TCONS_00046985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046985
Unique NameTCONS_00046985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046985 ID=TCONS_00046985|Name=TCONS_00046985|organism=Clytia hemisphaerica|type=transcript|length=276bp
atgtaacattgtttcatagaggtcaatagacctgaaaaatacacttctat
aaataaataaataaattgaagAAAACGAGGAATAAAGTGACATCGAGAGA
AATTAAAAGCAGCGTATCATCTTCCAACGTAAACTTCCATTCAAAATGGA
TAGTTACAATACTCCTGGCGGCCTAGTATCGGAAGATGAACATCAACAAC
AATCCGACGACGACttattattattaaattatGATAATggtaatatttta
aattatgacTTAACTCAAGAATCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_119:97202..97808-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046985 ID=TCONS_00046985|Name=TCONS_00046985|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_119:97202..97808- (Clytia hemisphaerica)
ATGTAACATTGTTTCATAGAGGTCAATAGACCTGAAAAATACACTTCTAT
AAATAAATAAATAAATTGAAGAAAACGAGGAATAAAGTGACATCGAGAGA
AATTAAAAGCAGCGTATCATCTTCCAACGTAAACTTCCATTCAAAATGGA
TAGTTACAATACTCGTAAGTTTACATTTTACTTTTAGAAGACTTTCTGAG
TCTCTGAGAACTAGCTCAAAACGTAATACAGGTGCCATTTTTTGGCCAAT
CTTACAGTCAGAGCAATTTGATTTTTTATTACTATGTTTTTCTTGTTACT
TTCTCTACAATCTATAAGGTTCTCTAACTATTTAACGTTCACCGTTTTAA
CAAATTCAACAATTAAATTGTTCTCTACCAACTTCTGCAACGCAGTGAAC
TGTCCCAGCACTATTTTTTTAACTACCTATGGCCTCTATGGTTCTCCTTT
ACTGATCTATAAAACAATCTTGTTTGAATTCTTTTCTTTCCACAGCTGGC
GGCCTAGTATCGGAAGATGAACATCAACAACAATCCGACGACGACTTATT
ATTATTAAATTATGATAATGGTAATATTTTAAATTATGACTTAACTCAAG
AATCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029974XLOC_029974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046985-exon-scaffold_119-1575043694:97645..97808TCONS_00046985-exon-scaffold_119-1575043694:97645..97808Clytia hemisphaericaexon
TCONS_00046985-exon-scaffold_119-1575043694:97202..97313TCONS_00046985-exon-scaffold_119-1575043694:97202..97313Clytia hemisphaericaexon
TCONS_00046985-exon-scaffold_119-1510915933:97645..97808TCONS_00046985-exon-scaffold_119-1510915933:97645..97808Clytia hemisphaericaexon
TCONS_00046985-exon-scaffold_119-1510915933:97202..97313TCONS_00046985-exon-scaffold_119-1510915933:97202..97313Clytia hemisphaericaexon
TCONS_00046985-exon-scaffold_119-1491911889:97645..97808TCONS_00046985-exon-scaffold_119-1491911889:97645..97808Clytia hemisphaericaexon
TCONS_00046985-exon-scaffold_119-1491911889:97202..97313TCONS_00046985-exon-scaffold_119-1491911889:97202..97313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:97202..97808 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.627601	0.439398	2.17706	0	0.347269	4.16143	7.20282	3.8491	3.81293	0	1.60483	8.31436	8.70038	0.504147	0	0.59786	1.08708	0	1.99856	3.57491	3.0522	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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