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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047073 ID=TCONS_00047073|Name=TCONS_00047073|organism=Clytia hemisphaerica|type=transcript|length=545bp
NATTGAAATGCCTGACGATCAGTTGTTAGCAGACTGGATTCGAAATTATC
AAGGGTAATAGacTCTTCGCAGAAACAACTGCTACCTGCAATCAAATATA
TTTGCAAATTATCGATTTTTCTTCTGGATCACAACCACTCTCACAATCGg
aaattgatcaaaatttgaaagtagATGAGGAAAAAGAAGCAACAAAGTTC
TTCATTGAAAGAGAAGAATATCTCATGGGAATTGTCGATAAAACCACCGA
AAGGATGATCAATGCTTTAACAGAGACAGTCAATGAAATGTGCAAAGGAT
GCCAAGAAGAAGGTGGAGCACAAAAACATCATGTCTATTATCAATACGAC
GATGAAACTGTTTGAACACATGTGGAATGAGATGGATATCGAGGAATTCA
ACAAGCAATCAACGACAAAGTTTAATCTGCGGTTTATCAAATGTGGAAAC
GCCGGAGGCGTTCCTCGCCCAGCGATTTCAGTTAATgatgtgaattggaa
gaaaaaatgaggattagttggtcTCAAAGAGGGATTCGGTAATCT Run BLAST on NCBI transcript from alignment at scaffold_120:399361..400406- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047073 ID=TCONS_00047073|Name=TCONS_00047073|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at scaffold_120:399361..400406- (Clytia hemisphaerica)
NATTGAAATGCCTGACGATCAGTTGTTAGCAGACTGGATTCGAAATTATC
AAGGGTAATAGGTATGTTTTTCACACTTATTTCTTGATACTACATCTATC
TCAATCTAAAATATGTATGGGTCTTTTTTCAATAAAAGCTGATGAATAAT
GTAGCGCAAGAAAAGTAGCATATATTATAGAAATCATTGAAAACTACTTT
TTTATTTAAGACTCTTCGCAGAAACAACTGCTACCTGCAATCAAATATAT
TTGCAAATTATCGATTTTTCTTCTGGATCACAACCACTCTCACAATCGGA
AATTGATCAAAATTTGAAAGTAGATGAGGAAAAAGAAGCAACAAAGTTCT
TCATTGAAAGAGAAGAATATCTCATGGGAATTGTCGATAAAACCACCGAA
AGGATGATCAATGCTTTAACAGAGACAGTCAATGAAATGTGCAAAGGATG
CCAAGAAGAAGGTGGAGCACAAAAACATCATGTCTATTATCAATACGACG
ATGAAACTGTTTGAACACATGTGGAATGAGATGGATATCGAGGAATTCAA
CAAGCAATCAACGACAAAGTTTAAGTAAGAGACATCTTCAAAACAAGGAA
CAATTTTCAAGAGATAAAAATTGGTTTGAATATTTGAAAGAAAATTTTTT
TATACATTATTTTAGAATAACAGAATAAATACAAATAAATGAGCGTATAC
AATAAATTGAACATTTACTGCTAAAAACTACCATGTCCTGGGAAATATTT
TAACAAAAAATGTCCTATCTTTTGATCATTTGCAGAAAAGTCAGTTCTAT
CAATTTTTTTTACAATGTCAGACAATCTTTTACCACGGCACAATTGAGTA
GCAAAATAAATGACATATCCACCGCAAACTTTCGAGAATAATGAATGCAG
TTGAACAGGGTTTCTTTCGATTTCAGTCTGCGGTTTATCAAATGTGGAAA
CGCCGGAGGCGTTCCTCGCCCAGCGATTTCAGTTAATGATGTGAATTGGA
AGAAAAAATGAGGATTAGTTGGTCTCAAAGAGGGATTCGGTAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047073-exon-scaffold_120-1575043694:400346..400406 | TCONS_00047073-exon-scaffold_120-1575043694:400346..400406 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1575043694:399833..400196 | TCONS_00047073-exon-scaffold_120-1575043694:399833..400196 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1575043694:399361..399480 | TCONS_00047073-exon-scaffold_120-1575043694:399361..399480 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1510915933:400346..400406 | TCONS_00047073-exon-scaffold_120-1510915933:400346..400406 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1510915933:399833..400196 | TCONS_00047073-exon-scaffold_120-1510915933:399833..400196 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1510915933:399361..399480 | TCONS_00047073-exon-scaffold_120-1510915933:399361..399480 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1491911889:400346..400406 | TCONS_00047073-exon-scaffold_120-1491911889:400346..400406 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1491911889:399833..400196 | TCONS_00047073-exon-scaffold_120-1491911889:399833..400196 | Clytia hemisphaerica | exon |
| TCONS_00047073-exon-scaffold_120-1491911889:399361..399480 | TCONS_00047073-exon-scaffold_120-1491911889:399361..399480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:399361..400406 - |
Blast
The following BLAST results are available for this feature:
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