TCONS_00046983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046983
Unique NameTCONS_00046983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046983 ID=TCONS_00046983|Name=TCONS_00046983|organism=Clytia hemisphaerica|type=transcript|length=1685bp
GGAAGGGGAAGACCCCTTTATACAAGTCGACAATGAAAGTTCTCCAACCA
CGCTTGAACCAAATTTTGGTAATGAAATAAAGAGCAATTCTGCATACTGG
ATGAATTTAAATAACAGTACACAATATTCGTCTGACAACTTTAATGATAA
ATTTTTCGGAGGAGAATTATTACAATCATGCGATGTTCCTAAGAAACAAC
CAGTGGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGATACCGGC
TCACACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCAGCCTAT
TTTCGGCGGAGattctCCTCATGAATTGTCACCAATGCAAGTAGTCTTCA
CCGAAAATGAAGATATACAATATTCGTCTGACACCTTTAATGATGAATTA
TTCGGAGGAGAATTATTACAATCATGCGATGTTCCTAAGAAACAACCAGT
GGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGATACCGGCTCAC
ACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCAGCCTATTTTC
GGCGGAGattctCCTCATGAATTGTCACCAATGCAAGTAGTCTTCACCGA
AAATGAAGAACTCCAATAGTAATAAATGGCCTGACTAGCATATCACAAAC
AGCTGCAACACCTGTTATGATGGTACCTTTAGGATTATACTGGTATCCTA
TGCAGCAAGTATGGCCACAAATCCCTCCACACCCTATTGCAAGTGTTAAC
CAAACCATTCCATTAACTTATCTTGATCAAAGTGGATTAAATCTCAGCTT
TTCCAATACTGGAGCTATTATGACTAATGGAGCACCAGCATGTATGGCGA
CATCTGCTGCAACACATTCGAACCCAAGGAAAAGAAAATGTACATTAAAT
GTTTCCACTCAGACAAATTGCGAGGATGAAACCGAGATAGACTTTTCTGT
TGAAGATTTAAGCTTTCGTCgtaaagaaaaacgaaaagtgAGAAACCGAA
AATCTGTAGATAGGTATCAAGAAGAACAAAAAATAcgagcaaaaaaaatc
gaacaGACTGCTCAAGATCTTCAGCGCCAAAACGAAAGGCTACATTCCCA
ATCGAGAACAATGGAATCCGAAAGACATGAGATGTATCAAAAACTTGAAG
ATGAATTTTACAGAATTATTTCTGATGACACATTTTCAAGGGATAAATCT
GAATTTTGTGAAGCAATGAAAAGactttttatttgtaaaaagtttGCAGA
GAACAATGGAATGGTTTATTCAATTGGCGCTTGTGAAAGACTTCTGGGAA
TGtacaaaattttcattgaaaataatctaaCTACAGATGAGCGATTAGAG
ATACAAAGACGTATTCAAATTATTTCGTCACCAAATAGTTAGCATTAGAT
TTATCTTAAATGTtcttcaatcatttttgtatatAGTTTTTGGAATTTAT
CACCTATAAATTCCGTGTCATAGACTTGTTGGACCCTCGTCCCACTAAAT
CACTTTGCCAAAATTTGGTCTCGGTGTGAAAAAACCTTTAATCTCAGCCC
AAAtaggaaattgactttgttttcatccaCATTAAAGTTCTTTGGTAAAT
AATTCCTTAGTTACTCCTAACTTTTGAGTAATTTTAGACACTCCAAACTT
CTTTTATATTAAATGGTATTTTTTTACCTAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00046983-protein

>TCONS_00046983-protein ID=TCONS_00046983-protein|Name=TCONS_00046983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MMVPLGLYWYPMQQVWPQIPPHPIASVNQTIPLTYLDQSGLNLSFSNTGA
IMTNGAPACMATSAATHSNPRKRKCTLNVSTQTNCEDETEIDFSVEDLSF
RRKEKRKVRNRKSVDRYQEEQKIRAKKIEQTAQDLQRQNERLHSQSRTME
SERHEMYQKLEDEFYRIISDDTFSRDKSEFCEAMKRLFICKKFAENNGMV
YSIGACERLLGMYKIFIENNLTTDERLEIQRRIQIISSPNS
Run BLAST on NCBI

transcript from alignment at scaffold_119:92450..97114-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046983 ID=TCONS_00046983|Name=TCONS_00046983|organism=Clytia hemisphaerica|type=transcript|length=4665bp|location=Sequence derived from alignment at scaffold_119:92450..97114- (Clytia hemisphaerica)
GGAAGGGGAAGACCCCTTTATACAAGTCGACAATGAAAGTTCTCCAACCA
CGCTTGAACCAAATTTTGGTAATGAAATAAAGAGCAATTCTGCATACTGG
ATGAATTTAAATAACAGTACACAATATTCGTCTGACAACTTTAATGATAA
ATTTTTCGGAGGAGGTATACATAACTTTTTGATCCTCGATTTTAATTTTC
CGTTCACAATTAAAATTTCAACTTCAAGTTTTAAATATCTAGTAGTTTTT
TCAATGTTTTTTTGTCGATACTATACCCTATTAGGAGCATATAATATTAA
AAATTTGCCCTACGAAGTGACACAATTCATTACCTCGATCGCTGGTCTTG
ATATTTTAATTTTTCCGATTCAACCAAGAAATTTTCAAGTAATTGTAATT
GTAGAGCTGAAAAATTCTACAACCCATTCTCTACTGATCCGGTAGAGGTT
TTTTTCTCCATCTAGTAATGGTGTAAACAACAGACTGAAACATTCCCATG
TTTTTTGTGGCAGGGGATTTGAAATTCAAGTTGTGAATGAAATAAATATT
TTTCAGTGAGGGTTTCGTTATTTGATTGTTTTCAGCGGGGACAAAAATTA
GAGTACAATTTTCCACTGGGGATGAGATTTTGGTCCAAGTGGGAGGGGTC
ATCCCACCGGGTCTGTAAGGAGGGGGCGTTAATTTCAAACATATTTATGC
TATATCGAATCATTTTCTAGAATTATTACAATCATGCGATGTTCCTAAGA
AACAACCAGTGGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGAT
ACCGGCTCACACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCA
GCCTATTTTCGGCGGAGGTACTCAAATTTACCTATTTGACAAGTTTATGT
TTTACATTTATGTCAAGCTATTCGAAAGCTTATTTCTGATTAAATCGAAA
ATTACAAGTTAAGGGCTCTGAACATAGTCGGAAAGTTGATTTTAATATTT
CAACATGAAAGTTATGCTTTAGGTTCTTAACACTTTTAACAAATAATTGC
CTTTATAAATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGAATCGG
AAAATATTAAAAATTCACTATGGTTAGAGCCCTTAAAGCCGATGGGACCA
TTCAAAAAGTACGTACGCTCGAGAGGGGGAAGGGGGGTACACTCCCAAAA
GCGTACAAGGGGGAGAAGGGGTCATTGAGCAGAAGTACGTTTGCGCTCGT
AATTTTTCCTAAACTGTCTTTTTTGAGAGAAAAACGCAATATTTTCAAAT
CAAAAAATTTTTTATGCGATTGTCATTTTTCATTTTTCCTTTGGTATTTT
TTTTCATCTTATAGATTCTTTTAATTTCTTGAGATTTTGTTATAAATACG
ATTGGATACCTACATGTTCTACTGTTACAATAGTTTCAAGTTTCGACTTT
GGTTAGGGGGGGGGTGTACTAAAAAGCGTGCGCACGCTGAAGGGGGGTAC
ACATAAAGCGTACGAAAGCGTACTTGCTTTTTGAATGATCCCAATCTATA
ATGAACCTTTCCGATGTTGAAAAAGCAATTTGAATTATTTAGGGGCCATT
CACATATCGATGTTTCCCCACGCCTAACGTCAAATTGACGCAAAGTGTAG
GGGGAGGGGGTCAGAGGCAGTGACGTTAAGAAAATCAATAAAAACATCGA
TTTTTGAGGCTGAAAGAAATAACTAGATAAATTATATAATTGCAGTGTTG
CACATCATGGTTTAAGTCAATCTTTTTTCTTTTTTAGATTCTCCTCATGA
ATTGTCACCAATGCAAGTAGTCTTCACCGAAAATGAAGATATACAATATT
CGTCTGACACCTTTAATGATGAATTATTCGGAGGAGGTATACATTACTTT
TTGATCCTCGATTTTAAGTTTCCGTTCACAATTAAAATTTCAACTTCACA
ATTTAAATATCTAGTTGTTTTTTTTAAGTTTTTTTTTTGTCGATTCTATA
CCTTATTAGGAGCATATAATATTAAAAATTTGCCCTGATCTAAGGGGTGC
CCTATGAAGTGACACAATTCATTACCTCGACCGCTTGTCTTGATATTTTA
ATTTTTCCGATTCAACCAAGAAATTTTCAAGTAATTGTAATTGTAGAGCT
GAAAAATTCTACAACCCATTCTCTACTGATCCGGTAGAGGTTTTTTTCTC
CATCTAGTAATGGTGTAAACAACAGACTGAAACATTCCCATGTTTTTTGT
GGCAGGGGATTTGAAATTCAAGTTGTGAATGAAATAAATATTTTTCAGTG
AGGGTTTCGTTATTTGATTGTTTTCAGCGGGGACAAAAATTAGAGTACAA
TTTTCCACTGGGGATGAGATTTTGGTCCAAGTGGGAGGGGTCATCCCACC
GGGTCTGTAAGGAGGGGGCGTTAATTTCAAACATATTTATGCTATATCGA
ATCATTTTCTAGAATTATTACAATCATGCGATGTTCCTAAGAAACAACCA
GTGGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGATACCGGCTC
ACACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCAGCCTATTT
TCGGCGGAGGTACTCAAATTTACCTATTTGACAAGTTTATGTTTTACATT
TATGTCAAGCTATTCGAAAGCTTATTTCTGATTAAATCGAAAATTACAAG
TTAAGGGCTCTGAACATAGTTGGAAAATTAATTTTAGTATTTCAACATGA
AAGTTATGCTTTAGGTTCTTAACACTTTTAACAAATAATTGCCTTTATAA
ATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGAATTGGCAAATATT
AAAAATTCACTATGGTTAGAGCCCTTAAAGCCAATGGGACCATTCAAAAA
GTACGTACGCTCGAGAGGGGGAAGGGGGGTACTCCTAAAAGCGTACGAAA
GCGTACAAGGGGGAGAAGGGGTCATTGAGGAGAAGTACGTTTACGCTCGT
AATTTTTCCTAAACTGTCTTTTTTGAGAGAAAAACGCAATATTTTCAAAT
CAAAAAATTTTTTATGCGATTGTCATTTTTCATTTTTCCTTTGGTATTTT
TTTTCATCTTATAGATTCTTTTAATTTCTTGAGATTTTGTTATAAATACG
ATTGGATACCTACATGTTCTACTGTTACAATAGTTTCAAGTTTCGACTTT
GGTTAGGGGGGGGGTGTACTAAAAAGCGTGCGCACGCTGAAGGGGGGTAC
ACATAAAGCGTACGAAAGCGTACTTGCTTTTTGAATGATCCCAATCTATA
ATGAACCTTTCCGATGTTGAAAAAGCAATTTGAATTATTTAGGGGCCATT
CACATATCGATGTTTCCCCACGCCTAACGTCAAATTGACGCAAAGTGTAG
GGGGAGGGGGTCAGAGGCAGTGACGTTAAGAAAATCAATAAAAACATCGA
TTTTTGAGGCTGAAAGAAATAACTAGATAAATTATATAATTGCAGTGTTG
CACATCATGGTTTAAGTCAATCTTTTTTCTTTTTTAGATTCTCCTCATGA
ATTGTCACCAATGCAAGTAGTCTTCACCGAAAATGAAGAACTCCAATAGT
AATAAATGGCCTGACTAGCATATCACAAACAGCTGCAACACCTGTTATGA
TGGTACCTTTAGGATTATACTGGTATCCTATGCAGCAAGTATGGCCACAA
ATCCCTCCACACCCTATTGCAAGTGTTAACCAAACCATTCCATTAACTTA
TCTTGATCAAAGTGGATTAAATCTCAGCTTTTCCAATACTGGAGCTATTA
TGACTAATGGAGCACCAGCATGTATGGCGACATCTGCTGCAACACATTCG
AACCCAAGGAAAAGAAAATGTACATTAAATGTTTCCACTCAGACAAATTG
CGAGGATGAAACCGAGATAGACTTTTCTGTTGAAGATTTAAGCTTTCGTC
GTAAAGAAAAACGAAAAGTGAGAAACCGAAAATCTGTAGATAGGTATCAA
GAAGAACAAAAAATACGAGCAAAAAAAATCGAACAGACTGCTCAAGATCT
TCAGCGCCAAAACGAAAGGCTACATTCCCAATCGAGAACAATGGAATCCG
AAAGACATGAGATGTATCAAAAACTTGAAGATGAATTTTACAGAATTATT
TCTGATGACACATTTTCAAGGGATAAATCTGAATTTTGTGAAGCAATGAA
AAGACTTTTTATTTGTAAAAAGTTTGCAGAGAACAATGGAATGGTTTATT
CAATTGGCGCTTGTGAAAGACTTCTGGGAATGTACAAAATTTTCATTGAA
AATAATCTAACTACAGATGAGCGATTAGAGATACAAAGACGTATTCAAAT
TATTTCGTCACCAAATAGTTAGCATTAGATTTATCTTAAATGTTCTTCAA
TCATTTTTGTATATAGTTTTTGGAATTTATCACCTATAAATTCCGTGTCA
TAGACTTGTTGGACCCTCGTCCCACTAAATCACTTTGCCAAAATTTGGTC
TCGGTGTGAAAAAACCTTTAATCTCAGCCCAAATAGGAAATTGACTTTGT
TTTCATCCACATTAAAGTTCTTTGGTAAATAATTCCTTAGTTACTCCTAA
CTTTTGAGTAATTTTAGACACTCCAAACTTCTTTTATATTAAATGGTATT
TTTTTACCTAAGAAC

Coding sequence (CDS) from alignment at scaffold_119:92450..97114-

>TCONS_00046983 ID=TCONS_00046983|Name=TCONS_00046983|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_119:92450..97114- (Clytia hemisphaerica)
ATGATGGTACCTTTAGGATTATACTGGTATCCTATGCAGCAAGTATGGCC
ACAAATCCCTCCACACCCTATTGCAAGTGTTAACCAAACCATTCCATTAA
CTTATCTTGATCAAAGTGGATTAAATCTCAGCTTTTCCAATACTGGAGCT
ATTATGACTAATGGAGCACCAGCATGTATGGCGACATCTGCTGCAACACA
TTCGAACCCAAGGAAAAGAAAATGTACATTAAATGTTTCCACTCAGACAA
ATTGCGAGGATGAAACCGAGATAGACTTTTCTGTTGAAGATTTAAGCTTT
CGTCGTAAAGAAAAACGAAAAGTGAGAAACCGAAAATCTGTAGATAGGTA
TCAAGAAGAACAAAAAATACGAGCAAAAAAAATCGAACAGACTGCTCAAG
ATCTTCAGCGCCAAAACGAAAGGCTACATTCCCAATCGAGAACAATGGAA
TCCGAAAGACATGAGATGTATCAAAAACTTGAAGATGAATTTTACAGAAT
TATTTCTGATGACACATTTTCAAGGGATAAATCTGAATTTTGTGAAGCAA
TGAAAAGACTTTTTATTTGTAAAAAGTTTGCAGAGAACAATGGAATGGTT
TATTCAATTGGCGCTTGTGAAAGACTTCTGGGAATGTACAAAATTTTCAT
TGAAAATAATCTAACTACAGATGAGCGATTAGAGATACAAAGACGTATTC
AAATTATTTCGTCACCAAATAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029973XLOC_029973Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046983-exon-scaffold_119-1575043694:96951..97114TCONS_00046983-exon-scaffold_119-1575043694:96951..97114Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1575043694:96248..96394TCONS_00046983-exon-scaffold_119-1575043694:96248..96394Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1575043694:95229..95327TCONS_00046983-exon-scaffold_119-1575043694:95229..95327Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1575043694:94506..94652TCONS_00046983-exon-scaffold_119-1575043694:94506..94652Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1575043694:92450..93577TCONS_00046983-exon-scaffold_119-1575043694:92450..93577Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1510915933:96951..97114TCONS_00046983-exon-scaffold_119-1510915933:96951..97114Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1510915933:96248..96394TCONS_00046983-exon-scaffold_119-1510915933:96248..96394Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1510915933:95229..95327TCONS_00046983-exon-scaffold_119-1510915933:95229..95327Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1510915933:94506..94652TCONS_00046983-exon-scaffold_119-1510915933:94506..94652Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1510915933:92450..93577TCONS_00046983-exon-scaffold_119-1510915933:92450..93577Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1491911889:96951..97114TCONS_00046983-exon-scaffold_119-1491911889:96951..97114Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1491911889:96248..96394TCONS_00046983-exon-scaffold_119-1491911889:96248..96394Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1491911889:95229..95327TCONS_00046983-exon-scaffold_119-1491911889:95229..95327Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1491911889:94506..94652TCONS_00046983-exon-scaffold_119-1491911889:94506..94652Clytia hemisphaericaexon
TCONS_00046983-exon-scaffold_119-1491911889:92450..93577TCONS_00046983-exon-scaffold_119-1491911889:92450..93577Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046983-proteinTCONS_00046983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:92450..97114 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.0996089	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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