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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047054 ID=TCONS_00047054|Name=TCONS_00047054|organism=Clytia hemisphaerica|type=transcript|length=4052bpRun BLAST on NCBI transcript from alignment at scaffold_120:279256..316057- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047054 ID=TCONS_00047054|Name=TCONS_00047054|organism=Clytia hemisphaerica|type=transcript|length=36802bp|location=Sequence derived from alignment at scaffold_120:279256..316057- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047054 vs. Swiss-Prot (Human)
Match: NU205 (Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1 SV=3) HSP 1 Score: 860.136 bits (2221), Expect = 0.000e+0 Identity = 498/1341 (37.14%), Postives = 765/1341 (57.05%), Query Frame = 2
Query: 80 GGMWIPFKDILSIIETAIVHRKSEVYAELDEILTKHRAVFVNLLKNPGKNTAQREQVKKSSTVGLKLNEESNSITLKESTIHDVLLLSNALNLNEFSCVELILAAELQSPNFPGISDPAICALLYHDGRRSILAALKLLLTARPGVTWTLELDDRILELVTKFTENVISNGIVSVILNLMKDLSLPEELKKLEDAHALSDGKHKNMITELITEQQLLLGDCLFATACQHPLDKSDCEKLFNHLKLIAPNTADGSLDAVTMRVLFSLLANFNCDILDLAVENIEDTQYQQLPYFKDKNYFTSMHKTLLRPDDNLWQTSGIKEAIKFCWSIFLRTCSTHPDLSXXXXXXXXXXXXMSSVVANGVFHFLRKSVLESSKFYSEEYFVKIMHSFITSLIVKFPMKIKDWRNSGDENARIVEAHLFEGMEPPRGLSHDFKDFMDLISSLYKRDTHGLHLNCEYWIPPEPLG-----GAFSPHPVRKQQQALDQKKLMLNKFVRLAGDILMQTLYVSYLNMLASLSNNEQAATYCFRLLSRN--------ERTGNLSLSWDHFFNSLKQYYMSLRSTPDAPDHRLHMHRH---QEIXXXXXXXXXXXXXXIKCVAENNESVRIAFCENQSWLPVASLLGLVCCSIPPSLKGLLLETLAAFAKSPEVAVSLWHSLEAAQVLQTIETNGPKS--GIAVELLEIESRNEAYPQTLGFTKLVDILTDIAVPATLGAGSRIPGFHPYLTFLTENVFLTFKTRAYQDTREKWRVGSQVLKILLKILKEYNPQPDHFTERFVEVQGINLGKASKPSGFQLMLCLLNDTPVFRMLLSVIDDVAQQLERFVINEELKSSLEEIAGYCMAILEQVLEKQPVFLELSKHHMSSMIVSPLDELLLSVNPRTGRPDYLCMIARYMTYANIQASISLSVVKIIKLACEGLRVQKEIVELLAQNAVQSKELLVGFAEHLEVPDPELHENVEEFTMDENEEQSNEKQDLVRQNIVQLLTNTLNQPSVNIAQFLLGFDTRQSLARTNLQDPGVRGFPKTCLHSIITILNRGVSATCGPDARLLTPKLSESLYRLMYQLCAHQEIGGAVRRYLRTNTDFYMKHIQALPFLPTDGTELDLDEIQYIRLANQQSWFLKTVAIDLRVVATSRMRSALQQLLGALYSEQAAPDLLQGGGDVTQRTLEATQMTVGDSLSRTMLGSAFRFGSDEKXXXXXXXXXXXFTQRYPPNIELQFFDYGAVEQIITSCEELDEMGTPLCDVRKLYKVLMGEINNSQLVVGASQKQEILKEVKGVLKHAVDRNLVRESFHSKRNAFDAWRQVVEITFAVCPADMIPVDKKQAILMEILN 4048
+W P+KDI + A+ R+ E LD+IL KH+ F++L KNP KN Q E+V+K+ST G+ + + + L E I + +LS+ ++ E + VEL+LA E Q P+FPG++ + LLY DG+R I +LK L+ +R G TWTLEL + + T+FT+ ++ G+ +L L+ + + E +KL+ L KH+ +++LI E + L + LFA ACQ PL K D L HL+ + A+GSLDAV + +L +LL F+ ++ + E D QLP +K Y ++H L D LW+ G++ ++ W++ LR S PD++ E E DE + +A+ VF FL +SV+ S FY EE++++ +H+ IT + PMK+K RN DE+AR++ + G EPP L D + M LI LYK++ L L EYW P EPL G++ + Q Q++++L+KFVR GD+L T+Y+ YL ML L+N Q A YCF LL N + G +SW+HFF+SL Y+ LR D P +RH + I+ +E +GL + L L + +E+ R+A CE+ W PV +LGL+ CSIPP LK LL+TLAAF KSPE+A SLW SLE Q+LQT+ + GI VEL EIESR E YP T F +L+ L + + P+ LGAG R PGF PYL FL ++VFL F+TRAY+ EKW V VL++ K+L++Y PQ + F ++FVE+QG + A KP GF LM LLN++P+ + LS++++ +QL+ + K LE+ +C+A+L L+K+ +F++L + ++IV PL++LL +NPRT + D + IARY+ + N ++ KI+ +Q ++V + S++L+ GF E L+ D E +EE + E E++ + R +I+ LL +L N+A +LLGF+ ++ ++ TNLQDPGV G P+TCLH+I+ IL +G GP A +P+L+E Y+++YQLCA + G RYLRT+ DF +Q LPF E + I + NQ SW +KT +I+LRV + +R RS Q+LL L + G G + + D+ ++ + IL++L S+ F+Q P ++L FFD +EQ+I +CE + G +C+V+ L++VL+ E+N Q + Q+ +++E+ VL++ V RN + + H+KR+A ++WRQ+VEI CP D+I + +Q I+ +IL
Sbjct: 11 ASLWGPYKDIWHKVGNALWRRQPEAVHLLDKILKKHKPDFISLFKNPPKNVQQHEKVQKASTEGVAIQGQQGTRLLPEQLIKEAFILSDLFDIGELAAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKALIQSRRGKTWTLELSPELASMTTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRERGLGSEKHRKEVSDLIKECRQSLAESLFAWACQSPLGKEDTLLLIGHLERVTVE-ANGSLDAVNLALLMALLYCFDISFIEQSTEE-RDDMIHQLPLLTEKQYIATIHSRL--QDSQLWKLPGLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELAIADNVFLFLMESVVVSEYFYQEEFYIRRVHNLITDFLALMPMKVKQLRNRADEDARMIHMSMQMGNEPPISLRRDLEHLMLLIGELYKKNPFHLELALEYWCPTEPLQTPTIMGSY----LGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRK--DLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQCSIPPVLKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRIPSQRQAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEI-IAYKPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPG-KKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVCPLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDFTHDQSISQKLMAGFVECLDCEDAEEFVRLEEGS--ELEKKLVAIRHETRIHILNLLITSLECNPPNLALYLLGFELKKPVSTTNLQDPGVLGCPRTCLHAILNILEKGTEGRTGPVAVRESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQDFLFSQLQYLPF---SNKEYE------ISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGIEDENRSVSGFLHFDTATKV------------RRKILNILDSIDFSQEIPEPLQLDFFDRAQIEQVIANCEHKNLRGQTVCNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQ 1316 The following BLAST results are available for this feature:
BLAST of TCONS_00047054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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