGATCTTAAACTTCTT
GTCTCTATAGAGATGCTGGCGACACAAGGGTGCAcgaactgaataaaaag
attCGCGCCAATGACGAGTAAGTCCCTGAAATTCTCACAACATATGGTCC
GACAGAGGCACGAAGAGAGAAGGTTTTCGGATCAGCTGCAAGAAAGATTT
TGCGAAaatgaagaccaaaaaaaatcaaagacgAGTGAGTCCCTGGAATT
CGCACAACATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAGAG
ACAAAGTTAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATGCT
AGAGACGAAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGAGA
TGCTAGAGACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAAAC
GAGATGCTAGAGACAAAGTTAAACGaactaaacaaaaaaacttCACACCA
AAAACGATTAAGTCCCTGAAATTCGCACAACATTGAACTTCTTGTCATTA
TAGAGATGCTAGCGACACGGGTGCATGAGATTAATAAAAAACTTCGCGCC
AAAAACGAGTAAGTCCCTGAAATTCTCACGACAAATGTCATTCAACAATT
ACTACAATACGGGTGTAGTTTTGCGGcttaaaaattgatttatgTGCTTC
TTTCCCAAACAATCAAAATATAGGACGGAAATTCAAAtcagatgaagaag
aaaatcaatgtTAAAGTCAGATTCTAAATATTTCAATGCGACCCTAATAA
ACCATATCAAAAGAGCTTCCGATGAAAACTCCGAAAAGACATCCCTCGTA
AACGTGAACTTGTGGCAAAGCTCTCCAAAGAAAAGGCTTTTGGTACAAGT
ATGATAGATGAACATGATCTTCATAGAAGGACTCTGTGCAAACATTCTAT
CACAAGACTTCACATAATGACGTTGTTAAGcttataaaatctttattaTT
AATCGGAAAAATTACGTTGCGGTTGGTTGGCCTAACcaacattttctgaa
aatggtcaaagacTTTGCATGTCCATTATTAGATTTGACTCAGACTCTTA
GTGAGAAAAACAATCGTTTATTAATTAACTTTTTAACTTCTTTATCTAGC
ATGAGGCTCTAAAATTTCAGCTTAGAGCAGACGTTGATGCAACTTGATCT
TCtacatttttttagttttctccATATAAACACTCTTGTTCTAAGTTCTA
AGATTTCACTTTCATTATTTTGACTGTTACTACGAAGGTGGAGCCAATGA
ATTTCTAATTATTACCATTTTACTTTAAATGGAAAATTTATTACAACGAG
AAATACTCAATCAAATCGATCAAaacttttattcaaaattctatttttta
gCCTGAAAACACAGCCCCAATCGTCGAGGAGGCGGAAAATGAAGAACTCA
GAGAGCAGATTGATCAAGCAATCATTGATCTTCAAATTGAGAATGATAAA
TAATACGAACAAGAAGAAGTAGGACAGGGGGGGGTaccaagtcagtgtac
tggaccatagggtacgggtactaacttgatttttggatttgttttccaaa
aaattagaccaccaccctactaactttttttcatggtcggggctttgaca
ccacccttttagtacactgtactaactttttttcacggtcggggctttga
caccacccttttagtacactgtactaactttttttcacggtcggggcttt
gacaccacccttttattacactgtactaactttttttcacagccggagct
ttgataccaccctttGAGTACACTGTACTGATGTTTTTCCACAACTAGAT
TTTTATTAccaccctttcagtacactgtaGTGACTTCTCCATGACCGGAT
ttttgataccacccttttagtacactgtattAGCTGTTTTTTCGATCAGA
TGATTTTAGAAACCACCCTTTATAGTGCACTGTTCTAATTTCTTTTTGGC
CAGATAAGTTTAATTGCCACCACttcaggtaagtgacctaccggatgtgc
ggcccttaagggtaggtttttggactttggaaagtgcactgtaagggttg
atttgtgagaaagtgggaaaaagtgcactgtaagggtgtaaaattttata
aaaaaattcgaaaaattacactataagggtcgattttcagccaaattttt
cctgcactgcaAGGGAccaattttagagacctgatttttgccCGAACGTG
TGCAGTCGTTTTCACCCCTCCCCCCGGTGATTTCActtatatacagattt
ttttcaattaacaaTCCAACAAGGTTactaaaaaacataaaacaatagag
cgggtttgtttttataaaacttgaAAGCTTCGATTCGAACGTTTACACAT
TTCAAATTCTTGTTGTTGCCATAATGAGATAgggccttaaagaaaacata
aacaaGATTggacttaaggccggtctccaatTGCGCATGCTGCAACTctg
aaacaaatccaatcaagtAAACAGGAAACATTGGGAGAAAATCAGTGTAC
AATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGTGACCAGCTTG
GACCAAATTAGGGCAAATATACATGGGAATTCACTGGGTTTGTGTTTGTA
CCACTGAAATTAGTACAATGTACTAACTTCTCAGTGTGTATCAATTCAga
acaccaccctttttagtacagtgtactaactttttcattgtatttttcac
agaggaccacccttttagtacactgtactaactttttcattgtatttttc
tcagaggaccacccttgtacactgtactaactcaatttaacctaaaaaat
gcacccaccagctatgggccagtacactgactcgATA
Run BLAST on NCBI

protein sequence of TCONS_00046977-protein

>TCONS_00046977-protein ID=TCONS_00046977-protein|Name=TCONS_00046977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MKTKKNQRRVSPWNSHNIIDLELLVIIEMLETKLNGLNKKLRAKNEMLET
KLNELNEKLRAKNEMLETKLNELNIKLRAKNEMLETKLNELNKKTSHQKR
LSP
Run BLAST on NCBI

transcript from alignment at scaffold_119:74254..77900-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046977 ID=TCONS_00046977|Name=TCONS_00046977|organism=Clytia hemisphaerica|type=transcript|length=3647bp|location=Sequence derived from alignment at scaffold_119:74254..77900- (Clytia hemisphaerica)
TGCACACAAAGTAAAAAAAAAACCCATTTTTAGACACATTGGCCCAAATT
TGCCCAAAAAAATTATTATTTGAAAATTGGGCTTCAGATTTTAAATATTA
CCATTTCACATCAAAGTGTTAAAAATCAGAAAAAATATCAATCCAATCGC
AAGAAATGCAAGAAATGATCTCTTTTCCCTAAAAATGACATATGGGAATT
TCCCCAAATAAGAAAATCCGATTTTTAGCCCAAATTTGCCCCAAATTTTA
TTTTTCGAAAATCGGGCCTCGTCACTTTTTGGGAATCACCATTTTGCATC
ACTGTGCAAAAAATCGAAAAAAATAATGAGCCGATCCTGAGAAAAGCTTG
TAACAGACGAACGGAAAACGGTCAAATTGAAGGACGGCAGGTCCAAAAAG
TCAAAGAAGATCCTTGGAATTCTCACAACATTATTGATCTTAAACTTCTT
GTCTCTATAGAGATGCTGGCGACACAAGGGTGCACGAACTGAATAAAAAG
ATTCGCGCCAATGACGAGTAAGTCCCTGAAATTCTCACAACATATGGTCC
GACAGAGGCACGAAGAGAGAAGGTTTTCGGATCAGCTGCAAGAAAGATTT
TGCGAAAATGAAGACCAAAAAAAATCAAAGACGAGTGAGTCCCTGGAATT
CGCACAACATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAGAG
ACAAAGTTAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATGCT
AGAGACGAAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGAGA
TGCTAGAGACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAAAC
GAGATGCTAGAGACAAAGTTAAACGAACTAAACAAAAAAACTTCACACCA
AAAACGATTAAGTCCCTGAAATTCGCACAACATTGAACTTCTTGTCATTA
TAGAGATGCTAGCGACACGGGTGCATGAGATTAATAAAAAACTTCGCGCC
AAAAACGAGTAAGTCCCTGAAATTCTCACGACAAATGTCATTCAACAATT
ACTACAATACGGGTGTAGTTTTGCGGCTTAAAAATTGATTTATGTGCTTC
TTTCCCAAACAATCAAAATATAGGACGGAAATTCAAATCAGATGAAGAAG
AAAATCAATGTTAAAGTCAGATTCTAAATATTTCAATGCGACCCTAATAA
ACCATATCAAAAGGTAACAGCTCGCTGGAAAGATGTTTCCGAGTGGATGA
ATTGAGCAGAATTTCCTGCTATAGAGATTTTTCTTAAAACAACTCTTTTA
GGATCAGGCGTATTGAAAGTGCTATCTAGCCTCATGTCAAGGACAATAAA
GATTCTATGGGAATGGTGTTTTTTATTTTCAGTGCACTGGAGGGTATGGA
CGAAGTGAAAGAAACGATAAGATTTGTTCTGAAAGTAGTAAATAGTAATT
TGGCTTTTAAAAGGGGGGTTGATATGATATGGATTGAATTGGAGAGCAGT
TTTTCTTGGGAAAAATTTTTCCAAAAGCAAGAAAAAAACAAATTTGTGAT
TTCAATTTAATATTGCCTTTTAGAGCTTCCGATGAAAACTCCGAAAAGAC
ATCCCTCGTAAACGTGAACTTGTGGCAAAGCTCTCCAAAGAAAAGGCTTT
TGGTACAAGTATGATAGATGAACATGATCTTCATAGAAGGACTCTGTGCA
AACATTCTATCACAAGACTTCACATAATGACGTTGTTAAGCTTATAAAAT
CTTTATTATTAATCGGAAAAATTACGTTGCGGTTGGTTGGCCTAACCAAC
ATTTTCTGAAAATGGTCAAAGACTTTGCATGTCCATTATTAGATTTGACT
CAGACTCTTAGTGAGAAAAACAATCGTTTATTAATTAACTTTTTAACTTC
TTTATCTAGCATGAGGCTCTAAAATTTCAGCTTAGAGCAGACGTTGATGC
AACTTGATCTTCTACATTTTTTTAGTTTTCTCCATATAAACACTCTTGTT
CTAAGTTCTAAGATTTCACTTTCATTATTTTGACTGTTACTACGAAGGTG
GAGCCAATGAATTTCTAATTATTACCATTTTACTTTAAATGGAAAATTTA
TTACAACGAGAAATACTCAATCAAATCGATCAAAACTTTTATTCAAAATT
CTATTTTTTAGCCTGAAAACACAGCCCCAATCGTCGAGGAGGCGGAAAAT
GAAGAACTCAGAGAGCAGATTGATCAAGCAATCATTGATCTTCAAATTGA
GAATGATAAATAATACGAACAAGAAGAAGTAGGACAGGGGGGGGTACCAA
GTCAGTGTACTGGACCATAGGGTACGGGTACTAACTTGATTTTTGGATTT
GTTTTCCAAAAAATTAGACCACCACCCTACTAACTTTTTTTCATGGTCGG
GGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGGTC
GGGGCTTTGACACCACCCTTTTAGTACACTGTACTAACTTTTTTTCACGG
TCGGGGCTTTGACACCACCCTTTTATTACACTGTACTAACTTTTTTTCAC
AGCCGGAGCTTTGATACCACCCTTTGAGTACACTGTACTGATGTTTTTCC
ACAACTAGATTTTTATTACCACCCTTTCAGTACACTGTAGTGACTTCTCC
ATGACCGGATTTTTGATACCACCCTTTTAGTACACTGTATTAGCTGTTTT
TTCGATCAGATGATTTTAGAAACCACCCTTTATAGTGCACTGTTCTAATT
TCTTTTTGGCCAGATAAGTTTAATTGCCACCACTTCAGGTAAGTGACCTA
CCGGATGTGCGGCCCTTAAGGGTAGGTTTTTGGACTTTGGAAAGTGCACT
GTAAGGGTTGATTTGTGAGAAAGTGGGAAAAAGTGCACTGTAAGGGTGTA
AAATTTTATAAAAAAATTCGAAAAATTACACTATAAGGGTCGATTTTCAG
CCAAATTTTTCCTGCACTGCAAGGGACCAATTTTAGAGACCTGATTTTTG
CCCGAACGTGTGCAGTCGTTTTCACCCCTCCCCCCGGTGATTTCACTTAT
ATACAGATTTTTTTCAATTAACAATCCAACAAGGTTACTAAAAAACATAA
AACAATAGAGCGGGTTTGTTTTTATAAAACTTGAAAGCTTCGATTCGAAC
GTTTACACATTTCAAATTCTTGTTGTTGCCATAATGAGATAGGGCCTTAA
AGAAAACATAAACAAGATTGGACTTAAGGCCGGTCTCCAATTGCGCATGC
TGCAACTCTGAAACAAATCCAATCAAGTAAACAGGAAACATTGGGAGAAA
ATCAGTGTACAATTTGTATAGCTTAACCAGCCTTGACTTGAAGGTCTCGT
GACCAGCTTGGACCAAATTAGGGCAAATATACATGGGAATTCACTGGGTT
TGTGTTTGTACCACTGAAATTAGTACAATGTACTAACTTCTCAGTGTGTA
TCAATTCAGAACACCACCCTTTTTAGTACAGTGTACTAACTTTTTCATTG
TATTTTTCACAGAGGACCACCCTTTTAGTACACTGTACTAACTTTTTCAT
TGTATTTTTCTCAGAGGACCACCCTTGTACACTGTACTAACTCAATTTAA
CCTAAAAAATGCACCCACCAGCTATGGGCCAGTACACTGACTCGATA

Coding sequence (CDS) from alignment at scaffold_119:74254..77900-

>TCONS_00046977 ID=TCONS_00046977|Name=TCONS_00046977|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_119:74254..77900- (Clytia hemisphaerica)
ATGAAGACCAAAAAAAATCAAAGACGAGTGAGTCCCTGGAATTCGCACAA
CATTATTGACCTTGAACTTCTTGTCATTATAGAGATGCTAGAGACAAAGT
TAAACGGACTAAACAAAAAACTTCGCGCCAAAAACGAGATGCTAGAGACG
AAGTTAAACGAACTAAACGAAAAACTTCGCGCCAAAAACGAGATGCTAGA
GACAAAGTTAAACGAACTAAACATAAAACTTCGCGCCAAAAACGAGATGC
TAGAGACAAAGTTAAACGAACTAAACAAAAAAACTTCACACCAAAAACGA
TTAAGTCCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029972XLOC_029972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046977-proteinTCONS_00046977-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046977-exon-scaffold_119-1575043694:76688..77900TCONS_00046977-exon-scaffold_119-1575043694:76688..77900Clytia hemisphaericaexon
TCONS_00046977-exon-scaffold_119-1575043694:74254..76327TCONS_00046977-exon-scaffold_119-1575043694:74254..76327Clytia hemisphaericaexon
TCONS_00046977-exon-scaffold_119-1510915933:76688..77900TCONS_00046977-exon-scaffold_119-1510915933:76688..77900Clytia hemisphaericaexon
TCONS_00046977-exon-scaffold_119-1510915933:74254..76327TCONS_00046977-exon-scaffold_119-1510915933:74254..76327Clytia hemisphaericaexon
TCONS_00046977-exon-scaffold_119-1491911889:76688..77900TCONS_00046977-exon-scaffold_119-1491911889:76688..77900Clytia hemisphaericaexon
TCONS_00046977-exon-scaffold_119-1491911889:74254..76327TCONS_00046977-exon-scaffold_119-1491911889:74254..76327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:74254..77900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.538763	0.829788	0.386315	1.49345	2.55964	2.20221	2.75801	3.72668	1.31403	1.95397	1.41417	1.05719	1.25514	1.18782	0.938092	0.996602	1.19756	1.43983	0.7224	0.706027	1.35695	2.11053	0.852944	0.614314	2.34625	2.62178	2.07384	1.3019	1.85188	1.77131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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