TCONS_00046992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046992
Unique NameTCONS_00046992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046992 ID=TCONS_00046992|Name=TCONS_00046992|organism=Clytia hemisphaerica|type=transcript|length=491bp
CTCTTGcttaaaacaatttgaaaaatgtattgTATTTAGGTTTTAGTTAA
TTTTGATCTAAAAACAATTCAAACTAAAAGAAATTCGGAATACCGTAAAA
ATGACGTTTTGTTGATCATTAAACCTGTTTAACCATTTGTTTATCAGGTT
TACATCCTCTTGACACCTTTTTGCCAAGAAAGAAGCCCATTATGACTGCT
TACCCTTGACCGAGGGAAGAAACAAAGATATGAAAGTGGTGGTATTGCGG
GAAGAGCTAAGACGAAGAAAATTGTCAAGCAGTGGGGTGAAAGCGGTACT
GGCGGAAAGGTTACTAAACTACTGGAGAGAGAACAAGGAAGAACACGAGC
AAAGCAAgaagagaagaagaaaatgacgGGCCCACAAATTTTGTTGTACA
ATTTGATGATATCGATAAACTTAGATAGTTTATGGAAAAATGAACATGCC
CAATGCGAAATTGTACTGAAATAAAGAGTcacgtactctcg
Run BLAST on NCBI

transcript from alignment at scaffold_119:48185..48675

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046992 ID=TCONS_00046992|Name=TCONS_00046992|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at scaffold_119:48185..48675 (Clytia hemisphaerica)
cgagagtacgtgACTCTTTATTTCAGTACAATTTCGCATTGGGCATGTTC
ATTTTTCCATAAACTATCTAAGTTTATCGATATCATCAAATTGTACAACA
AAATTTGTGGGCCcgtcattttcttcttctcttcTTGCTTTGCTCGTGTT
CTTCCTTGTTCTCTCTCCAGTAGTTTAGTAACCTTTCCGCCAGTACCGCT
TTCACCCCACTGCTTGACAATTTTCTTCGTCTTAGCTCTTCCCGCAATAC
CACCACTTTCATATCTTTGTTTCTTCCCTCGGTCAAGGGTAAGCAGTCAT
AATGGGCTTCTTTCTTGGCAAAAAGGTGTCAAGAGGATGTAAACCTGATA
AACAAATGGTTAAACAGGTTTAATGATCAACAAAACGTCATTTTTACGGT
ATTCCGAATTTCTTTTAGTTTGAATTGTTTTTAGATCAAAATTAACTAAA
ACCTAAATAcaatacatttttcaaattgttttaagCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029981XLOC_029981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046992-exon-scaffold_119-1491911889:48185..48675TCONS_00046992-exon-scaffold_119-1491911889:48185..48675Clytia hemisphaericaexon
TCONS_00046992-exon-scaffold_119-1510915933:48185..48675TCONS_00046992-exon-scaffold_119-1510915933:48185..48675Clytia hemisphaericaexon
TCONS_00046992-exon-scaffold_119-1575043694:48185..48675TCONS_00046992-exon-scaffold_119-1575043694:48185..48675Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:48185..48675 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125808	0.158712	0.569783	0.557444	0	0.134066	0.161746	0	0.318047	0	0.25492	0.167574	0.167341	0	0	0	0.28333	0	0	0.139945	0.486552	0	0	0.393429	0.135074	0	0.172507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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