TCONS_00046991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046991
Unique NameTCONS_00046991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046991 ID=TCONS_00046991|Name=TCONS_00046991|organism=Clytia hemisphaerica|type=transcript|length=583bp
GCAGAATagagaaaaatttgacaaaaatgttttttcttcgaaaatcagAC
TCCGTCAGTTTTTGGCAACCACCATTTTCCATCACTGAGCAAAAAAtcat
gagccaatcccgagaaaagctggtaacagacgaacgaacgaacgaacgaa
agaaCATcaattaatttaaaggacctctgtggtaggtccaaaaatcaatg
TTTTACCCAATATGATACAAGATACTTATGCGAAAGGTGCATTTCATAAT
ATAATATAGTTGAGCGTCTTTTCACCTTTCATTGAGAGCTGTCTATATTG
GGTTTAAATCATTATAATATTTTGGCGTCCCTCTTGAAGTAGCTCTACTG
GGGGCCTGTGCAACCCTGACCCTTCTCCTGCCACCACGGCACTGTCTAAA
ACGATCAAGTTATTCTAGACTTCTTTATAGCTTTAATTTCTTCACTTGAC
TTTTAGGCTCATTTTACGTTTATTCCCACGAAGTGGGATAAATTTTgcat
taaaaaagttcttaaagaaaaaatacCTTTGGCTTTGAGGTTTCTAAATT
TTAAGGGTTTCAAGAGTGCAAACTTCATAGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_119:42506..43088

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046991 ID=TCONS_00046991|Name=TCONS_00046991|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at scaffold_119:42506..43088 (Clytia hemisphaerica)
GAACTATGAAGTTTGCACTCTTGAAACCCTTAAAATTTAGAAACCTCAAA
GCCAAAGgtattttttctttaagaacttttttaatgcAAAATTTATCCCA
CTTCGTGGGAATAAACGTAAAATGAGCCTAAAAGTCAAGTGAAGAAATTA
AAGCTATAAAGAAGTCTAGAATAACTTGATCGTTTTAGACAGTGCCGTGG
TGGCAGGAGAAGGGTCAGGGTTGCACAGGCCCCCAGTAGAGCTACTTCAA
GAGGGACGCCAAAATATTATAATGATTTAAACCCAATATAGACAGCTCTC
AATGAAAGGTGAAAAGACGCTCAACTATATTATATTATGAAATGCACCTT
TCGCATAAGTATCTTGTATCATATTGGGTAAAAcattgatttttggacct
accacagaggtcctttaaattaattgATGttctttcgttcgttcgttcgt
tcgtctgttaccagcttttctcgggattggctcatgaTTTTTTGCTCAGT
GATGGAAAATGGTGGTTGCCAAAAACTGACGGAGTctgattttcgaagaa
aaaacatttttgtcaaatttttctctATTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029980XLOC_029980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046991-exon-scaffold_119-1491911889:42506..43088TCONS_00046991-exon-scaffold_119-1491911889:42506..43088Clytia hemisphaericaexon
TCONS_00046991-exon-scaffold_119-1510915933:42506..43088TCONS_00046991-exon-scaffold_119-1510915933:42506..43088Clytia hemisphaericaexon
TCONS_00046991-exon-scaffold_119-1575043694:42506..43088TCONS_00046991-exon-scaffold_119-1575043694:42506..43088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:42506..43088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.348861	0.187235	2.08153	2.95413	0.639622	0.484575	0.379147	0.624905	0.0799369	0.222623	0	0	0.0636732	0.262072	0.108039	0.11561	0.0715749	0	0.201677	0.10623	0.185778	0	0.334797	0.115979	0.440564	0.714513	0	0	0.212499	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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