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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047003 ID=TCONS_00047003|Name=TCONS_00047003|organism=Clytia hemisphaerica|type=transcript|length=1679bpRun BLAST on NCBI protein sequence of TCONS_00047003-protein >TCONS_00047003-protein ID=TCONS_00047003-protein|Name=TCONS_00047003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp MTTLLMPLASARSLLPPFVIFGVTPHYYISSTCLRLMKFALPQDTYEKIDRun BLAST on NCBI transcript from alignment at scaffold_120:191261..195284+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047003 ID=TCONS_00047003|Name=TCONS_00047003|organism=Clytia hemisphaerica|type=transcript|length=4024bp|location=Sequence derived from alignment at scaffold_120:191261..195284+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_120:191261..195284+ >TCONS_00047003 ID=TCONS_00047003|Name=TCONS_00047003|organism=Clytia hemisphaerica|type=CDS|length=12177bp|location=Sequence derived from alignment at scaffold_120:191261..195284+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047003 vs. Swiss-Prot (Human)
Match: PLCE (1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon OS=Homo sapiens GN=AGPAT5 PE=1 SV=3) HSP 1 Score: 232.261 bits (591), Expect = 6.734e-70 Identity = 123/356 (34.55%), Postives = 202/356 (56.74%), Query Frame = 2
Query: 161 MTTLLMPLASARSLLPPFVIFGVTPHYYISSTCLRLMKFALPQDTYEKIDHMMYHSYQSLVTYFFETYTGTKVYFYGEDLPTDTTENVLYICNHQSAIDWSLANFVGIRQNSIGQIRYVMKELLKYLPFFGPYFMQHGCIFVRRDGKQDTELRRRWIRFHDDRVRGYWIVIFPEGTRYTSKKKALIEKSEQAALAAGYEPFQNVLFPRTKAFELSLEYLGD-LDAVYDLTIAFKIPWLPLKSKQLGPSLLEFVSIFGREVHMHFRRIPAKQIDGSAEQRKKWLYDTFKEKDRLLDHFY---NLQSGGTFPGEQREVPLKQHQVYPYAFFYSALLGVTLATETGRYYYAKAWQFGAI 1216
+ +L++ S R LLP V+ G P Y ++ RL+ LP Y+ +D +Y YQS+V +FFE YTG ++ YG DLP + EN++Y+ NHQS +DW +A+ + IRQN++G +RYV+KE LK+LP +G YF QHG I+V+R K + + R ++ + D ++VIFPEGTRY ++ ++ S+ A G ++VL PR KA ++ + + + LDA+YD+T+ ++ + ++ P++ EF+ ++H+H RI K + E ++WL++ F+ KD++L FY + + FPG+ L + P S L L T+ GR Y W +G +
Sbjct: 2 LLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVLFFFENYTGVQILLYG-DLPKNK-ENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQRRE-SPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWIYGTL 354 The following BLAST results are available for this feature:
BLAST of TCONS_00047003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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