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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047090 ID=TCONS_00047090|Name=TCONS_00047090|organism=Clytia hemisphaerica|type=transcript|length=1516bp
GACtggatttttaaaaaacttgtgCTAGTTTTCTGTATGCTTTCAATAGG
AATTACGAGTCTCTTATGACTCGAACGTCAAGAAAGAGTCGTTGAACGTT
CAAATTGAAGAAAGTTTGAGGAAAAGTGATTTCTCAGGtttaatcattaa
aaaaaagtttagatAACCACAGTACAAATTATCGTTtaacaaaaatgttg
tttttcttaAACAATTCGCATTATTTGTTCCTGTCAAAATGGTGACCACA
TGAAAGGAAATGCAGTTTCAAGGTGTACATTTGTTTCTCTCCTTATTCAA
ATGACTCGTATAATTTCATCTGCGGTCAAATCGACTAACAGGTAAAACAg
ttatttcagaaaaaaaaatttaaaggcgACTTGGTTGATTAGATAAAAAT
GATCTCAGAAATCAAATTAACGATTTGTTAAAAGGTTATAGTGGCCTCCA
TTATGATGTTATTTAACATATGATTTAATGAAATTGACGTCATAAATCTG
TAGGTAGCATCAACAACTTGTTGGTATTTATATTTTCGATGCTGATATTC
GATGAGCTGCTTTGGCGCCCACACTAAATGATTTCTTTGCgtgtctcatt
ttttattttgcacCTTATTGAAACGCATCTATATGGTAGGTAGGCTTTGT
TTTGATTCATATGTCCTCTGACATTACATCGCGGACCCAATAGTTGATAG
GATAGTAAGTGATAAAAAATCACTCATTACGTCATTTGCAACCATTCAGC
TGTTgtgtccgtggaagacattgcaatggtttATGTCATGTATAAGGCTG
CTTAAATTACGTGGATTTTGATCATCGAATTATGAACAAAGGATGTATAA
TTTCTGAGTTGATGTCTAgttattgagacagggatgtggaAGATGTCATT
GTAGCCTTTAGTTCCCTCTATAATTTCCAATGACgtgaaaattccgcaaa
ttttgaatattttttactaattccgaaattccgcaaattattTTGCTAAA
tgccgtttttccgcactaaaattgtctaattttccgtctccgtcagagaa
cccaatttccgtaattccgtctaaattttcgccaaattctgccactccgt
ccgaaaaaagggccgattccgctcctccgccaaccatgaacccccccccc
ccccttttttttggATATAGGACCCAGGCTAGATGCTTAGCGGAAATATT
TTACATCACGCACCATTTATGGAAGTTTCGAAGTATTCAGGGTCAGTTCG
TCAGTTTGTTACAGCAATGTGTCacaatttaaataaaattatgagATATA
ATAAAGGGGAAAATATTGTTTCATCAAGATTTTATCTTTTGCCTGTTTAG
ATTAGCATATAGTGACATCACAATACAAACCTATCGCATGCAAAAATGTT
GATTTGATTACTGAAGGATTCAGACTATTTGATGGAAAGAAAAAGTGAGA
TTTTTGGGGTCTCTTAATTACATATCCCCTCTCctaaaaaaatccttaaa
ttcACAGATTTGTTTA Run BLAST on NCBI transcript from alignment at scaffold_120:233457..234972 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047090 ID=TCONS_00047090|Name=TCONS_00047090|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at scaffold_120:233457..234972 (Clytia hemisphaerica)
TAAACAAATCTGTgaatttaaggatttttttagGAGAGGGGATATGTAAT
TAAGAGACCCCAAAAATCTCACTTTTTCTTTCCATCAAATAGTCTGAATC
CTTCAGTAATCAAATCAACATTTTTGCATGCGATAGGTTTGTATTGTGAT
GTCACTATATGCTAATCTAAACAGGCAAAAGATAAAATCTTGATGAAACA
ATATTTTCCCCTTTATTATATctcataattttatttaaattgtGACACAT
TGCTGTAACAAACTGACGAACTGACCCTGAATACTTCGAAACTTCCATAA
ATGGTGCGTGATGTAAAATATTTCCGCTAAGCATCTAGCCTGGGTCCTAT
ATccaaaaaaaaggggggggggggggttcatggttggcggaggagcggaa
tcggcccttttttcggacggagtggcagaatttggcgaaaatttagacgg
aattacggaaattgggttctctgacggagacggaaaattagacaatttta
gtgcggaaaaacggcaTTTAGCAAaataatttgcggaatttcggaattag
taaaaaatattcaaaatttgcggaattttcacGTCATTGGAAATTATAGA
GGGAACTAAAGGCTACAATGACATCTtccacatccctgtctcaataacTA
GACATCAACTCAGAAATTATACATCCTTTGTTCATAATTCGATGATCAAA
ATCCACGTAATTTAAGCAGCCTTATACATGACATaaaccattgcaatgtc
ttccacggacacAACAGCTGAATGGTTGCAAATGACGTAATGAGTGATTT
TTTATCACTTACTATCCTATCAACTATTGGGTCCGCGATGTAATGTCAGA
GGACATATGAATCAAAACAAAGCCTACCTACCATATAGATGCGTTTCAAT
AAGgtgcaaaataaaaaatgagacacGCAAAGAAATCATTTAGTGTGGGC
GCCAAAGCAGCTCATCGAATATCAGCATCGAAAATATAAATACCAACAAG
TTGTTGATGCTACCTACAGATTTATGACGTCAATTTCATTAAATCATATG
TTAAATAACATCATAATGGAGGCCACTATAACCTTTTAACAAATCGTTAA
TTTGATTTCTGAGATCATTTTTATCTAATCAACCAAGTcgcctttaaatt
tttttttctgaaataacTGTTTTACCTGTTAGTCGATTTGACCGCAGATG
AAATTATACGAGTCATTTGAATAAGGAGAGAAACAAATGTACACCTTGAA
ACTGCATTTCCTTTCATGTGGTCACCATTTTGACAGGAACAAATAATGCG
AATTGTTtaagaaaaacaacatttttgttaAACGATAATTTGTACTGTGG
TTatctaaacttttttttaatgattaaaCCTGAGAAATCACTTTTCCTCA
AACTTTCTTCAATTTGAACGTTCAACGACTCTTTCTTGACGTTCGAGTCA
TAAGAGACTCGTAATTCCTATTGAAAGCATACAGAAAACTAGcacaagtt
ttttaaaaatccaGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047090-exon-scaffold_120-1491911889:233457..234972 | TCONS_00047090-exon-scaffold_120-1491911889:233457..234972 | Clytia hemisphaerica | exon |
| TCONS_00047090-exon-scaffold_120-1510915933:233457..234972 | TCONS_00047090-exon-scaffold_120-1510915933:233457..234972 | Clytia hemisphaerica | exon |
| TCONS_00047090-exon-scaffold_120-1575043694:233457..234972 | TCONS_00047090-exon-scaffold_120-1575043694:233457..234972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_120 | supercontig | scaffold_120:233457..234972 . |
Blast
The following BLAST results are available for this feature:
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