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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046984 ID=TCONS_00046984|Name=TCONS_00046984|organism=Clytia hemisphaerica|type=transcript|length=1439bp
GGAAGGGGAAGACCCCTTTATACAAGTCGACAATGAAAGTTCTCCAACCA
CGCTTGAACCAAATTTTGGTAATGAAATAAAGAGCAATTCTGCATACTGG
ATGAATTTAAATAACAGTACACAATATTCGTCTGACAACTTTAATGATAA
ATTTTTCGGAGGAGAATTATTACAATCATGCGATGTTCCTAAGAAACAAC
CAGTGGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGATACCGGC
TCACACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCAGCCTAT
TTTCGGCGGAGattctCCTCATGAATTGTCACCAATGCAAGTAGTCTTCA
CCGAAAATGAAGAACTCCAATAGTAATAAATGGCCTGACTAGCATATCAC
AAACAGCTGCAACACCTGTTATGATGGTACCTTTAGGATTATACTGGTAT
CCTATGCAGCAAGTATGGCCACAAATCCCTCCACACCCTATTGCAAGTGT
TAACCAAACCATTCCATTAACTTATCTTGATCAAAGTGGATTAAATCTCA
GCTTTTCCAATACTGGAGCTATTATGACTAATGGAGCACCAGCATGTATG
GCGACATCTGCTGCAACACATTCGAACCCAAGGAAAAGAAAATGTACATT
AAATGTTTCCACTCAGACAAATTGCGAGGATGAAACCGAGATAGACTTTT
CTGTTGAAGATTTAAGCTTTCGTCgtaaagaaaaacgaaaagtgAGAAAC
CGAAAATCTGTAGATAGGTATCAAGAAGAACAAAAAATAcgagcaaaaaa
aatcgaacaGACTGCTCAAGATCTTCAGCGCCAAAACGAAAGGCTACATT
CCCAATCGAGAACAATGGAATCCGAAAGACATGAGATGTATCAAAAACTT
GAAGATGAATTTTACAGAATTATTTCTGATGACACATTTTCAAGGGATAA
ATCTGAATTTTGTGAAGCAATGAAAAGactttttatttgtaaaaagtttG
CAGAGAACAATGGAATGGTTTATTCAATTGGCGCTTGTGAAAGACTTCTG
GGAATGtacaaaattttcattgaaaataatctaaCTACAGATGAGCGATT
AGAGATACAAAGACGTATTCAAATTATTTCGTCACCAAATAGTTAGCATT
AGATTTATCTTAAATGTtcttcaatcatttttgtatatAGTTTTTGGAAT
TTATCACCTATAAATTCCGTGTCATAGACTTGTTGGACCCTCGTCCCACT
AAATCACTTTGCCAAAATTTGGTCTCGGTGTGAAAAAACCTTTAATCTCA
GCCCAAAtaggaaattgactttgttttcatccaCATTAAAGTTCTTTGGT
AAATAATTCCTTAGTTACTCCTAACTTTTGAGTAATTTTAGACACTCCAA
ACTTCTTTTATATTAAATGGTATTTTTTTACCTAAGAAC Run BLAST on NCBI transcript from alignment at scaffold_119:92450..97114- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046984 ID=TCONS_00046984|Name=TCONS_00046984|organism=Clytia hemisphaerica|type=transcript|length=4665bp|location=Sequence derived from alignment at scaffold_119:92450..97114- (Clytia hemisphaerica)
GGAAGGGGAAGACCCCTTTATACAAGTCGACAATGAAAGTTCTCCAACCA
CGCTTGAACCAAATTTTGGTAATGAAATAAAGAGCAATTCTGCATACTGG
ATGAATTTAAATAACAGTACACAATATTCGTCTGACAACTTTAATGATAA
ATTTTTCGGAGGAGGTATACATAACTTTTTGATCCTCGATTTTAATTTTC
CGTTCACAATTAAAATTTCAACTTCAAGTTTTAAATATCTAGTAGTTTTT
TCAATGTTTTTTTGTCGATACTATACCCTATTAGGAGCATATAATATTAA
AAATTTGCCCTACGAAGTGACACAATTCATTACCTCGATCGCTGGTCTTG
ATATTTTAATTTTTCCGATTCAACCAAGAAATTTTCAAGTAATTGTAATT
GTAGAGCTGAAAAATTCTACAACCCATTCTCTACTGATCCGGTAGAGGTT
TTTTTCTCCATCTAGTAATGGTGTAAACAACAGACTGAAACATTCCCATG
TTTTTTGTGGCAGGGGATTTGAAATTCAAGTTGTGAATGAAATAAATATT
TTTCAGTGAGGGTTTCGTTATTTGATTGTTTTCAGCGGGGACAAAAATTA
GAGTACAATTTTCCACTGGGGATGAGATTTTGGTCCAAGTGGGAGGGGTC
ATCCCACCGGGTCTGTAAGGAGGGGGCGTTAATTTCAAACATATTTATGC
TATATCGAATCATTTTCTAGAATTATTACAATCATGCGATGTTCCTAAGA
AACAACCAGTGGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGAT
ACCGGCTCACACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCA
GCCTATTTTCGGCGGAGGTACTCAAATTTACCTATTTGACAAGTTTATGT
TTTACATTTATGTCAAGCTATTCGAAAGCTTATTTCTGATTAAATCGAAA
ATTACAAGTTAAGGGCTCTGAACATAGTCGGAAAGTTGATTTTAATATTT
CAACATGAAAGTTATGCTTTAGGTTCTTAACACTTTTAACAAATAATTGC
CTTTATAAATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGAATCGG
AAAATATTAAAAATTCACTATGGTTAGAGCCCTTAAAGCCGATGGGACCA
TTCAAAAAGTACGTACGCTCGAGAGGGGGAAGGGGGGTACACTCCCAAAA
GCGTACAAGGGGGAGAAGGGGTCATTGAGCAGAAGTACGTTTGCGCTCGT
AATTTTTCCTAAACTGTCTTTTTTGAGAGAAAAACGCAATATTTTCAAAT
CAAAAAATTTTTTATGCGATTGTCATTTTTCATTTTTCCTTTGGTATTTT
TTTTCATCTTATAGATTCTTTTAATTTCTTGAGATTTTGTTATAAATACG
ATTGGATACCTACATGTTCTACTGTTACAATAGTTTCAAGTTTCGACTTT
GGTTAGGGGGGGGGTGTACTAAAAAGCGTGCGCACGCTGAAGGGGGGTAC
ACATAAAGCGTACGAAAGCGTACTTGCTTTTTGAATGATCCCAATCTATA
ATGAACCTTTCCGATGTTGAAAAAGCAATTTGAATTATTTAGGGGCCATT
CACATATCGATGTTTCCCCACGCCTAACGTCAAATTGACGCAAAGTGTAG
GGGGAGGGGGTCAGAGGCAGTGACGTTAAGAAAATCAATAAAAACATCGA
TTTTTGAGGCTGAAAGAAATAACTAGATAAATTATATAATTGCAGTGTTG
CACATCATGGTTTAAGTCAATCTTTTTTCTTTTTTAGATTCTCCTCATGA
ATTGTCACCAATGCAAGTAGTCTTCACCGAAAATGAAGATATACAATATT
CGTCTGACACCTTTAATGATGAATTATTCGGAGGAGGTATACATTACTTT
TTGATCCTCGATTTTAAGTTTCCGTTCACAATTAAAATTTCAACTTCACA
ATTTAAATATCTAGTTGTTTTTTTTAAGTTTTTTTTTTGTCGATTCTATA
CCTTATTAGGAGCATATAATATTAAAAATTTGCCCTGATCTAAGGGGTGC
CCTATGAAGTGACACAATTCATTACCTCGACCGCTTGTCTTGATATTTTA
ATTTTTCCGATTCAACCAAGAAATTTTCAAGTAATTGTAATTGTAGAGCT
GAAAAATTCTACAACCCATTCTCTACTGATCCGGTAGAGGTTTTTTTCTC
CATCTAGTAATGGTGTAAACAACAGACTGAAACATTCCCATGTTTTTTGT
GGCAGGGGATTTGAAATTCAAGTTGTGAATGAAATAAATATTTTTCAGTG
AGGGTTTCGTTATTTGATTGTTTTCAGCGGGGACAAAAATTAGAGTACAA
TTTTCCACTGGGGATGAGATTTTGGTCCAAGTGGGAGGGGTCATCCCACC
GGGTCTGTAAGGAGGGGGCGTTAATTTCAAACATATTTATGCTATATCGA
ATCATTTTCTAGAATTATTACAATCATGCGATGTTCCTAAGAAACAACCA
GTGGAGCAAGAAGGTAATACATCACCTCATCATAAGATTGATACCGGCTC
ACACGTTTTCCAACATCATTCAAATGTCACGGACCAAAATCAGCCTATTT
TCGGCGGAGGTACTCAAATTTACCTATTTGACAAGTTTATGTTTTACATT
TATGTCAAGCTATTCGAAAGCTTATTTCTGATTAAATCGAAAATTACAAG
TTAAGGGCTCTGAACATAGTTGGAAAATTAATTTTAGTATTTCAACATGA
AAGTTATGCTTTAGGTTCTTAACACTTTTAACAAATAATTGCCTTTATAA
ATTGCTTTTTAATCAAATCCCTTAAGAGTAATTAAGAATTGGCAAATATT
AAAAATTCACTATGGTTAGAGCCCTTAAAGCCAATGGGACCATTCAAAAA
GTACGTACGCTCGAGAGGGGGAAGGGGGGTACTCCTAAAAGCGTACGAAA
GCGTACAAGGGGGAGAAGGGGTCATTGAGGAGAAGTACGTTTACGCTCGT
AATTTTTCCTAAACTGTCTTTTTTGAGAGAAAAACGCAATATTTTCAAAT
CAAAAAATTTTTTATGCGATTGTCATTTTTCATTTTTCCTTTGGTATTTT
TTTTCATCTTATAGATTCTTTTAATTTCTTGAGATTTTGTTATAAATACG
ATTGGATACCTACATGTTCTACTGTTACAATAGTTTCAAGTTTCGACTTT
GGTTAGGGGGGGGGTGTACTAAAAAGCGTGCGCACGCTGAAGGGGGGTAC
ACATAAAGCGTACGAAAGCGTACTTGCTTTTTGAATGATCCCAATCTATA
ATGAACCTTTCCGATGTTGAAAAAGCAATTTGAATTATTTAGGGGCCATT
CACATATCGATGTTTCCCCACGCCTAACGTCAAATTGACGCAAAGTGTAG
GGGGAGGGGGTCAGAGGCAGTGACGTTAAGAAAATCAATAAAAACATCGA
TTTTTGAGGCTGAAAGAAATAACTAGATAAATTATATAATTGCAGTGTTG
CACATCATGGTTTAAGTCAATCTTTTTTCTTTTTTAGATTCTCCTCATGA
ATTGTCACCAATGCAAGTAGTCTTCACCGAAAATGAAGAACTCCAATAGT
AATAAATGGCCTGACTAGCATATCACAAACAGCTGCAACACCTGTTATGA
TGGTACCTTTAGGATTATACTGGTATCCTATGCAGCAAGTATGGCCACAA
ATCCCTCCACACCCTATTGCAAGTGTTAACCAAACCATTCCATTAACTTA
TCTTGATCAAAGTGGATTAAATCTCAGCTTTTCCAATACTGGAGCTATTA
TGACTAATGGAGCACCAGCATGTATGGCGACATCTGCTGCAACACATTCG
AACCCAAGGAAAAGAAAATGTACATTAAATGTTTCCACTCAGACAAATTG
CGAGGATGAAACCGAGATAGACTTTTCTGTTGAAGATTTAAGCTTTCGTC
GTAAAGAAAAACGAAAAGTGAGAAACCGAAAATCTGTAGATAGGTATCAA
GAAGAACAAAAAATACGAGCAAAAAAAATCGAACAGACTGCTCAAGATCT
TCAGCGCCAAAACGAAAGGCTACATTCCCAATCGAGAACAATGGAATCCG
AAAGACATGAGATGTATCAAAAACTTGAAGATGAATTTTACAGAATTATT
TCTGATGACACATTTTCAAGGGATAAATCTGAATTTTGTGAAGCAATGAA
AAGACTTTTTATTTGTAAAAAGTTTGCAGAGAACAATGGAATGGTTTATT
CAATTGGCGCTTGTGAAAGACTTCTGGGAATGTACAAAATTTTCATTGAA
AATAATCTAACTACAGATGAGCGATTAGAGATACAAAGACGTATTCAAAT
TATTTCGTCACCAAATAGTTAGCATTAGATTTATCTTAAATGTTCTTCAA
TCATTTTTGTATATAGTTTTTGGAATTTATCACCTATAAATTCCGTGTCA
TAGACTTGTTGGACCCTCGTCCCACTAAATCACTTTGCCAAAATTTGGTC
TCGGTGTGAAAAAACCTTTAATCTCAGCCCAAATAGGAAATTGACTTTGT
TTTCATCCACATTAAAGTTCTTTGGTAAATAATTCCTTAGTTACTCCTAA
CTTTTGAGTAATTTTAGACACTCCAAACTTCTTTTATATTAAATGGTATT
TTTTTACCTAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046984-exon-scaffold_119-1575043694:96951..97114 | TCONS_00046984-exon-scaffold_119-1575043694:96951..97114 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1575043694:96293..96394 | TCONS_00046984-exon-scaffold_119-1575043694:96293..96394 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1575043694:94506..94550 | TCONS_00046984-exon-scaffold_119-1575043694:94506..94550 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1575043694:92450..93577 | TCONS_00046984-exon-scaffold_119-1575043694:92450..93577 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1510915933:96951..97114 | TCONS_00046984-exon-scaffold_119-1510915933:96951..97114 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1510915933:96293..96394 | TCONS_00046984-exon-scaffold_119-1510915933:96293..96394 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1510915933:94506..94550 | TCONS_00046984-exon-scaffold_119-1510915933:94506..94550 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1510915933:92450..93577 | TCONS_00046984-exon-scaffold_119-1510915933:92450..93577 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1491911889:96951..97114 | TCONS_00046984-exon-scaffold_119-1491911889:96951..97114 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1491911889:96293..96394 | TCONS_00046984-exon-scaffold_119-1491911889:96293..96394 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1491911889:94506..94550 | TCONS_00046984-exon-scaffold_119-1491911889:94506..94550 | Clytia hemisphaerica | exon |
| TCONS_00046984-exon-scaffold_119-1491911889:92450..93577 | TCONS_00046984-exon-scaffold_119-1491911889:92450..93577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:92450..97114 - |
Blast
The following BLAST results are available for this feature:
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