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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047069 ID=TCONS_00047069|Name=TCONS_00047069|organism=Clytia hemisphaerica|type=transcript|length=4433bp
ATTCAACCATATTTACATTCAACCATTATTACATAAAACCATATTTAGGA
ATAATCTTTAGGACAGCAACAAGGAAGTCCTTTTTCTTTTAACATCTGTA
TTGGAAGCTGTTTAGCTGTTCAAATAGAAAATAACGTACTGGACAATTTT
GACACTAGCTGTATAtacaatcaattttttttcctggATTGAATGATATT
ATCTTATCAAACTAATACTTTTTCAACAGTTTAAAAACGTTTTAGGAGAA
AAGGTTTTCTAAATTTCATTCTTTATTCCCTTTGAGTTTAAAAAACGCTT
TGGAAGTGGAGgttttctaaattattttctCGATTTACTTTAGGGGTTAG
TTTATTTTATAGCTAGGATAAGGGAAGTATATTGAGGAAGTTCTGAACTT
GGGATTCATTGTTCCGAGAATcagttgaaagtttttgatatcTTATATTG
CAAAATGTATTGTTTTGGGGTAAAATTCGAAAAAGAGGAACTTTAAAGGC
TACTATATATTATATACAAAGATTTATAGATTTATGAAAGATGAGAATTA
TCAATGAAATATATATAATTCTTTGTTCAAATTAATTATCAAATCCATGC
TTGTTTATTAAAGCTTTTTGAAGATCACTGTTAATTAATTTTCGTGAGTT
TTGCTAAAAgagcaatattttttttcgtgATTTGCTTTTTTGTTGTTGGC
TCTAAAAGAAGTAAAATTTTTTGGTCAGTATATAAATAAGGCTAGGTTGG
TTAGAGTCTAGGCTTAAATCTTTGAAAACTAACTTCTTTTTAATGATATT
atctagtcttgttttaaagaAAGACCAAGctagaacgataaactcggtat
gCATTCACTCACCCTCTGGATAAGGCTATCACTGtgtctcactaacattc
tgccgattggtagtgtgaaggtcacagacttgcaccgcgatggactgtgt
tcgaatctcAAGCACTTTCAGGCAGGATGTTGTTAGGGAAACATGGTGAT
GTCTCTACTTTCACTTTAAGACCAAGCTTCTTTGCTCGAAGTTTTGGGTA
GGGCTTAAACAGACCATATTCTAACCAGACATCCTCCTTTATATGACCTT
TTACGAtaaataaaaccttttttttcgGATTTGCGATAATACTAACTGat
acaagtgaaaaaaaaaaattaaaagcaaaGTTGCAACAAGAAcctttcaa
aatgaaatttatacCAAAGATAGATTTATTATCCAAAGCTtcatttcgaa
attttcaaggTTGAGGTCAGTGAGGTTTTTCAAGAGAAAATACCCTTTTT
TGGCTAAAGAGAATCTTTCACAATGTTTCACAATAGAGATGCTGTAAATC
TCATCTTTATAATCTTCGCACGTTTTCGAAAATATATATTATTCGGTTTT
AAATGtactttaaaaatttgaaattacaaaTAACATCAAGATATGGGGAG
TAATGGATATGGGATAGGTTAGCAGGAGGATTTCATTTATTGAGTTTCGC
TTCTTTTTAACACCTCCGATATTTTTGTTGTATCATTTCGTATTTTTCAC
AATGACTTATTCTGAATTGACGTAAAAGAAACCTTGTTGATTTTAGCAGA
TATGGAAAAGAGacgaaaataaaagttaagGTCAAAAGTTGTAGTATAGT
GTAGTGTAGGTAAATTATTCTTCATGCGCATACAGTGGTAAAGTCGATAG
TTTGAATGATAATTGGTAGTAGGTCTCAATAAGAGGAGAATTATGGTGCC
GTTTTCTGGGTCTGAGGCCCCGAGTTATTGCATTGATGTCACTATTTCTT
GGGTAGAgccctcaaaattttgatataaattgaCATCCTAGTCTCTTACA
GTAACAACATCAATCAATTAATTGACTTTGCCTTTAACCTTACACACTTT
AGTTTGTTTGTAATCTAATTTGTAATCTTGTAAAAAACAAATAGCTACTA
GGCTAATACAAGTCAACCTATTTACAACATTGTATGGAGATCTTAAATCT
TAAATGCAGTTGTAGAAGGTTATAGGGTTCCTTACTATGCAACTCAAAAA
ATACTGATGTTCATCTTGTCTAATTTTTAGATATTCTATTCAAAGAAACG
ATAAAAAGTTCGACTTTTCCCAATGAAACCCGTGTTCGTTTTGGTCATAA
AAGAAACTAATGAATatagttttgtttttatatttttagatgGGTACAGA
ATGGAAACTAGATAGTCAATTACGTGCCAGTTTGGAGCGCATCGAAAAAA
TCGTCTTCAAGCTACAAGACAGTGAAAATGGAGTTCCCATCACCAACGCT
AAAGCTTTGTTTCACACCATACCTAACGTCTGTACTGGCGCTGATATCGT
CACTTGGCTTAAGAATGACCTTGAGTTGAAAACACGTGCCGAGGCTTTGA
ATGTCGCTCGTACTATTGCCAAATATGGTTACATCTTTGTAGCCAGTGAC
AGTAAACTTACCGTCAAAGATGATTTAACACACCACCGATTTCAACACGA
GTTTTTCTGGCCAACTAAAGAAAGAGCTATATCGAATTCTGATTATGCTG
TCCATCTATGTAAACGTCTGTTTTCCAATAAAAATCGATCAAACCTTGAA
GTTTACGAGATGGATCAATTCACACGCTTGCAACGTCATTTAGGTCATAA
ATGGGAACACATTTGGGTACAAGCTGAAGCAAGTTATAAAGTTGATAAGA
AAAAGTCTAAAGCCGAGCAATACGTCATTGAAAGCCAAGAAAGAGCTTTT
TGGAATTTACACAAACCGCCACCCTATTCTGATTATGTTTTAGCTGCTGA
TCCtttgaagtttaaaaagaaTGCAACAACCGAGGCTATTACTCCGCTTT
CTCCCGATCGCGCCGCCTCAACGCCTTCCATTTTGAGGCGCCATTCAGTT
GATTCTTTAAGAGATGACGCCATGAAGCTTGGAACCGCCCTTCAAAAAGC
AGAAGCACCAAAAGCTGTTGAAAGTTTGATATCTTATTGTATGCAGTACA
ATAAATTCGACCCTTTACTCCGACAACCGAGTACTACCTCGAGTAACTCG
GCTTTTTACACGGAAGAGTCGAACAACTCGAATGATGCTTCCAGACGTGG
ATCACAACAGGTGGAACGCTGGGCGATATCATTGGAGGAGCTATTACGTG
ATAAGGAAGGGGTACTCgtctttttaaaacatttagaaaaagaaCACAGC
TCTGAGAATTTACGTTTTTGGTTAGCTTGTGAAGAATACAAGGCGTGCCC
TTTAAAGAAAGTTCCTGAAAAAGCTgaacaaatttataaagaatATCTAT
CTCGTTCTGCATTTTATCAAGTGAATTTAGACAGTAAACTTATGGTTGAT
GTCGAAGAGGGTATGAAAAACCCGAACCATTTTACCTTTCGGGCTGCCCA
ACATGAAATCTTTCGTCTCATGCGATCAGACAGCTATCCGCGTTTCTTGA
AATCCGAAAATTTTGTCATGTTATCGAAAGAAGCGAATTCACCGAGTCAT
AAAGGACAAGAGAAGAAAGGAATTTTATCCATTTTGACGAGTCCTCAACA
TAAAGTATAGATGTGGGttatttgtgtgttttttttttgtcaaactcGTT
CATTTTTGTTTGTCTATCTTCGTATGGAAATCTGCTGGTGATTTTTTATA
TAGTGTATGACGTATTTTGTGTTAGATTATTTTTTAGAGATAATATACTT
GCTATGATTTTTATTACAATCGGTTGTATCTACCATTTAATTGATTTCTC
TTTCAAATTATACCTCAACCTATTTGACAGCTTTTTATAACTGGCCATGG
TCGCGAGTTTTCCGATATACCTGTTTTGAACCATAATTCGTTTTGTGCAG
TTCCGTTTTAGGAAAAATAAGTCTTTGTTTAGCATAATTTTCCATCCCCC
CTTATTCCTCCTTCAAGCCTTGGTTCCTTTCCCCGGCCAGCTAAGTgaat
actttttgacttttcgacGATCGTGTAATTGAGGATAAAATCAAACCTCA
TGTTGTATAGATTAGCTTTATCTAGTACATTTATTGCTGACAAAATTTTT
ATCGCGTtcattttttgtacataattatTTGTAGCTCTTAGACAATACTT
TCCTTTCTTCGCTGCAAAGATTCATGAAGCGTCCCTTTCAACCAATAACG
AAAATTGGTTATTTGGGAAAACGAACACtttggtttaactcactaaagaA
TTTTGTTTACTGAGCACACAAGATTAATCTTTCGTAAGTTAAACCATGAT
GCTCTGTTTTTACCCAATtctgacgtcatgccgtggcaaaaaatctttga
aacaaGTAGCAGAATTTTTTGACATCTTTTCTGTcgataaatttttaaaa
ctcgTTGTCCTTTGAACAGATTAAACTTCAAGGTCTTTTAAATCACGTCT
TTTTCTTAGctaagaaaataattttacctCAAG Run BLAST on NCBI transcript from alignment at scaffold_120:362341..366773- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047069 ID=TCONS_00047069|Name=TCONS_00047069|organism=Clytia hemisphaerica|type=transcript|length=4433bp|location=Sequence derived from alignment at scaffold_120:362341..366773- (Clytia hemisphaerica)
ATTCAACCATATTTACATTCAACCATTATTACATAAAACCATATTTAGGA
ATAATCTTTAGGACAGCAACAAGGAAGTCCTTTTTCTTTTAACATCTGTA
TTGGAAGCTGTTTAGCTGTTCAAATAGAAAATAACGTACTGGACAATTTT
GACACTAGCTGTATATACAATCAATTTTTTTTCCTGGATTGAATGATATT
ATCTTATCAAACTAATACTTTTTCAACAGTTTAAAAACGTTTTAGGAGAA
AAGGTTTTCTAAATTTCATTCTTTATTCCCTTTGAGTTTAAAAAACGCTT
TGGAAGTGGAGGTTTTCTAAATTATTTTCTCGATTTACTTTAGGGGTTAG
TTTATTTTATAGCTAGGATAAGGGAAGTATATTGAGGAAGTTCTGAACTT
GGGATTCATTGTTCCGAGAATCAGTTGAAAGTTTTTGATATCTTATATTG
CAAAATGTATTGTTTTGGGGTAAAATTCGAAAAAGAGGAACTTTAAAGGC
TACTATATATTATATACAAAGATTTATAGATTTATGAAAGATGAGAATTA
TCAATGAAATATATATAATTCTTTGTTCAAATTAATTATCAAATCCATGC
TTGTTTATTAAAGCTTTTTGAAGATCACTGTTAATTAATTTTCGTGAGTT
TTGCTAAAAGAGCAATATTTTTTTTCGTGATTTGCTTTTTTGTTGTTGGC
TCTAAAAGAAGTAAAATTTTTTGGTCAGTATATAAATAAGGCTAGGTTGG
TTAGAGTCTAGGCTTAAATCTTTGAAAACTAACTTCTTTTTAATGATATT
ATCTAGTCTTGTTTTAAAGAAAGACCAAGCTAGAACGATAAACTCGGTAT
GCATTCACTCACCCTCTGGATAAGGCTATCACTGTGTCTCACTAACATTC
TGCCGATTGGTAGTGTGAAGGTCACAGACTTGCACCGCGATGGACTGTGT
TCGAATCTCAAGCACTTTCAGGCAGGATGTTGTTAGGGAAACATGGTGAT
GTCTCTACTTTCACTTTAAGACCAAGCTTCTTTGCTCGAAGTTTTGGGTA
GGGCTTAAACAGACCATATTCTAACCAGACATCCTCCTTTATATGACCTT
TTACGATAAATAAAACCTTTTTTTTCGGATTTGCGATAATACTAACTGAT
ACAAGTGAAAAAAAAAAATTAAAAGCAAAGTTGCAACAAGAACCTTTCAA
AATGAAATTTATACCAAAGATAGATTTATTATCCAAAGCTTCATTTCGAA
ATTTTCAAGGTTGAGGTCAGTGAGGTTTTTCAAGAGAAAATACCCTTTTT
TGGCTAAAGAGAATCTTTCACAATGTTTCACAATAGAGATGCTGTAAATC
TCATCTTTATAATCTTCGCACGTTTTCGAAAATATATATTATTCGGTTTT
AAATGTACTTTAAAAATTTGAAATTACAAATAACATCAAGATATGGGGAG
TAATGGATATGGGATAGGTTAGCAGGAGGATTTCATTTATTGAGTTTCGC
TTCTTTTTAACACCTCCGATATTTTTGTTGTATCATTTCGTATTTTTCAC
AATGACTTATTCTGAATTGACGTAAAAGAAACCTTGTTGATTTTAGCAGA
TATGGAAAAGAGACGAAAATAAAAGTTAAGGTCAAAAGTTGTAGTATAGT
GTAGTGTAGGTAAATTATTCTTCATGCGCATACAGTGGTAAAGTCGATAG
TTTGAATGATAATTGGTAGTAGGTCTCAATAAGAGGAGAATTATGGTGCC
GTTTTCTGGGTCTGAGGCCCCGAGTTATTGCATTGATGTCACTATTTCTT
GGGTAGAGCCCTCAAAATTTTGATATAAATTGACATCCTAGTCTCTTACA
GTAACAACATCAATCAATTAATTGACTTTGCCTTTAACCTTACACACTTT
AGTTTGTTTGTAATCTAATTTGTAATCTTGTAAAAAACAAATAGCTACTA
GGCTAATACAAGTCAACCTATTTACAACATTGTATGGAGATCTTAAATCT
TAAATGCAGTTGTAGAAGGTTATAGGGTTCCTTACTATGCAACTCAAAAA
ATACTGATGTTCATCTTGTCTAATTTTTAGATATTCTATTCAAAGAAACG
ATAAAAAGTTCGACTTTTCCCAATGAAACCCGTGTTCGTTTTGGTCATAA
AAGAAACTAATGAATATAGTTTTGTTTTTATATTTTTAGATGGGTACAGA
ATGGAAACTAGATAGTCAATTACGTGCCAGTTTGGAGCGCATCGAAAAAA
TCGTCTTCAAGCTACAAGACAGTGAAAATGGAGTTCCCATCACCAACGCT
AAAGCTTTGTTTCACACCATACCTAACGTCTGTACTGGCGCTGATATCGT
CACTTGGCTTAAGAATGACCTTGAGTTGAAAACACGTGCCGAGGCTTTGA
ATGTCGCTCGTACTATTGCCAAATATGGTTACATCTTTGTAGCCAGTGAC
AGTAAACTTACCGTCAAAGATGATTTAACACACCACCGATTTCAACACGA
GTTTTTCTGGCCAACTAAAGAAAGAGCTATATCGAATTCTGATTATGCTG
TCCATCTATGTAAACGTCTGTTTTCCAATAAAAATCGATCAAACCTTGAA
GTTTACGAGATGGATCAATTCACACGCTTGCAACGTCATTTAGGTCATAA
ATGGGAACACATTTGGGTACAAGCTGAAGCAAGTTATAAAGTTGATAAGA
AAAAGTCTAAAGCCGAGCAATACGTCATTGAAAGCCAAGAAAGAGCTTTT
TGGAATTTACACAAACCGCCACCCTATTCTGATTATGTTTTAGCTGCTGA
TCCTTTGAAGTTTAAAAAGAATGCAACAACCGAGGCTATTACTCCGCTTT
CTCCCGATCGCGCCGCCTCAACGCCTTCCATTTTGAGGCGCCATTCAGTT
GATTCTTTAAGAGATGACGCCATGAAGCTTGGAACCGCCCTTCAAAAAGC
AGAAGCACCAAAAGCTGTTGAAAGTTTGATATCTTATTGTATGCAGTACA
ATAAATTCGACCCTTTACTCCGACAACCGAGTACTACCTCGAGTAACTCG
GCTTTTTACACGGAAGAGTCGAACAACTCGAATGATGCTTCCAGACGTGG
ATCACAACAGGTGGAACGCTGGGCGATATCATTGGAGGAGCTATTACGTG
ATAAGGAAGGGGTACTCGTCTTTTTAAAACATTTAGAAAAAGAACACAGC
TCTGAGAATTTACGTTTTTGGTTAGCTTGTGAAGAATACAAGGCGTGCCC
TTTAAAGAAAGTTCCTGAAAAAGCTGAACAAATTTATAAAGAATATCTAT
CTCGTTCTGCATTTTATCAAGTGAATTTAGACAGTAAACTTATGGTTGAT
GTCGAAGAGGGTATGAAAAACCCGAACCATTTTACCTTTCGGGCTGCCCA
ACATGAAATCTTTCGTCTCATGCGATCAGACAGCTATCCGCGTTTCTTGA
AATCCGAAAATTTTGTCATGTTATCGAAAGAAGCGAATTCACCGAGTCAT
AAAGGACAAGAGAAGAAAGGAATTTTATCCATTTTGACGAGTCCTCAACA
TAAAGTATAGATGTGGGTTATTTGTGTGTTTTTTTTTTGTCAAACTCGTT
CATTTTTGTTTGTCTATCTTCGTATGGAAATCTGCTGGTGATTTTTTATA
TAGTGTATGACGTATTTTGTGTTAGATTATTTTTTAGAGATAATATACTT
GCTATGATTTTTATTACAATCGGTTGTATCTACCATTTAATTGATTTCTC
TTTCAAATTATACCTCAACCTATTTGACAGCTTTTTATAACTGGCCATGG
TCGCGAGTTTTCCGATATACCTGTTTTGAACCATAATTCGTTTTGTGCAG
TTCCGTTTTAGGAAAAATAAGTCTTTGTTTAGCATAATTTTCCATCCCCC
CTTATTCCTCCTTCAAGCCTTGGTTCCTTTCCCCGGCCAGCTAAGTGAAT
ACTTTTTGACTTTTCGACGATCGTGTAATTGAGGATAAAATCAAACCTCA
TGTTGTATAGATTAGCTTTATCTAGTACATTTATTGCTGACAAAATTTTT
ATCGCGTTCATTTTTTGTACATAATTATTTGTAGCTCTTAGACAATACTT
TCCTTTCTTCGCTGCAAAGATTCATGAAGCGTCCCTTTCAACCAATAACG
AAAATTGGTTATTTGGGAAAACGAACACTTTGGTTTAACTCACTAAAGAA
TTTTGTTTACTGAGCACACAAGATTAATCTTTCGTAAGTTAAACCATGAT
GCTCTGTTTTTACCCAATTCTGACGTCATGCCGTGGCAAAAAATCTTTGA
AACAAGTAGCAGAATTTTTTGACATCTTTTCTGTCGATAAATTTTTAAAA
CTCGTTGTCCTTTGAACAGATTAAACTTCAAGGTCTTTTAAATCACGTCT
TTTTCTTAGCTAAGAAAATAATTTTACCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00047069-exon-scaffold_120-1575043694:362341..366773 | TCONS_00047069-exon-scaffold_120-1575043694:362341..366773 | Clytia hemisphaerica | exon |
| TCONS_00047069-exon-scaffold_120-1510915933:362341..366773 | TCONS_00047069-exon-scaffold_120-1510915933:362341..366773 | Clytia hemisphaerica | exon |
| TCONS_00047069-exon-scaffold_120-1491911889:362341..366773 | TCONS_00047069-exon-scaffold_120-1491911889:362341..366773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:362341..366773 - |
Blast
BLAST of TCONS_00047069 vs. Swiss-Prot (Human)
Match: RGS6 (Regulator of G-protein signaling 6 OS=Homo sapiens GN=RGS6 PE=1 SV=5) HSP 1 Score: 298.901 bits (764), Expect = 1.268e-88 Identity = 177/451 (39.25%), Postives = 258/451 (57.21%), Query Frame = 3
Query: 2238 RIEKIVFKLQDSE-NGVPITNAKALFHTIPNVCTGADIVTWLKNDLELKTRAEALNVARTIAKYGYIFVASDSKLTVKDDLTHHRFQHEFFWPTKERAISNSDYAVHLCKRLFSNKNRSNLEVYEMDQFTRLQRHLGHKWEHIWVQAEASYKVDKKKSKAEQYVIESQERAFWNLHKPPPYSDYVLAAD---------PLKFKKN--ATTEAITPLSPDRAASTPSILRRHSVDSLRDDAMKLGTALQK--AEAPKAVESLISYCMQYNKFDPLLR--QPST--TSSNSAFYTEESNNSNDASRRGSQQ-VERWAISLEELLRDKEGVLVFLKHLEKEHSSENLRFWLACEEYKACPLKKVPEKAEQIYKEYLSRSAFYQVNLDSKLMVDVEEGMKNPNHFTFRAAQHEIFRLMRSDSYPRFLKSENF--VMLSKEANSPSHKGQEKKGIL 3527
+IE I+ K+QD + GVPI K+ IP+V TG DIV WL +L ++ EA+++ IA GYIF SD LT+KDD T +RFQ +FWP+ N+DYA++LCKR NK R L YE + RLQR KWE I++QAEA K+D+KK K E+ +++SQERAFW++H+P P D P K KK+ TE SP S P +R+ + + +R L + + + K ESLI+Y QY ++DPL+ +PS S + A + E S+ SQQ V+RW S +E+L+D+ G FL+ LE E SSENLRFWLA ++ K PL+ V ++ E+I++E+L+ A +NLDS + +K+ +TF AQ I++LM+SDSY RFL+S + ++L+K+ S G+ G++
Sbjct: 28 KIEDIITKMQDDKTGGVPIRTVKSFLSKIPSVVTGTDIVQWLMKNLSIEDPVEAIHLGSLIAAQGYIFPISDHVLTMKDDGTFYRFQAPYFWPSNCWEPENTDYAIYLCKRTMQNKARLELADYEAENLARLQRAFARKWEFIFMQAEAQVKIDRKKDKTERKILDSQERAFWDVHRPVPGCVNTTEMDIRKCRRLKNPQKVKKSVYGVTEESQAQSPVHVLSQP--IRKTTKEDIRKQITFLNAQIDRHCLKMSKVAESLIAYTEQYVEYDPLITPAEPSNPWISDDVALWDIE------MSKEPSQQRVKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQDVAKRVEEIWQEFLAPGAPSAINLDSHSYEITSQNVKDGGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLLLAKKKGK-SLAGKRLTGLM 469
The following BLAST results are available for this feature:
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