TCONS_00047083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047083
Unique NameTCONS_00047083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047083 ID=TCONS_00047083|Name=TCONS_00047083|organism=Clytia hemisphaerica|type=transcript|length=732bp
tgaaaaaatttgaaccgAGCCGACCTTATCGTTATTGGCTCAATTCAATT
CTAATTGCACTTTTTTGATTTGACAAAATGAAAcaattcaaacattttcc
agggggtaatttttttgtttttcttctatttcttcattttttgccaATCC
AGGGGGTCTTCATTTATACATCATCTGGAAAGCTCATAAAGTTTGTAACT
AAATTCTGTGTTTAAAAAACCCCAAAGACTGGGGAACAATCATTTTTGCC
AGCATATGGTTTTTCTCTTTGGTCTCTTAATGGtccattttgaatgaaaa
cacaTGAGTTTTGCTAAACTGTAGGGAGGTTGAAGCTCGCAAGTGAGATC
AGTAATGTTGAACGTAAAGCCgaccaaaaatgttaaaaagacaatagaaa
attgCCAAGCTGTCGATCCTGAAGTTTTATAAATTCTAGGGCTACGTGTG
ATAGTAAATGATGAacaggatttttgaaaaaataagagATATGCTGAATG
GGCCTACCTGAAACATGTTGAAAGGAAAATGtttgaaggaaaaaagaaag
ataacAGCATAGCATAGAGATGCGTAAGCTTGAAAACATGTACTTGTTTC
ACACTGGCTTTTCGATGTTTTAAGGAGCCCAATATAAAATGTTCTTTTGG
AAAGCAAaccatgctaagttttgggcataaaCAAAATCCTGTAAAGATTA
CTCTATCtctttaaagataaaatctaatgaag
Run BLAST on NCBI

transcript from alignment at scaffold_120:83903..84634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047083 ID=TCONS_00047083|Name=TCONS_00047083|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at scaffold_120:83903..84634 (Clytia hemisphaerica)
cttcattagattttatctttaaagaGATAGAGTAATCTTTACAGGATTTT
GtttatgcccaaaacttagcatggtTTGCTTTCCAAAAGAACATTTTATA
TTGGGCTCCTTAAAACATCGAAAAGCCAGTGTGAAACAAGTACATGTTTT
CAAGCTTACGCATCTCTATGCTATGCTgttatctttcttttttccttcaa
aCATTTTCCTTTCAACATGTTTCAGGTAGGCCCATTCAGCATATctctta
ttttttcaaaaatcctgtTCATCATTTACTATCACACGTAGCCCTAGAAT
TTATAAAACTTCAGGATCGACAGCTTGGcaattttctattgtctttttaa
catttttggtcGGCTTTACGTTCAACATTACTGATCTCACTTGCGAGCTT
CAACCTCCCTACAGTTTAGCAAAACTCAtgtgttttcattcaaaatggaC
CATTAAGAGACCAAAGAGAAAAACCATATGCTGGCAAAAATGATTGTTCC
CCAGTCTTTGGGGTTTTTTAAACACAGAATTTAGTTACAAACTTTATGAG
CTTTCCAGATGATGTATAAATGAAGACCCCCTGGATtggcaaaaaatgaa
gaaatagaagaaaaacaaaaaaattaccccctggaaaatgtttgaattgT
TTCATTTTGTCAAATCAAAAAAGTGCAATTAGAATTGAATTGAGCCAATA
ACGATAAGGTCGGCTcggttcaaattttttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030017XLOC_030017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047083-exon-scaffold_120-1491911889:83903..84634TCONS_00047083-exon-scaffold_120-1491911889:83903..84634Clytia hemisphaericaexon
TCONS_00047083-exon-scaffold_120-1510915933:83903..84634TCONS_00047083-exon-scaffold_120-1510915933:83903..84634Clytia hemisphaericaexon
TCONS_00047083-exon-scaffold_120-1575043694:83903..84634TCONS_00047083-exon-scaffold_120-1575043694:83903..84634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:83903..84634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13567	0	0.0768063	0.300572	0.182959	0.0722882	0.348851	0.244942	0.68596	0.778866	0.206178	0.768022	0.18046	0.0468523	0.115557	0	0.458312	0.260975	0.360551	0.150916	0.393521	0.767783	0	0.141424	0.655484	0.260002	0.0930153	0.198537	0.150583	0.0767103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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