TCONS_00047089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047089
Unique NameTCONS_00047089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047089 ID=TCONS_00047089|Name=TCONS_00047089|organism=Clytia hemisphaerica|type=transcript|length=250bp
CGTATTACTTTCTTTCAAGTCAATTAAATTGATAAATACCTAATTTGTTA
TCTCTCTAATATAATGTTTTATAAACTTTAAAgtaatattatatatattt
taaataCTATATAAATAAAATGAATGCACTTGTGggttttttatacaaaa
aatctAACAACTAAAAAAATGTATTGATATTAAAGAATCTAGGGAGCGAA
ACGTAAAAATCTACGTAAGGGCCGTCCACATaatacgtacgcactaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_120:197042..197291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047089 ID=TCONS_00047089|Name=TCONS_00047089|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at scaffold_120:197042..197291 (Clytia hemisphaerica)
attttagtgcgtacgtattATGTGGACGGCCCTTACGTAGATTTTTACGT
TTCGCTCCCTAGATTCTTTAATATCAATACATTTTTTTAGTTGTTagatt
ttttgtataaaaaaccCACAAGTGCATTCATTTTATTTATATAGtattta
aaatatatataatattacTTTAAAGTTTATAAAACATTATATTAGAGAGA
TAACAAATTAGGTATTTATCAATTTAATTGACTTGAAAGAAAGTAATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030023XLOC_030023Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047089-exon-scaffold_120-1491911889:197042..197291TCONS_00047089-exon-scaffold_120-1491911889:197042..197291Clytia hemisphaericaexon
TCONS_00047089-exon-scaffold_120-1510915933:197042..197291TCONS_00047089-exon-scaffold_120-1510915933:197042..197291Clytia hemisphaericaexon
TCONS_00047089-exon-scaffold_120-1575043694:197042..197291TCONS_00047089-exon-scaffold_120-1575043694:197042..197291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_120supercontigscaffold_120:197042..197291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.13292	4.48542	0.868001	1.69841	0	2.45082	2.95681	1.84542	0	0.80019	0	1.53168	3.56896	1.58846	1.74124	0.934307	0	0.589864	0	1.70553	4.44724	1.0846	6.1529	7.19213	0	0	2.10236	1.12185	3.40353	3.46766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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