TCONS_00046997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046997
Unique NameTCONS_00046997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046997 ID=TCONS_00046997|Name=TCONS_00046997|organism=Clytia hemisphaerica|type=transcript|length=793bp
GTTTTTGtgtcaatttttcttgtttacaAAGCTCGTTAAATGAATGGTCG
ACTTTCTTATCTAGTGCACTGAATGGGTCGAAAGTAACGTTTATAATCAA
GTCATGGTTGCTCATTTTCAGCAGTTTCCTTGCAATTTCGTGTAAAGTGA
TTGATTTGCCAGCGCCATAGGAAGCTTGGATCAGCTTCCAGTTCGACTGG
CTTTCGATGCAGGAAATTTGAGGTTCAGTTAACAGGATTGTCTTAACGTT
ATTAGTGTCATTTCCTGAAACACGAGGAAGGTAGATTTTGGTTTGTGCCA
TGCTTGCCATCATGTTCCCTGCAATGATTTCCATTATTCCTGGCGTTGAA
GGTGATGAAAGCTTTCGATTATCTCGGATTAATTTTAAGAAGTTGGTCAT
CCATTGTCCAAAGTTTTCATCGAAAGAAATGACAAAGTCCTGACTCTTTG
TGTTTAGATTTAAGCATGGATGTTGCTTCATTTTGTTCAAGTCGCTTGAA
GCCGGTAAGACGAGAACTCCAACAATAGTAAACTGTTCATTTTGGAGAAT
CTGCCTGTGAACATAACACCACGTTTTTAAGACTGCATTAACTTTCGCCA
AATCCTTGTCAATATGTTTTTCGTTTTCACCGACCACGAAAACAAACAGC
AAGCCACGATTCGGATAAATACAAACGATTGTGTTGTCATAGTAATCAGG
GCACTCAGAAAAATGCAGAACACTCTCGATCTTTTCATCATTGAGTCCAA
GTATTCTGAGATGGCTTATGGGATTATATCCGACGAGAATTNN
Run BLAST on NCBI

protein sequence of TCONS_00046997-protein

>TCONS_00046997-protein ID=TCONS_00046997-protein|Name=TCONS_00046997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
XILVGYNPISHLRILGLNDEKIESVLHFSECPDYYDNTIVCIYPNRGLLF
VFVVGENEKHIDKDLAKVNAVLKTWCYVHRQILQNEQFTIVGVLVLPASS
DLNKMKQHPCLNLNTKSQDFVISFDENFGQWMTNFLKLIRDNRKLSSPST
PGIMEIIAGNMMASMAQTKIYLPRVSGNDTNNVKTILLTEPQISCIESQS
NWKLIQASYGAGKSITLHEIARKLLKMSNHDLIINVTFDPFSALDKKVDH
SFNELCKQEKLTQK
Run BLAST on NCBI

transcript from alignment at scaffold_119:194340..195132

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046997 ID=TCONS_00046997|Name=TCONS_00046997|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at scaffold_119:194340..195132 (Clytia hemisphaerica)
NNAATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGGACT
CAATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGCCCTGATT
ACTATGACAACACAATCGTTTGTATTTATCCGAATCGTGGCTTGCTGTTT
GTTTTCGTGGTCGGTGAAAACGAAAAACATATTGACAAGGATTTGGCGAA
AGTTAATGCAGTCTTAAAAACGTGGTGTTATGTTCACAGGCAGATTCTCC
AAAATGAACAGTTTACTATTGTTGGAGTTCTCGTCTTACCGGCTTCAAGC
GACTTGAACAAAATGAAGCAACATCCATGCTTAAATCTAAACACAAAGAG
TCAGGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGATGACCA
ACTTCTTAAAATTAATCCGAGATAATCGAAAGCTTTCATCACCTTCAACG
CCAGGAATAATGGAAATCATTGCAGGGAACATGATGGCAAGCATGGCACA
AACCAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACTAATAACGTTA
AGACAATCCTGTTAACTGAACCTCAAATTTCCTGCATCGAAAGCCAGTCG
AACTGGAAGCTGATCCAAGCTTCCTATGGCGCTGGCAAATCAATCACTTT
ACACGAAATTGCAAGGAAACTGCTGAAAATGAGCAACCATGACTTGATTA
TAAACGTTACTTTCGACCCATTCAGTGCACTAGATAAGAAAGTCGACCAT
TCATTTAACGAGCTTtgtaaacaagaaaaattgacaCAAAAAC

Coding sequence (CDS) from alignment at scaffold_119:194340..195132

>TCONS_00046997 ID=TCONS_00046997|Name=TCONS_00046997|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_119:194340..195132 (Clytia hemisphaerica)
NNAATTCTCGTCGGATATAATCCCATAAGCCATCTCAGAATACTTGGACT
CAATGATGAAAAGATCGAGAGTGTTCTGCATTTTTCTGAGTGCCCTGATT
ACTATGACAACACAATCGTTTGTATTTATCCGAATCGTGGCTTGCTGTTT
GTTTTCGTGGTCGGTGAAAACGAAAAACATATTGACAAGGATTTGGCGAA
AGTTAATGCAGTCTTAAAAACGTGGTGTTATGTTCACAGGCAGATTCTCC
AAAATGAACAGTTTACTATTGTTGGAGTTCTCGTCTTACCGGCTTCAAGC
GACTTGAACAAAATGAAGCAACATCCATGCTTAAATCTAAACACAAAGAG
TCAGGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGATGACCA
ACTTCTTAAAATTAATCCGAGATAATCGAAAGCTTTCATCACCTTCAACG
CCAGGAATAATGGAAATCATTGCAGGGAACATGATGGCAAGCATGGCACA
AACCAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACTAATAACGTTA
AGACAATCCTGTTAACTGAACCTCAAATTTCCTGCATCGAAAGCCAGTCG
AACTGGAAGCTGATCCAAGCTTCCTATGGCGCTGGCAAATCAATCACTTT
ACACGAAATTGCAAGGAAACTGCTGAAAATGAGCAACCATGACTTGATTA
TAAACGTTACTTTCGACCCATTCAGTGCACTAGATAAGAAAGTCGACCAT
TCATTTAACGAGCTTtgtaaacaagaaaaattgacaCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029986XLOC_029986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046997-exon-scaffold_119-1491911889:194340..195132TCONS_00046997-exon-scaffold_119-1491911889:194340..195132Clytia hemisphaericaexon
TCONS_00046997-exon-scaffold_119-1510915933:194340..195132TCONS_00046997-exon-scaffold_119-1510915933:194340..195132Clytia hemisphaericaexon
TCONS_00046997-exon-scaffold_119-1575043694:194340..195132TCONS_00046997-exon-scaffold_119-1575043694:194340..195132Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046997-proteinTCONS_00046997-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_119supercontigscaffold_119:194340..195132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.872564	1.40283	0.580294	0.0915326	3.34873	1.99669	6.42036	6.34505	4.85666	8.64662	8.74497	4.61286	19.308	13.8052	10.9243	15.203	8.31694	13.1831	22.8966	23.9233	15.4627	16.2031	8.44773	10.2641	14.5233	11.1361	49.4267	41.0794	31.4529	26.032
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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