|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047072 ID=TCONS_00047072|Name=TCONS_00047072|organism=Clytia hemisphaerica|type=transcript|length=897bp
NATTGAAATGCCTGACGATCAGTTGTTAGCAGACTGGATTCGAAATTATC
AAGGGTAATAGacTCTTCGCAGAAACAACTGCTACCTGCAATCAAATATA
TTTGCAAATTATCGATTTTTCTTCTGGATCACAACCACTCTCACAATCGg
aaattgatcaaaatttgaaagtagATGAGGAAAAAGAAGCAACAAAGTTC
TTCATTGAAAGAGAAGAATATCTCATGGGAATTGTCGATAAAACCACCGA
AAGGATGATCAATGCTTTAACAGAGACAGTCAATGAAATGTGCAAAGGAT
GCCAAGAAGAAGGTGGAGCACAAAAACATCATGTCTATTATCAATACGAC
GATGAAACTGTTTGAACACATGTGGAATGAGATGGATATCGAGGAATTCA
ACAAGCAATCAACGACAAAGTTTAAGTAAGAGACATCTTCAAAACAAGGA
ACAATTTTCAAGAGATAAAAATTGGtttgaatatttgaaagaaaattttt
ttatacatTATTTTAGAATAACAGAATAAATACAAATAAATGAGCGTATA
CAATAAATTGAACATTTACTGCTAAAAACTACCATGTCctgggaaatatt
ttaacaaaaaatgtcCTATCTTTTGATCATTTGCAGAAAAGTCAgttcta
tcaattttttttacaatgtcAGACAATCTTTTACCACGGCACAATTGAGT
AGCAAAATAAATGACATATCCACCGCAAACTTTCGAGAATAATGAATGCA
GTTGAACAGGGTTTCTTTCGATTTCAGTCTGCGGTTTATCAAATGTGGAA
ACGCCGGAGGCGTTCCTCGCCCAGCGATTTCAGTTAATgatgtgaattgg
aagaaaaaatgaggattagttggtcTCAAAGAGGGATTCGGTAATCT Run BLAST on NCBI transcript from alignment at scaffold_120:399361..400406- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047072 ID=TCONS_00047072|Name=TCONS_00047072|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at scaffold_120:399361..400406- (Clytia hemisphaerica)
NATTGAAATGCCTGACGATCAGTTGTTAGCAGACTGGATTCGAAATTATC
AAGGGTAATAGGTATGTTTTTCACACTTATTTCTTGATACTACATCTATC
TCAATCTAAAATATGTATGGGTCTTTTTTCAATAAAAGCTGATGAATAAT
GTAGCGCAAGAAAAGTAGCATATATTATAGAAATCATTGAAAACTACTTT
TTTATTTAAGACTCTTCGCAGAAACAACTGCTACCTGCAATCAAATATAT
TTGCAAATTATCGATTTTTCTTCTGGATCACAACCACTCTCACAATCGGA
AATTGATCAAAATTTGAAAGTAGATGAGGAAAAAGAAGCAACAAAGTTCT
TCATTGAAAGAGAAGAATATCTCATGGGAATTGTCGATAAAACCACCGAA
AGGATGATCAATGCTTTAACAGAGACAGTCAATGAAATGTGCAAAGGATG
CCAAGAAGAAGGTGGAGCACAAAAACATCATGTCTATTATCAATACGACG
ATGAAACTGTTTGAACACATGTGGAATGAGATGGATATCGAGGAATTCAA
CAAGCAATCAACGACAAAGTTTAAGTAAGAGACATCTTCAAAACAAGGAA
CAATTTTCAAGAGATAAAAATTGGTTTGAATATTTGAAAGAAAATTTTTT
TATACATTATTTTAGAATAACAGAATAAATACAAATAAATGAGCGTATAC
AATAAATTGAACATTTACTGCTAAAAACTACCATGTCCTGGGAAATATTT
TAACAAAAAATGTCCTATCTTTTGATCATTTGCAGAAAAGTCAGTTCTAT
CAATTTTTTTTACAATGTCAGACAATCTTTTACCACGGCACAATTGAGTA
GCAAAATAAATGACATATCCACCGCAAACTTTCGAGAATAATGAATGCAG
TTGAACAGGGTTTCTTTCGATTTCAGTCTGCGGTTTATCAAATGTGGAAA
CGCCGGAGGCGTTCCTCGCCCAGCGATTTCAGTTAATGATGTGAATTGGA
AGAAAAAATGAGGATTAGTTGGTCTCAAAGAGGGATTCGGTAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047072-exon-scaffold_120-1575043694:400346..400406 | TCONS_00047072-exon-scaffold_120-1575043694:400346..400406 | Clytia hemisphaerica | exon |
| TCONS_00047072-exon-scaffold_120-1575043694:399361..400196 | TCONS_00047072-exon-scaffold_120-1575043694:399361..400196 | Clytia hemisphaerica | exon |
| TCONS_00047072-exon-scaffold_120-1510915933:400346..400406 | TCONS_00047072-exon-scaffold_120-1510915933:400346..400406 | Clytia hemisphaerica | exon |
| TCONS_00047072-exon-scaffold_120-1510915933:399361..400196 | TCONS_00047072-exon-scaffold_120-1510915933:399361..400196 | Clytia hemisphaerica | exon |
| TCONS_00047072-exon-scaffold_120-1491911889:400346..400406 | TCONS_00047072-exon-scaffold_120-1491911889:400346..400406 | Clytia hemisphaerica | exon |
| TCONS_00047072-exon-scaffold_120-1491911889:399361..400196 | TCONS_00047072-exon-scaffold_120-1491911889:399361..400196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:399361..400406 - |
Blast
The following BLAST results are available for this feature:
|
