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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047010 ID=TCONS_00047010|Name=TCONS_00047010|organism=Clytia hemisphaerica|type=transcript|length=1886bp
gttatgagtATCTTTTTTGTGTGAAACATCAAAAGcaattttcttccatt
ttagTCAAGGAATATAAGAAAGGATTGAAGAGAGGGaggataaaaaaaga
ataaaattgaAAGCTGTTTTTAGACAGGACACGCGAACGAGAAGCATTTG
AACAGAAAGAACAGTAGAAGCAAACGATGgatgaaaactcaaaaagtacG
GATACCTATAACATCTATCAAAACATCAGTCATTCTGCACATGCAAGATA
CACAGGGCAATGTTTCACACCAATACAATGGACAGATGATACACATCACC
GGCCTTCATACAACCTACACCGCATCTCAAGCATTTTCATTGGTATTCCT
TTATTCATCATTGGTATCATCACCGACATTGTATGTACCACGTTGTGGAA
GCGGTTAATGAACCGTGCACGGAATAGAAATATCACATGCGGAATCTATC
TAAACACCATTGCTATCATAGATATCGGGACACTACTCGGATTTCTAACA
TGTGACATCCTCGTGTATGCTAACCCAAACATCCTTCAGAATCACACTTA
TAACCAGTACTACGCCATCATTGGCTACCCGTCATACACTTTCTTCATGT
TTCTCAATTTCTGGTTAATAGCTGGCGTTGATGCTTGTCGCTTAACTATG
GTCTTGTATCCGATCAAACTTCGACAATCCGAAACTAGAATCACCAATAT
CGCAATATCGCTCATCATAACCGTCATGTTTGCCGTTAATATACCGAATT
TCTTCGCATACGGCGCCTCATACACGGCGAATGGTATACCGTGCCGATGG
CTTACCGCTCTTTCTCTCACAGAATCTTTCAAGAATTATATTTTCGGATT
CCAGTGTGTTTTCTTAACTGTAGTACCATGGTTTGTAATACTTCTAGTCA
ACATTTCGATGAATATATACCAATCTACCGTCCCAGACTACATTccaaag
tcaaaacaaaaagcTGTCGAAATGGGCCAATTATTACGCGCCATGTCGAT
TTATTTTATAACTATCATCTTTTGTCAATGTTTGGTGCAGTGTTTCTTTT
TAAGAACGCATCAAACATCTGACCAATGGGAACGCGTGGACTCAGTATTC
GCCTTTGCTAAACTTGGCGTTATTATATACTCTTCAactaaatttttcct
tttcgtaACCGTTAGTAAAACATTCCGGAAAGCTTTTTTACATATGTTTT
CAAACCCGAGAACAGTATACGCACTTGTAGTGGCACGCAAAGAAAGACAT
AATCGATCAAATAAAGATAGAATAAGGAACACTTTGAAACACGCTTTTTC
GGACGAAGCGTGAATGCAGTTGGTAGCTTACCTGTTAATAGTGTTCCAAT
GAAATACTTTACGACCACCGACCATTCAGAAACGTTCCCTGCTTCAAGTT
ATACTGTTCGAAACCTGCAAGAAAACATTAGAATTGAGCTCCATTCTTAA
AAAGAGAAACGTTTACCCTTCCGTAATCTCAGATTTTGCTCTTTATCATT
TTTCAGAACAAGAGAGGCGGTTATTTTCTAATTATCTCGCTTGTAGACTg
cttatatatatataataattCTTACTCCCTCGTTAGAACTTCTGTGACGT
TTCAAATCTCAGActcaaaaataaaacacaaCCAACTGTAGGGAGAGGAG
GTCGCCGGTACTAAAATCTCTCACTTAGATGAGTACTAAAAGGGCTATGG
AAAATTTTTCGGAAGTGGTATATTTTAGTACCTATACAGAGACACAGAGA
CCACCCAATTTTGGTATTCCCAGGATCCTTTTCCTCAAATTAAAGTGCTG
CTTTTTGCAAAAACTTGATACTTTTAAGCAATGCTGCTTTATAAGATCGA
ACATCAAACAATCATTAAAGACATTTGActgaatgc Run BLAST on NCBI protein sequence of TCONS_00047010-protein >TCONS_00047010-protein ID=TCONS_00047010-protein|Name=TCONS_00047010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=378bp
MDENSKSTDTYNIYQNISHSAHARYTGQCFTPIQWTDDTHHRPSYNLHRI
SSIFIGIPLFIIGIITDIVCTTLWKRLMNRARNRNITCGIYLNTIAIIDI
GTLLGFLTCDILVYANPNILQNHTYNQYYAIIGYPSYTFFMFLNFWLIAG
VDACRLTMVLYPIKLRQSETRITNIAISLIITVMFAVNIPNFFAYGASYT
ANGIPCRWLTALSLTESFKNYIFGFQCVFLTVVPWFVILLVNISMNIYQS
TVPDYIPKSKQKAVEMGQLLRAMSIYFITIIFCQCLVQCFFLRTHQTSDQ
WERVDSVFAFAKLGVIIYSSTKFFLFVTVSKTFRKAFLHMFSNPRTVYAL
VVARKERHNRSNKDRIRNTLKHAFSDEA Run BLAST on NCBI transcript from alignment at scaffold_120:408216..411038+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047010 ID=TCONS_00047010|Name=TCONS_00047010|organism=Clytia hemisphaerica|type=transcript|length=2823bp|location=Sequence derived from alignment at scaffold_120:408216..411038+ (Clytia hemisphaerica)
gttatgagtATCTTTTTTGTGTGAAACATCAAAAGcaattttcttccatt
ttagTCAAGGAATATAAGAAAGGATTGAAGAGAGGGaggataaaaaaaga
ataaaattgaAAGCTGTTTTTAGACAGGACACGCGAACGAGAAGCATTTG
AACAGAAAGAACAGTAGAAGCAAACGATGgatgaaaactcaaaaagtacG
GATACCTATAACATCTATCAAAACATCAGGTAAATAAAAAACTCTAAGCC
CTTTCACAGTTTATGTTTTTTCTATGCTTATGTTGTGCCGATGATTGTAA
AATTAACTCCGGTCAAATCATTGCAAATTTAGTTTATTGATGTCCTAGGG
ACCGGtgaatacagttgacactctctaattcgatgttctactaccttatc
ggccctttttacacccgccctaatttaacgccggtcacttttacgccggc
ccttattacgccacagcccgattttgggcttacgccaattagggccgtaa
atagcTCCAAAATTTGTTAGAGTTGCTATTTATgcttcaatttacattaa
aatataatttttcagtagtaaactgttgaaaattccattgaaaaccacTG
ATCTTTGCAAAGTTTTAagtatggagtaaaacaatggataattttttatc
ttcgagtcattacctaaaatcctttaaatagagaaaaatgatcaaaagtt
aacgccacttttaagtaaaatttgcaaaatcttggccctttttacaccgg
cccttttaacgcGGACCCCTATTACGCCaagagcctaaaaataacgccaa
taagggccggcgtaaaaagggccgatgaGGTAATCGAGaacattgaaagt
caccgtcagcAAGAAACTATAAAAGACGCTCTATTATCATCATTAtccgc
caatttttttcccGTATAACGCCATAACGCCATAACGGCTGTAAACTCCG
CATgtatattttcccgcctttactatcacttcaacggacgataacatcgt
ctatacACTTCCACCAcatttgatgaaaatccaaGTCTCCTTGAAAATTG
AACTAGATTGTGTCAACAGTAGTTTCGTGTCTTGTGCCACACACCAGGCC
AAAATCTGATCCCTACCCAGAACAAATTCCATTCTACAATGTTCTACATT
TTCTTTTCCAAAACAGTCATTCTGCACATGCAAGATACACAGGGCAATGT
TTCACACCAATACAATGGACAGATGATACACATCACCGGCCTTCATACAA
CCTACACCGCATCTCAAGCATTTTCATTGGTATTCCTTTATTCATCATTG
GTATCATCACCGACATTGTATGTACCACGTTGTGGAAGCGGTTAATGAAC
CGTGCACGGAATAGAAATATCACATGCGGAATCTATCTAAACACCATTGC
TATCATAGATATCGGGACACTACTCGGATTTCTAACATGTGACATCCTCG
TGTATGCTAACCCAAACATCCTTCAGAATCACACTTATAACCAGTACTAC
GCCATCATTGGCTACCCGTCATACACTTTCTTCATGTTTCTCAATTTCTG
GTTAATAGCTGGCGTTGATGCTTGTCGCTTAACTATGGTCTTGTATCCGA
TCAAACTTCGACAATCCGAAACTAGAATCACCAATATCGCAATATCGCTC
ATCATAACCGTCATGTTTGCCGTTAATATACCGAATTTCTTCGCATACGG
CGCCTCATACACGGCGAATGGTATACCGTGCCGATGGCTTACCGCTCTTT
CTCTCACAGAATCTTTCAAGAATTATATTTTCGGATTCCAGTGTGTTTTC
TTAACTGTAGTACCATGGTTTGTAATACTTCTAGTCAACATTTCGATGAA
TATATACCAATCTACCGTCCCAGACTACATTccaaagtcaaaacaaaaag
cTGTCGAAATGGGCCAATTATTACGCGCCATGTCGATTTATTTTATAACT
ATCATCTTTTGTCAATGTTTGGTGCAGTGTTTCTTTTTAAGAACGCATCA
AACATCTGACCAATGGGAACGCGTGGACTCAGTATTCGCCTTTGCTAAAC
TTGGCGTTATTATATACTCTTCAactaaatttttccttttcgtaACCGTT
AGTAAAACATTCCGGAAAGCTTTTTTACATATGTTTTCAAACCCGAGAAC
AGTATACGCACTTGTAGTGGCACGCAAAGAAAGACATAATCGATCAAATA
AAGATAGAATAAGGAACACTTTGAAACACGCTTTTTCGGACGAAGCGTGA
ATGCAGTTGGTAGCTTACCTGTTAATAGTGTTCCAATGAAATACTTTACG
ACCACCGACCATTCAGAAACGTTCCCTGCTTCAAGTTATACTGTTCGAAA
CCTGCAAGAAAACATTAGAATTGAGCTCCATTCTTAAAAAGAGAAACGTT
TACCCTTCCGTAATCTCAGATTTTGCTCTTTATCATTTTTCAGAACAAGA
GAGGCGGTTATTTTCTAATTATCTCGCTTGTAGACTgcttatatatatat
aataattCTTACTCCCTCGTTAGAACTTCTGTGACGTTTCAAATCTCAGA
ctcaaaaataaaacacaaCCAACTGTAGGGAGAGGAGGTCGCCGGTACTA
AAATCTCTCACTTAGATGAGTACTAAAAGGGCTATGGAAAATTTTTCGGA
AGTGGTATATTTTAGTACCTATACAGAGACACAGAGACCACCCAATTTTG
GTATTCCCAGGATCCTTTTCCTCAAATTAAAGTGCTGCTTTTTGCAAAAA
CTTGATACTTTTAAGCAATGCTGCTTTATAAGATCGAACATCAAACAATC
ATTAAAGACATTTGActgaatgc Coding sequence (CDS) from alignment at scaffold_120:408216..411038+ >TCONS_00047010 ID=TCONS_00047010|Name=TCONS_00047010|organism=Clytia hemisphaerica|type=CDS|length=2274bp|location=Sequence derived from alignment at scaffold_120:408216..411038+ (Clytia hemisphaerica)
ATGgatgaaaactcaaaaagtacGGATACCTATAACATCTATCAAAACAT
CAGTCATTCTGCACATGCAAGATACACAGGGCAATGTTTCACACCAATAC
AATGGACAGATGATACACATCACCGGCCTTCATACAACCTACACCGCATC
TCAAGCATTTTCATTGGTATTCCTTTATTCATCATTGGTATCATCACCGA
CATTGTATGTACCACGTTGTGGAAGCGGTTAATGAACCGTGCACGGAATA
GAAATATCACATGCGGAATCTATCTAAACACCATTGCTATCATAGATATC
GGGACACTACTCGGATTTCTAACATGTGACATCCTCGTGTATGCTAACCC
AAACATCCTTCAGAATCACACTTATAACCAGTACTACGCCATCATTGGCT
ACCCGTCATACACTTTCTTCATGTTTCTCAATTTCTGGTTAATAGCTGGC
GTTGATGCTTGTCGCTTAACTATGGTCTTGTATCCGATCAAACTTCGACA
ATCCGAAACTAGAATCACCAATATCGCAATATCGCTCATCATAACCGTCA
TGTTTGCCGTTAATATACCGAATTTCTTCGCATACGGCGCCTCATACACG
GCGAATGGTATACCGTGCCGATGGCTTACCGCTCTTTCTCTCACAGAATC
TTTCAAGAATTATATTTTCGGATTCCAGTGTGTTTTCTTAACTGTAGTAC
CATGGTTTGTAATACTTCTAGTCAACATTTCGATGAATATATACCAATCT
ACCGTCCCAGACTACATTccaaagtcaaaacaaaaagcTGTCGAAATGGG
CCAATTATTACGCGCCATGTCGATTTATTTTATAACTATCATCTTTTGTC
AATGTTTGGTGCAGTGTTTCTTTTTAAGAACGCATCAAACATCTGACCAA
TGGGAACGCGTGGACTCAGTATTCGCCTTTGCTAAACTTGGCGTTATTAT
ATACTCTTCAactaaatttttccttttcgtaACCGTTAGTAAAACATTCC
GGAAAGCTTTTTTACATATGTTTTCAAACCCGAGAACAGTATACGCACTT
GTAGTGGCACGCAAAGAAAGACATAATCGATCAAATAAAGATAGAATAAG
GAACACTTTGAAACACGCTTTTTCGGACGAAGCGTGAATGgatgaaaact
caaaaagtacGGATACCTATAACATCTATCAAAACATCAGTCATTCTGCA
CATGCAAGATACACAGGGCAATGTTTCACACCAATACAATGGACAGATGA
TACACATCACCGGCCTTCATACAACCTACACCGCATCTCAAGCATTTTCA
TTGGTATTCCTTTATTCATCATTGGTATCATCACCGACATTGTATGTACC
ACGTTGTGGAAGCGGTTAATGAACCGTGCACGGAATAGAAATATCACATG
CGGAATCTATCTAAACACCATTGCTATCATAGATATCGGGACACTACTCG
GATTTCTAACATGTGACATCCTCGTGTATGCTAACCCAAACATCCTTCAG
AATCACACTTATAACCAGTACTACGCCATCATTGGCTACCCGTCATACAC
TTTCTTCATGTTTCTCAATTTCTGGTTAATAGCTGGCGTTGATGCTTGTC
GCTTAACTATGGTCTTGTATCCGATCAAACTTCGACAATCCGAAACTAGA
ATCACCAATATCGCAATATCGCTCATCATAACCGTCATGTTTGCCGTTAA
TATACCGAATTTCTTCGCATACGGCGCCTCATACACGGCGAATGGTATAC
CGTGCCGATGGCTTACCGCTCTTTCTCTCACAGAATCTTTCAAGAATTAT
ATTTTCGGATTCCAGTGTGTTTTCTTAACTGTAGTACCATGGTTTGTAAT
ACTTCTAGTCAACATTTCGATGAATATATACCAATCTACCGTCCCAGACT
ACATTccaaagtcaaaacaaaaagcTGTCGAAATGGGCCAATTATTACGC
GCCATGTCGATTTATTTTATAACTATCATCTTTTGTCAATGTTTGGTGCA
GTGTTTCTTTTTAAGAACGCATCAAACATCTGACCAATGGGAACGCGTGG
ACTCAGTATTCGCCTTTGCTAAACTTGGCGTTATTATATACTCTTCAact
aaatttttccttttcgtaACCGTTAGTAAAACATTCCGGAAAGCTTTTTT
ACATATGTTTTCAAACCCGAGAACAGTATACGCACTTGTAGTGGCACGCA
AAGAAAGACATAATCGATCAAATAAAGATAGAATAAGGAACACTTTGAAA
CACGCTTTTTCGGACGAAGCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047010-exon-scaffold_120-1491911889:408216..408444 | TCONS_00047010-exon-scaffold_120-1491911889:408216..408444 | Clytia hemisphaerica | exon |
| TCONS_00047010-exon-scaffold_120-1510915933:408216..408444 | TCONS_00047010-exon-scaffold_120-1510915933:408216..408444 | Clytia hemisphaerica | exon |
| TCONS_00047010-exon-scaffold_120-1575043694:408216..408444 | TCONS_00047010-exon-scaffold_120-1575043694:408216..408444 | Clytia hemisphaerica | exon |
| TCONS_00047010-exon-scaffold_120-1491911889:409382..411038 | TCONS_00047010-exon-scaffold_120-1491911889:409382..411038 | Clytia hemisphaerica | exon |
| TCONS_00047010-exon-scaffold_120-1510915933:409382..411038 | TCONS_00047010-exon-scaffold_120-1510915933:409382..411038 | Clytia hemisphaerica | exon |
| TCONS_00047010-exon-scaffold_120-1575043694:409382..411038 | TCONS_00047010-exon-scaffold_120-1575043694:409382..411038 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:408216..411038 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019424 | 7TM_GPCR_Srsx |
Blast
The following BLAST results are available for this feature:
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