|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047057 ID=TCONS_00047057|Name=TCONS_00047057|organism=Clytia hemisphaerica|type=transcript|length=4468bpRun BLAST on NCBI transcript from alignment at scaffold_120:326518..351314- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047057 ID=TCONS_00047057|Name=TCONS_00047057|organism=Clytia hemisphaerica|type=transcript|length=24797bp|location=Sequence derived from alignment at scaffold_120:326518..351314- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047057 vs. Swiss-Prot (Human)
Match: EFCB6 (EF-hand calcium-binding domain-containing protein 6 OS=Homo sapiens GN=EFCAB6 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.400e-26 Identity = 183/906 (20.20%), Postives = 361/906 (39.85%), Query Frame = 1
Query: 469 ELIERRLMSKIVQRLDEI--KRACHFSDVRGNGWIRIEHLRNILSVYCFDVDQLQFQRIMDRWGFKARNLIGYSQFLQKFNKIKTSGVF---------ALPYQDTHWYNPVRGDEIGIEDTPELFDN-LKKLIHSNHATLKTSFLKLDESRRGYIGWKEFRRVLNNLSITITEDQFTKLMKIIDPNKTGRVSYHQFLNLFEERETLDGHPWLKGSHI-----PHYAVPAPALDQPTVEKIIREKIQDNWTGFTKAFLQIDLNQDGLISKNELAELLQRYAIPMKKENFDQMWRKCDANSDGDVEFYEFMERLGVNIHASDLDGFSKRIHDEMEMKSQARKKHLKQIENLEHQRQDNCVSFKSVDEVLSFLKDFVIQRSSDFRQTFMKFDHNGDGKLSIAEFRRMLKQLKINLNVEDLKELLSRFKF--FNGKLTYTDFLTVFQDIKLCGKQDLIRIPNHRF-NQPIVGSELPXXXXXXXXXXXXXXNSELMFKTFKYADKSNNNSLSRTQFMNLVNTYIIPITREQMEKLFTYLGLPAFGSRINYMEFLNKF---------EDVEDFKKGHPWLFTKYTFNDSRPMNNVTAEKAFKMLAEKATDQWLSLAAAYRNFNRDFNGLIDEEELHGILKRFNIPIEGEEFQKLWKMFDTDGDGNIDNQEFLNKLGTE-----LAPGDHA----GLSTK-IAKGNTIALQMQQAYQRERVAAMLRNQKMSGKFIT----------AEQLKRRLRDKFRDGFESFKKAFRNIDKNMDGSVSKDEFVQVLNYFHYYIDEEELQKLMESVGLNLTNSISYTEFFE--VFGSGGKRSEXXXXXXXXXXXHGGDSENEELCNVLRKMISGSPEL------FEKAFETYDDENLGYITTEKLHILIKRTFMNLSKKQF 3015
E+IE+ K +Q+ D KR FS NG I + + +L +D Q+ + + GF+ + Y F F G + Y ++H+ I E+ +LF LK+ ++ +F K D R G I + R+L +L + + +D+F + + ++ + +++ +F NL E+R PW P V L + + K ++ W+ +K FL+ D +G++ + ++ L + IP+ F+++W + D G + + EF+++LG+N +S +H H + + L+ + ++ + E +D ++ R D + F K D + +SI + + +L++ +L +L LL+ + + + Y DFL ++ K G Q P + + PI + L +E +K ++ + + + F DK + + T+F ++ + +T Q L + IN+ FL F E E KG P K T + ++ A L + T + ++ + NF+ I EE I R + E+F +LW + G + +FL++ +E +A GD A G S +++G AL + Q R + ++ + T + ++ RLR + + + K + D G ++ +F+ ++ F+ I +EE Q+L+ L +Y +F + V K S L AH E + ++ P++ + F++YD+ G ++ ++++ +NLS+++F
Sbjct: 623 EVIEK--FKKCIQQQDPAFKKRFLDFSK-EPNGKINVHDFKKVLEDTGMPMDDDQYALLTTKIGFEKEGM-SYLDFAAGFEDPPMRGPETTPPQPPTPSKSYVNSHF--------ITAEECLKLFPRRLKESFRDPYS----AFFKTDADRDGIINMHDLHRLLLHLLLNLKDDEFERFLGLLGLRLSVTLNFREFQNLCEKR------PWRTDEAPQRLIRPKQKVADSELACEQAHQYLVTKAKNRWSDLSKNFLETDNEGNGILRRRDIKNALYGFDIPLTPREFEKLWARYDTEGKGHITYQEFLQKLGIN--------YSPAVHRPCAEDYFNFMGHFTKPQQLQEEMKE----LQQSTEKAVAARDKLMDRHQDISKAFTKTDQSKTNYISICKMQEVLEECGCSLTEGELTHLLNSWGVSRHDNAINYLDFLRAVENSKSTGAQ-----PKEKEESMPINFATLNPQEAVRKIQEVVESSQLALSTAFSALDKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLRKLRI-HLTPYINWKYFLQNFSCFLEETADEWAEKMPKGPPPTSPKATAD-----RDILAR-----LHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGDSAVAQRGSSVPDVSEGTRSALSL--PTQELRPGSKSQSHPCTPASTTVIPGTPPLQNCDPIESRLRKRIQGCWRQLLKECKEKDVARQGDINASDFLALVEKFNLDISKEECQQLIIKYDLKSNGKFAYCDFIQSCVLLLKAKESS-LMHRMKIQNAHKMKEAGAETPSFYSALLRIQPKIVHCWRPMRRTFKSYDEAGTGLLSVADFRTVLRQYSINLSEEEF 1475 HSP 2 Score: 98.5969 bits (244), Expect = 1.927e-20 Identity = 93/439 (21.18%), Postives = 174/439 (39.64%), Query Frame = 1
Query: 544 DVRGNGWIRIEHLRNILSVYCFDVDQLQFQRIMDRWGFKARNLIGYSQFLQKFNKIKTSGVFALPYQDTHWYNPVRGDEIGIEDTPELFDNLKKLIHSNHATLKTSFLKLDESRRGYIGWKEFRRVLNNLSITITEDQFTKLMKIIDPNKTGRVSYHQFLNLFEER------ETLDGHPWLKGSHIP-------------------------HYAVPA---------PALDQPTVEKIIREKIQDNWTGFTKAFLQIDLNQDGLISKNELAELLQRYAIPMKKENFDQMWRKCDANSDGDVEFYEFMERLGVNIHASDLDGFSKRIHDEMEMKSQARKKHLKQIENLEHQRQDNCVSFKSVDEVLSFLKDFVIQRSSDFRQTFMKFDHNGDGKLSIAEFRRMLKQLKINLNVEDLKELLSRF-KFFNGKLTYTDFLTVF 1737
D G+++ +L +C+ + Q+ + + I + FLQ F+ A + + P D ++ L K + S++ + F D + I +EFR + N +T++QF +L + N GR+ Y FL+ F T D +GS +P H PA P + +E +R++IQ W K + D+ + G I+ ++ L++++ + + KE Q+ K D S+G + +F++ + + A ++ H +I+N H+ ++ S L ++ ++ R+TF +D G G LS+A+FR +L+Q INL+ E+ +L + K + K++Y DFL F
Sbjct: 1082 DKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLRKLRIHLTPYINWKYFLQNFSCFLEET--ADEWAEKMPKGPPPTSPKATADR-DILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGDSAVAQRGSSVPDVSEGTRSALSLPTQELRPGSKSQSHPCTPASTTVIPGTPPLQNCDPIESRLRKRIQGCWRQLLKECKEKDVARQGDINASDFLALVEKFNLDISKEECQQLIIKYDLKSNGKFAYCDFIQSCVLLLKAK-----------------ESSLMHRMKIQN-AHKMKEAGAETPSFYSALLRIQPKIVHCWRPMRRTFKSYDEAGTGLLSVADFRTVLRQYSINLSEEEFFHILEYYDKTLSSKISYNDFLRAF 1499 HSP 3 Score: 97.8265 bits (242), Expect = 3.042e-20 Identity = 80/333 (24.02%), Postives = 140/333 (42.04%), Query Frame = 1
Query: 2062 FEDVEDFKKGHPWLFTKYTFNDSRPMNNVT-----AEKAFKMLAEKATDQWLSLAAAYRNFNRDFNGLIDEEELHGILKRFNIPIEGEEFQKLWKMFDTDGDGNIDNQEFLNKLGTELAPGDHAGLSTKIAK--GNTIALQMQQAYQRERVAAMLRNQKMSGKFITAEQLKRRLRDKFRDGFESFKKAFRNIDKNMDGSVSKDEFVQVLNYFHYYIDEEELQKLMESVGLNL-TNSISYTEFFEVFGSGGKRSEXXXXXXXXXXXHGGDSENEELCNVLRKMISGSPELFEKAFETYDDENLGYITTEKLHILIKRTFMNLSKKQFQAFLTKI 3036
F + ++ + PW + RP V E+A + L KA ++W L+ + + + NG++ ++ L F+IP+ EF+KLW +DT+G G+I QEFL KLG +P H + G+ Q Q +E Q+ + K + A RDK D + KAF D++ +S + +VL + E EL L+ S G++ N+I+Y +F + S + +E +++++ S AF D E+ G++ + ++K L+ Q+ FL K+
Sbjct: 799 FREFQNLCEKRPWRTDEAPQRLIRPKQKVADSELACEQAHQYLVTKAKNRWSDLSKNFLETDNEGNGILRRRDIKNALYGFDIPLTPREFEKLWARYDTEGKGHITYQEFLQKLGINYSPAVHRPCAEDYFNFMGHFTKPQQLQEEMKEL-------QQSTEKAVAA-------RDKLMDRHQDISKAFTKTDQSKTNYISICKMQEVLEECGCSLTEGELTHLLNSWGVSRHDNAINYLDFLRAVENSKSTGAQPKEKEESMPINFATLNPQEAVRKIQEVVESSQLALSTAFSALDKEDTGFVKATEFGQVLKDFCYKLTDNQYHYFLRKL 1117 The following BLAST results are available for this feature:
BLAST of TCONS_00047057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.