TCONS_00047086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047086
Unique NameTCONS_00047086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047086 ID=TCONS_00047086|Name=TCONS_00047086|organism=Clytia hemisphaerica|type=transcript|length=721bp
GTCCCTTGTCTTGAAAGTACGAAATATCCAAGAGCTGATAGATTTCACTT
TGTTGATTTGGTTTTTGATGTGTTGATTGTAGCTCATATCTACATCTAGA
GTAACTCCAAGGTCTTTGACTTggatttttgtttcaatttgatcTTGAGT
ATCGGAATAATAAACTAAATAGGTTTTCAgctcttcattttttccatatt
gCATATGTTCGAATTTGAGTCCATTCAGTTGCATATGATATCTGCATTTT
TGGATATCGTTGTGTTGACAGAGACTCTCTGTGTTCTCCCTGTAAGAAAT
GACTTTATCCAGGATAGAAGTTTTCCACAAATGCCATTTCTTTCAAGTTT
CTGTAGCAGTATCGAGTGATCAACACGGTCAAATGCTTTACTGAAATAAA
GATAGATGACATCTACATTGTAGCCATTTTCAATATATAGTGGATTAGAC
GTTCAGTGTGAGCAAGCAGTTGGCTTAAGCAGGATCTTCCTGACCTAAAT
CCATGTTGGTTGCTGTTGTAGAGGTTGTTTCTTTCCAGATGATCTTGCAA
ATTTTNGTTGCTGTTGTAGAGGTTGTTTCTTTCCAGATGATCTTGCTAAT
TTTTTCttactatcttttcaaaaactttagtGACGTGTGATGTAAGAACG
ACAGGGCGATAGTTTTCAGCCAATCCTtgatttccttttttgaaaatagg
ggTGATGTAACTTGTTTTCAG
Run BLAST on NCBI

transcript from alignment at scaffold_120:111184..111904

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047086 ID=TCONS_00047086|Name=TCONS_00047086|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at scaffold_120:111184..111904 (Clytia hemisphaerica)
CTGAAAACAAGTTACATCAcccctattttcaaaaaaggaaatcaAGGATT
GGCTGAAAACTATCGCCCTGTCGTTCTTACATCACACGTCactaaagttt
ttgaaaagatagtaaGAAAAAATTAGCAAGATCATCTGGAAAGAAACAAC
CTCTACAACAGCAACNAAAATTTGCAAGATCATCTGGAAAGAAACAACCT
CTACAACAGCAACCAACATGGATTTAGGTCAGGAAGATCCTGCTTAAGCC
AACTGCTTGCTCACACTGAACGTCTAATCCACTATATATTGAAAATGGCT
ACAATGTAGATGTCATCTATCTTTATTTCAGTAAAGCATTTGACCGTGTT
GATCACTCGATACTGCTACAGAAACTTGAAAGAAATGGCATTTGTGGAAA
ACTTCTATCCTGGATAAAGTCATTTCTTACAGGGAGAACACAGAGAGTCT
CTGTCAACACAACGATATCCAAAAATGCAGATATCATATGCAACTGAATG
GACTCAAATTCGAACATATGcaatatggaaaaaatgaagagcTGAAAACC
TATTTAGTTTATTATTCCGATACTCAAgatcaaattgaaacaaaaatccA
AGTCAAAGACCTTGGAGTTACTCTAGATGTAGATATGAGCTACAATCAAC
ACATCAAAAACCAAATCAACAAAGTGAAATCTATCAGCTCTTGGATATTT
CGTACTTTCAAGACAAGGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030020XLOC_030020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047086-exon-scaffold_120-1491911889:111184..111904TCONS_00047086-exon-scaffold_120-1491911889:111184..111904Clytia hemisphaericaexon
TCONS_00047086-exon-scaffold_120-1510915933:111184..111904TCONS_00047086-exon-scaffold_120-1510915933:111184..111904Clytia hemisphaericaexon
TCONS_00047086-exon-scaffold_120-1575043694:111184..111904TCONS_00047086-exon-scaffold_120-1575043694:111184..111904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:111184..111904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.94784	3.14329	6.10166	4.56447	1.78927	1.06618	2.40908	2.68601	2.62737	2.74084	2.31107	2.2157	3.60988	3.64558	1.77355	2.67302	2.58071	3.48516	7.48295	9.8338	4.25119	3.88759	1.89326	2.1204	1.39055	2.94295	6.56389	6.24666	1.10053	1.47098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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