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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047012 ID=TCONS_00047012|Name=TCONS_00047012|organism=Clytia hemisphaerica|type=transcript|length=2685bpRun BLAST on NCBI transcript from alignment at scaffold_120:9976..18097- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047012 ID=TCONS_00047012|Name=TCONS_00047012|organism=Clytia hemisphaerica|type=transcript|length=8122bp|location=Sequence derived from alignment at scaffold_120:9976..18097- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047012 vs. Swiss-Prot (Human)
Match: ITPR1 (Inositol 1,4,5-trisphosphate receptor type 1 OS=Homo sapiens GN=ITPR1 PE=1 SV=3) HSP 1 Score: 565.074 bits (1455), Expect = 3.202e-175 Identity = 342/621 (55.07%), Postives = 446/621 (71.82%), Query Frame = 3
Query: 12 DSEISPRDVGHNIYILAYQLSQHNTELSDLLKQDLEEGEDEAETAHADHQATFVQSDPALQFYSKSTAQIEVVRKDRVLEQIIYPVPSICEFLTDKKKDEVYYTCERDEHNSKVADFFERTEDLYKEMIWQKRLRDKPWLFWFSHNWQIWETXXXXXXXXXXXXXXFFYPFSN-DAMDLDHRLSILIWLAIFVSFIVCVTVPRLSGIRTLAGAVILRMIFTLGTIPTLNLIGAFNLLNRFVLTVSYIGNSGILSGTSFQRLISDKFLLMMVNCLIICGLGLFVHEFFYCVLVIDVIAREETLLXXXXXXXXXXXXIXXXXXXXXXXXXXFSIIGFLFFQEDFVMETEPLKVEALPN-AFCQANDTNCNSSALLPNILKKDGG--ASSPSSTEE----ESDGKVQENACDSLLMCIVFTMNNGLRSGGGIGDVLRAPSRGDRYFTARXXXXXXXXXXXXXXXXXXXXXXXXDTFADLRSEKQTKEEILKNSCFICGLKRADFDNRTVTFEQHINNEHNMWDYLYFIVLIKVKDPTEFTGPESYVAEMIKNNNLDWFPHLRCMSLSVDDAESEQNEIRNLQIQLESTNQIVHTLSKQLTELREQMIEQRKNKQKLGLLQLPAH 1850
D SPR+VGHNIYILA+QL++HN EL +LK + V D AL+FY+K TAQIE+VR DR +EQI++PVPSICEFLT + K +YYT ERDE SK+ DFF R+EDL+ EM WQK+LR +P L+W + N W +I+ NLA+++NLLVAFFYPF L+ S L+W A+ +S + + +P+ GIR L + ILR+IF++G PTL L+GAFN+ N+ + +S++GN G + ++ ++ D L + L+IC +GLFVHEFFY +L+ D++ REETLLNV++SVTRN RSI+LT +LAL+LVYLFSI+G+LFF++DF++E V+ LPN + S L ++ + + G SSP+ EE E + +E+ C++LLMCIV +++GLRSGGG+GDVLR PS+ + F ARVIYDLLFFF+VIIIVLNLIFGVIIDTFADLRSEKQ KEEILK +CFICGL+R FDN+TVTFE+HI EHNMW YL FIVL+KVKD TE+TGPESYVAEMIK NLDWFP +R MSL D+E EQNE+RNLQ +LEST ++V LS QL+EL++QM EQRK KQ++GLL P H
Sbjct: 2152 DGAASPRNVGHNIYILAHQLARHNKELQSMLKPGGQ-----------------VDGDEALEFYAKHTAQIEIVRLDRTMEQIVFPVPSICEFLTKESKLRIYYTTERDEQGSKINDFFLRSEDLFNEMNWQKKLRAQPVLYWCARNMSFWSSISFNLAVLMNLLVAFFYPFKGVRGGTLEPHWSGLLWTAMLISLAIVIALPKPHGIRALIASTILRLIFSVGLQPTLFLLGAFNVCNKIIFLMSFVGNCGTFT-RGYRAMVLDVEFLYHLLYLVICAMGLFVHEFFYSLLLFDLVYREETLLNVIKSVTRNGRSIILTAVLALILVYLFSIVGYLFFKDDFILE-----VDRLPNETAVPETGESLASEFLFSDVCRVESGENCSSPAPREELVPAEETEQDKEHTCETLLMCIVTVLSHGLRSGGGVGDVLRKPSKEEPLFAARVIYDLLFFFMVIIIVLNLIFGVIIDTFADLRSEKQKKEEILKTTCFICGLERDKFDNKTVTFEEHIKEEHNMWHYLCFIVLVKVKDSTEYTGPESYVAEMIKERNLDWFPRMRAMSLVSSDSEGEQNELRNLQEKLESTMKLVTNLSGQLSELKDQMTEQRKQKQRIGLLGHPPH 2749 The following BLAST results are available for this feature:
BLAST of TCONS_00047012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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