TCONS_00046996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046996
Unique NameTCONS_00046996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046996 ID=TCONS_00046996|Name=TCONS_00046996|organism=Clytia hemisphaerica|type=transcript|length=500bp
TAGCTCTTCCCACACCATCACCACAACCTGCTCCTCTCTCCAAACGAGGC
CGCCCACGACGAGAATATGGAGCGAGGAGAAGGATCGGTCAAGGAAAGGG
TCATCATATCGGTAAACTTACAAAACGCCACAAAAAGTCGGCCGATGATG
ACTGCTTACCCTTGACTGAGGGAAGAATCAAAGATATGAAAGTGGTGGAA
TTGTGGGAAGAGCTCAGAAGAAGAAACCTATCGTGCAAAGGGGTGAAAGC
GGTGTTAGCGGAAAAGTTATTGAACTTCTGGAGAGAGAACGAGGAAGAAC
ACGAGCAAAGCAAGAAGAGAAGAagaaatgatgatgatgatgatggcgGC
CCCGGGCCCGGTGGTATGTCAGTTTAACttatttctcattattttttgtt
tgatatttttttagatttaatttattaactttttaatttGACATACCCTG
GGTTACTTCTCTTCTTTCTTTGCCTTTGTTCTTTCTCGTTCATTTCCGAC
Run BLAST on NCBI

protein sequence of TCONS_00046996-protein

>TCONS_00046996-protein ID=TCONS_00046996-protein|Name=TCONS_00046996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
ALPTPSPQPAPLSKRGRPRREYGARRRIGQGKGHHIGKLTKRHKKSADDD
CLPLTEGRIKDMKVVELWEELRRRNLSCKGVKAVLAEKLLNFWRENEEEH
EQSKKRRRNDDDDDGGPGPGGMSV
Run BLAST on NCBI

transcript from alignment at scaffold_119:113635..114134

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046996 ID=TCONS_00046996|Name=TCONS_00046996|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at scaffold_119:113635..114134 (Clytia hemisphaerica)
GTCGGAAATGAACGAGAAAGAACAAAGGCAAAGAAAGAAGAGAAGTAACC
CAGGGTATGTCaaattaaaaagttaataaattaaatctaaaaaaatatca
aacaaaaaataatgagaaataaGTTAAACTGACATACCACCGGGCCCGGG
GCcgccatcatcatcatcatcatttctTCTTCTCTTCTTGCTTTGCTCGT
GTTCTTCCTCGTTCTCTCTCCAGAAGTTCAATAACTTTTCCGCTAACACC
GCTTTCACCCCTTTGCACGATAGGTTTCTTCTTCTGAGCTCTTCCCACAA
TTCCACCACTTTCATATCTTTGATTCTTCCCTCAGTCAAGGGTAAGCAGT
CATCATCGGCCGACTTTTTGTGGCGTTTTGTAAGTTTACCGATATGATGA
CCCTTTCCTTGACCGATCCTTCTCCTCGCTCCATATTCTCGTCGTGGGCG
GCCTCGTTTGGAGAGAGGAGCAGGTTGTGGTGATGGTGTGGGAAGAGCTA

Coding sequence (CDS) from alignment at scaffold_119:113635..114134

>TCONS_00046996 ID=TCONS_00046996|Name=TCONS_00046996|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_119:113635..114134 (Clytia hemisphaerica)
TTAAACTGACATACCACCGGGCCCGGGGCcgccatcatcatcatcatcat
ttctTCTTCTCTTCTTGCTTTGCTCGTGTTCTTCCTCGTTCTCTCTCCAG
AAGTTCAATAACTTTTCCGCTAACACCGCTTTCACCCCTTTGCACGATAG
GTTTCTTCTTCTGAGCTCTTCCCACAATTCCACCACTTTCATATCTTTGA
TTCTTCCCTCAGTCAAGGGTAAGCAGTCATCATCGGCCGACTTTTTGTGG
CGTTTTGTAAGTTTACCGATATGATGACCCTTTCCTTGACCGATCCTTCT
CCTCGCTCCATATTCTCGTCGTGGGCGGCCTCGTTTGGAGAGAGGAGCAG
GTTGTGGTGATGGTGTGGGAAGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029985XLOC_029985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046996-proteinTCONS_00046996-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046996-exon-scaffold_119-1491911889:113635..114134TCONS_00046996-exon-scaffold_119-1491911889:113635..114134Clytia hemisphaericaexon
TCONS_00046996-exon-scaffold_119-1510915933:113635..114134TCONS_00046996-exon-scaffold_119-1510915933:113635..114134Clytia hemisphaericaexon
TCONS_00046996-exon-scaffold_119-1575043694:113635..114134TCONS_00046996-exon-scaffold_119-1575043694:113635..114134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:113635..114134 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.179444	0.381706	0.13804	0	0	0.12992	0.156743	0	0	0.127256	0.123518	0	0	0	0	0	0	0	0.1296	0	0	0	0.155538	0	0	0	0	0	0.135318	0.137868
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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