|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046993 ID=TCONS_00046993|Name=TCONS_00046993|organism=Clytia hemisphaerica|type=transcript|length=2186bp
attgaaaatatttccctTTGTCATTGCAAAGACCTCTAAAGCTCTGTCTA
TATTTTGACCACGACAAATATTTCCCAATAAATCCCTCGAGAACCGTTCA
AAATTGTTCAATGAGAAATGTAAAGCGATGCTAATTGGGGCAATGTATTT
TCTCTTCCAGAGAGCAACAGGATCAAATACAAAATCAGAAAGCGACCATC
AAAGAGCAAGCCAAAATCATAGGTATGTAAAATTTGGTGTTAGATCTGTT
TACTAAACCTGTTTTCTATTTGGTGCAATCGAACATTCCGATTGGTGagg
atttttatcaaattctcgGAAACACTCAGCTTTTTTATACGACAACATTT
GAGCTTTTAGACCCTGTCATGATAAGGTCCAAAGTCCTAAGTTGAGTTCT
CAAACTCAAACTTACACTCTACATTCGCACCTCAAGTTACAAGGCTTTCA
AATCAATTGTGGTTTTAAAGTCTTGCTTGGAATTCTCCTTTTGTCACTTA
TTTTATGAAGATGATAATATCCCTTAGTCCTTAACCTTCAAGAATTGGGG
CTTTCTTGTTTTATCTTGCATTACTTATTTTATAATGTAATAATGAAAAA
GGAACCAGCCCATTGAAGCTACTGTATAGTTTCTGACAAAGAAAGTGAta
cttttcatttatttttagcTGACCTGAAGAGAAGAAATAAAGAGTTGACC
GAATCTCAAGAGATGTATGTTCAATCGAGCCGATGGCCTGTTTCTGTAAG
TAACggatttcttttgaagatttcactTTCATGATTTGTGTTGGTGAAGA
GCTAATTCACTAAAACAAAACTTTCGACAAGAACAATAATGTATGAAGTC
TTGAACTAAAGATCTATCCAAAAAAGTAAGTGGGCAATCTGTTTATTCAA
CGATCTCTCAGCAGCCTCACATTGAAAAGTCATATACCTTTAGAGACTTG
ATAATTTTAAGGAGAATATTTCAGtggatttaaaattttccaatacTGTA
TTAAAAAACGAAGAGGAAAAATGAAGAGGAAAAATGTGAACgttttttgc
aatatttgaaccacgctgatttcaaatctgtATTCAGATTCTTTGTATCT
AGCTTAGGTCAAAAATACGAAAACAATCTAAATTCTCTTTCTTTGGAGGG
CTATATCGTCTAACCTAAGTAAgatatgaaaaaagaaaagaagtttGTAG
TTGACTTTGAATTGTTTGTATGTATTGAACATCCCGCTCCCACAGAACAA
GCGTTACGTTTGCTGTAaactgaaatttcttttttcccttctTTTCCATA
AATCATTTTGTTCTAAGATTTTACTTTCTTATCTATGGTGGTCGAGGCGA
GCCAATTTAACAGCACACAAGTGTGTCTTTATTAGCCCCATCACAAGCGA
AGTGAAAGAGTTTCTACCAATGTAACCGATTTCCTTGTCTCAAGTTAGAC
ATTTTTATTCCGacgaaaaattaaacttttcctAACTGAACTATTTACAT
ATCTTATCAATAATAATATCTTTCACATTATTTAAAGTAAACAAAGCTTA
TCAGAGCTTATTTTACACATTTCGTTTTTTTCAGCCCAAAAATCGTCCGC
CAATTTTCGAGGACTTTGAGGACCTGGAAAATATTGAACTCGCTGAACTG
GTCAGCACTACTAATTATttacttcttctttttttcttcttcttcttgtt
tAAATTAATTATCGGATTCACAATACTAAAAGTGGACgaatactttttga
aatatcaATGGGTATAAGGCAATAATAAAGGCTAACAGAATTTTCACTCC
TAAGTACGTtgttttaaattgaaaattcaaaaaatttccatgcATAGAAT
CTGAACCTAATAAACCATATCAAAAGGTAACAACTCGCTGGAAAAATATT
CCCGAGTGGATGAATTTTGCAATTAAAAATTCCCTGCTATAGAGACTTTT
CTTAAAACAACTCTTTTAGGATCAGGCGTATCGAAAGTGCTATCTAGCCT
CATGTCAAAGACAATAATGATTCAAtggatatgattttttttattttcag
tgcACTGGAGGAGATGGACGAAATCCAAGAAAAATTAAGGTTTGTTCTGA
AAGAAGTAAGTAGTAATTTGGCTTTTAAAATGGgagatttgagaaaaaaa
tcaccttctggtaaaattgtttatttaagatttttt Run BLAST on NCBI transcript from alignment at scaffold_119:60613..62798 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046993 ID=TCONS_00046993|Name=TCONS_00046993|organism=Clytia hemisphaerica|type=transcript|length=2186bp|location=Sequence derived from alignment at scaffold_119:60613..62798 (Clytia hemisphaerica)
aaaaaatcttaaataaacaattttaccagaaggtgatttttttctcaaat
ctcCCATTTTAAAAGCCAAATTACTACTTACTTCTTTCAGAACAAACCTT
AATTTTTCTTGGATTTCGTCCATCTCCTCCAGTgcactgaaaataaaaaa
aatcatatccaTTGAATCATTATTGTCTTTGACATGAGGCTAGATAGCAC
TTTCGATACGCCTGATCCTAAAAGAGTTGTTTTAAGAAAAGTCTCTATAG
CAGGGAATTTTTAATTGCAAAATTCATCCACTCGGGAATATTTTTCCAGC
GAGTTGTTACCTTTTGATATGGTTTATTAGGTTCAGATTCTATgcatgga
aattttttgaattttcaatttaaaacaACGTACTTAGGAGTGAAAATTCT
GTTAGCCTTTATTATTGCCTTATACCCATtgatatttcaaaaagtattcG
TCCACTTTTAGTATTGTGAATCCGATAATTAATTTaaacaagaagaagaa
gaaaaaaagaagaagtaaATAATTAGTAGTGCTGACCAGTTCAGCGAGTT
CAATATTTTCCAGGTCCTCAAAGTCCTCGAAAATTGGCGGACGATTTTTG
GGCTGAAAAAAACGAAATGTGTAAAATAAGCTCTGATAAGCTTTGTTTAC
TTTAAATAATGTGAAAGATATTATTATTGATAAGATATGTAAATAGTTCA
GTTaggaaaagtttaatttttcgtCGGAATAAAAATGTCTAACTTGAGAC
AAGGAAATCGGTTACATTGGTAGAAACTCTTTCACTTCGCTTGTGATGGG
GCTAATAAAGACACACTTGTGTGCTGTTAAATTGGCTCGCCTCGACCACC
ATAGATAAGAAAGTAAAATCTTAGAACAAAATGATTTATGGAAAagaagg
gaaaaaagaaatttcagttTACAGCAAACGTAACGCTTGTTCTGTGGGAG
CGGGATGTTCAATACATACAAACAATTCAAAGTCAACTACaaacttcttt
tcttttttcatatcTTACTTAGGTTAGACGATATAGCCCTCCAAAGAAAG
AGAATTTAGATTGTTTTCGTATTTTTGACCTAAGCTAGATACAAAGAATC
TGAATacagatttgaaatcagcgtggttcaaatattgcaaaaaacGTTCA
CATTTTTCCTCTTCATTTTTCCTCTTCGTTTTTTAATACAgtattggaaa
attttaaatccaCTGAAATATTCTCCTTAAAATTATCAAGTCTCTAAAGG
TATATGACTTTTCAATGTGAGGCTGCTGAGAGATCGTTGAATAAACAGAT
TGCCCACTTACTTTTTTGGATAGATCTTTAGTTCAAGACTTCATACATTA
TTGTTCTTGTCGAAAGTTTTGTTTTAGTGAATTAGCTCTTCACCAACACA
AATCATGAAagtgaaatcttcaaaagaaatccGTTACTTACAGAAACAGG
CCATCGGCTCGATTGAACATACATCTCTTGAGATTCGGTCAACTCTTTAT
TTCTTCTCTTCAGGTCAgctaaaaataaatgaaaagtaTCACTTTCTTTG
TCAGAAACTATACAGTAGCTTCAATGGGCTGGTTCCTTTTTCATTATTAC
ATTATAAAATAAGTAATGCAAGATAAAACAAGAAAGCCCCAATTCTTGAA
GGTTAAGGACTAAGGGATATTATCATCTTCATAAAATAAGTGACAAAAGG
AGAATTCCAAGCAAGACTTTAAAACCACAATTGATTTGAAAGCCTTGTAA
CTTGAGGTGCGAATGTAGAGTGTAAGTTTGAGTTTGAGAACTCAACTTAG
GACTTTGGACCTTATCATGACAGGGTCTAAAAGCTCAAATGTTGTCGTAT
AAAAAAGCTGAGTGTTTCcgagaatttgataaaaatcctCACCAATCGGA
ATGTTCGATTGCACCAAATAGAAAACAGGTTTAGTAAACAGATCTAACAC
CAAATTTTACATACCTATGATTTTGGCTTGCTCTTTGATGGTCGCTTTCT
GATTTTGTATTTGATCCTGTTGCTCTCTGGAAGAGAAAATACATTGCCCC
AATTAGCATCGCTTTACATTTCTCATTGAACAATTTTGAACGGTTCTCGA
GGGATTTATTGGGAAATATTTGTCGTGGTCAAAATATAGACAGAGCTTTA
GAGGTCTTTGCAATGACAAagggaaatattttcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046993-exon-scaffold_119-1491911889:60613..62798 | TCONS_00046993-exon-scaffold_119-1491911889:60613..62798 | Clytia hemisphaerica | exon |
| TCONS_00046993-exon-scaffold_119-1510915933:60613..62798 | TCONS_00046993-exon-scaffold_119-1510915933:60613..62798 | Clytia hemisphaerica | exon |
| TCONS_00046993-exon-scaffold_119-1575043694:60613..62798 | TCONS_00046993-exon-scaffold_119-1575043694:60613..62798 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_119 | supercontig | scaffold_119:60613..62798 . |
Blast
The following BLAST results are available for this feature:
|
