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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047099 ID=TCONS_00047099|Name=TCONS_00047099|organism=Clytia hemisphaerica|type=transcript|length=3195bp
TGAAAAAGGATGCATGGTCTCGAGGTActattttaacttttattttttct
acaAGAGAGAATTTGAATGTCTTTGGGTCTTTTTTAATAatgtatattta
tattttagatAGAAGAAACCAAAATGTACAACAATGTGAAAAACATAATA
AGAAATGATGTCACTCCTGACATGATTGGAAAACCATATCTCCTGGCAGA
AACTTCTTTACGTACAACTGATTGGGGAAAAGATTTTCGATTTCTTGGTG
ACAAGATGGCAGATGTTAAACCAGACATAGAAATTGATGAAATTGCAAGT
GATATTTATTTGGTGCGAAACCTTTTGACAGAATCACAATGTGAGGAGAT
CATTGGTAAAGCAAATACATTAAACATGCAACTTTGTTGTTACGCACAGG
AACGAAACAATTCCAGACTAGTTTTATTTGATGAAACATTTGCTGATTTT
CTTTGGAATAATATTTCTGAGAAGTTTATAAACAAACTTGAAAGTGATCA
AATTCATCCATTCGGTTTCGACGCCGCTAGAGGCCATTGGAAGTTATCTT
GTGTCAATCAAGCCATGCGTTTGAACAGATACAGTGGAAAAAGGAAAGAG
TTTTTCGGTCCCCACAGAGATGCTCCATTCTGTCCCAATGGTGATATGAG
ATCATTGTATACTATGCTCATTTATTTGAATGATGATTTTTGTGGCGGAC
AGACAAAATTTTATGTTCCAAAAGACTCATCTATTGACACCAAAGGATGC
ACTGTGAAGGAAGAAATCAAGAGACATAGAAGTTTACGTTCAGGGTATGA
CTGTTTCTCTGTCTCTCCAGAAACTGGTTGTGGtctcattttcaaacaaa
acttGATCCATGAAGGTTGTAAACTTACACCAAACAAAAGTTACAAATTT
GTCATCAAAACAGACATTATGGTTGAACGTGTGGATGTCAAATTGGGATT
CTACCCTCCCAAAGATGAGATTGATGATTATCAGAAATGTTTACAATTAT
TTCGCCAAGCACAGCAATTTGAAATGGAAAAGGACAATAAGAGAGCAAAT
GAATGTTATGAGAAAAGTCTCTCGTTGAGGTATAACTACCCACAACATTT
TGACGCTGTCTCAGAACCTGTGTTGCCAAAGGAATTACCAATCTCTCAAG
ACCATTCCATATCAAATTCACAAATATCAACTTTGTCCACCAACTCATCT
GCTCCTATAACGAACCCATTCAACATTTTCTCTCAAGAGGTTTGGCATAA
GATCATGGTCTACCTGCAGGATGACAAATCTTTACAAAGCTTATGTGAAG
TTTTTCCATCTTTGAATACAGAAAAACGGAAAGTGCTTTCCAGTAGATTC
ATGCCAACTGTTGACTACCACAGTGGAGTTTTCACCAAATTCTCATTTCA
AAATGGAGAATTTGTCACAGCCAATCTGGAAAGATGCATTAAAGTTGCAG
CAGTGCATTCAATTTGTTTACTCGGAAATGCACCCAATGATAAACACTAT
TTGGTAAATTATGATAGAGAAACAAGGAGTGCAACAACTGTACAGTTGAG
AGATCTTCTTTATGGTGTATTTGCTGAGGAATCTGTTCACGGTACCATCT
TCAAAGTAGCTCAAAGAAAAGCTAACAAGAATCCAAATGAAGATTTGTAC
CATAGTGTTGATAGGAAATTCATGTCAACACATTTCGATCGAGATGATAT
AGGCATTGATGTAGAATCTGAAATCAGATCACATGTCACGAGGCTTGGTC
GAGAATCTGATGATGAAGAATCTGGTGGTGAATCCGATGGTGAATCCAGC
TCTGGCCTTGATTCTGACTATGACGATTGTGAGGATTACTTCTCAAACAT
TGGCAAGTGGAAATCTTACAAGTCAAGAGACTTTCATGGACGATATATTC
TCAATGCTATTGACAGATATTATGAATACTGTAAAAATGAGTTACCACCC
GACACAGAAGATATACCAGAGCCTGAATCGTCAGAGGGATCAAATTCTCA
ATCAGAATTAGATCTGTATGCTTTGAAATCAGAAGAATTTCAATGTATAA
CGTACACTGACGAGGCGCGAGATGAATTCTTCAACGATTTCTTTTCTCAA
TGTGAAACATTTCCACCAACATATTCTGCTACTAAAATTGATGTTCCAAA
TGTACCGAAGCCAGGATCAACCATCGTCAGAAAACTCGATCGACCTGTCA
CCATTGAAAAGGATGAAAATTGTTGTTGCATGTTTAAAGATGTTACTGGT
ACATTCAGTAAGGAATGTTCAACGCATACTTTCAACAGTATTATTGCTGA
CTTCAGCAAAATTAAATTAACCGTCAACGATTTGGTTGAAGAATCTCCTA
TTACGGAAGCAAGCGGCTCGCTGTATGCATGGCTCGAAAATTTTTGCGAA
AGCGACTTATTTGATTTAACGGATTGGAGCGTTCGAATGACCGAAATGGA
GCAGATTTTACCCTCATTTAACCATGCGTCGTGCCAGTGTGGGTTCCCCA
AATATCGAGTTGACGATTACGTCAATTTGTCGAGCTACCCTTTGTTGGAA
AATGTGGTTATCACTGTTGCGAAAAACAAAGTTGATCCTAATGAAGTTTA
TATTTTCACTGCGTACGGAGGCATTGCTGCTCTTTGATTAATTTCACCGT
CATCACGTCACGAAAAGCAATATACATTATCGCACTTTTGTCGCACTTGG
TCGTTCTGaagttatttttgtattatattttttacagtttttaatgatta
taattttcttttgtaaCAATTACTGGTATACTAatttctaaaacttaatt
tctaACATTATGATAATTGCAAGAATTGCATATACGAATAATTAACATTT
ACAGTTTCTGACTTCGGAAGGGACCATGCTTCCCGATTGGGAAAGTTCCC
TTTGTGTACTCCGTAAATGACCGTGGAAGgttaaagctgaaaattttcgG
GACATCCAATGTGGTGGCCATTACGAATGACAGAATCGGGAAGGGATTTT
CTTTTTAGTCAACGCAATCTTTTCGTTCAGGAAATTTTTCGTGATTACCA
GCTCTGATCATTTATTCATTTCACTtactcattcattcattcattcattc
attcatttatttataaacattttACAGCATTATTTTTGGAGGgccatttt
cattttatcaCTTGTCGTATATATTTTGTATTTAAACTAATTATG Run BLAST on NCBI transcript from alignment at scaffold_121:3946..10037+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047099 ID=TCONS_00047099|Name=TCONS_00047099|organism=Clytia hemisphaerica|type=transcript|length=6092bp|location=Sequence derived from alignment at scaffold_121:3946..10037+ (Clytia hemisphaerica)
TGAAAAAGGATGCATGGTCTCGAGGTActattttaacttttattttttct
acaAGAGAGAATTTGAATGTCTTTGGGTCTTTTTTAATAatgtatattta
tattttagatAGAAGAAACCAAAATGTACAACAATGTGAAAAACATAATA
AGAAATAACATCACGCCTGACATGATTGGAAAACCATATCTCCTGGCAGA
AACTTCTTTACGTACAACTGATTGGGGAAAAGATTTTCGATTTCTTGATG
ACAAGATGGCAGATGTTAAACCAGACatagaaattgacaaaaattgcaAA
TGATATTTATTTGGTGAAGAATTTGTTGACTGAACCTCAATGCAAAGAAA
TTATTGGTAAAGCTGAAAATCTAAACTTGCAGTTATGTTGCTATGATGAA
ACAAGAAAGAATTCTCGATTAGTTTTATTTGATGAAGAATTTGCAGATTT
TCTTTGGGATAATATTTCCAACCAATTTGAAAAGCAAATCGGAGATGCTC
GTATTCATCCATTTGGCTTTGATGCAGCTAGGGGCCATTGGAAGTTATCT
TGTGTCAATCAAGCAATGCGCCTGAGTGAATAGatatggcggaaaaaaga
aagaattttttgctCCTCATAGAGATGCTTCATTTTGTCCCAATGGTCAC
AAAAGATCGTTGTATACTATGCTCATCTATTTGAATGATGGTTTTCGTGG
CGGTCAGACAAAATTTTATGTTCCAAAAGACACAACAATTGTCACTAAAG
GCTGCACTATAAAGGAGGAGGTAAAAGAGAAGTTTATGTTCAGGATATGA
CTGCCATATTATTGCACCAAAGACAGGGCAAGCAgttattttcaaacaaa
atctgATTCATGAAGGATGCAAGCTTTCACCAAAGAGTTACAAGTTTGTA
ATCAAAACTGATATTATGACTGAGCGGGTTGGAAAAAAGCTTGGATTCTG
CCCTCCTaaggaaaaatttgatgataaTAAGAAGTGTTTGCAATTATTTC
GCCAAGCACAACAATTTGAATTGGGACGTAATTATGATAAAGCTAACGAG
TGTTATGAACGAAGTCTCTCTTTGAGGTATTGCTACCCTCAGAATCTTGA
TGGTGGTATTTATCAAAAAGGAGAACAATTATTGACTGACAATGTTGCAG
AATCGCAAGAATCTTTACCTTGCTCTCAAATATCAACTCTCTCCACCTCA
TCAAATACAAATCCTTTCTACATTTTTTCTCAAGAGGTGTGGCATAAAAT
TATGGTCTACCTGCAACATGACAAAGCTTTACAAAGCCTTTgtgaagttt
tttcttttttaagctcAGAGCGAAGGAAGATTTTGTCCAATCAATTTGTG
CCAAAGGTTGACCATCATAGtggaattttcaccaaattccCATTTCAAAA
TGGAAAGTTTGTTTCTGAAAATCTAGAAAGGTGTATTAAAGTTTCAGCAG
TTTATTCAATGTGTTTACTTGGTAATGAGCAAAGAAATTCGCATTATTTG
GTGAATTATGATAGAGAAACTAGAAATGCTACTACAGCCCAATTGAAAGA
TCTTCTTTATGGGGTGTTTGCTGAGGAACCTGTCCAAggaacattcttca
aagtagctCAAAGAAAAGCTAACAAGAATCCGAATGAAGATTTGTACCAT
AGTGTTGATAGGAAATTCATGTCAACACATTTTGATCGAGATGATATTGG
TATTGatttaaaatctgaaattaGATCACATCTCACGATATATGATAAGG
ACAGTGATGATGAAGAGTACAGCGATTCTGAGGAAAGTGACCGAGAAGGA
AAAACTGATGAATTCACGAAGAAAGATTTCTACAATAATGCCAAAGATAA
ACCATATCCTATAAAAGATTTTCACAATCGTATAACCTTAGATGGTTTTG
ACCACTATTACCGATATTGTAGAAATAAGTTTCCACCTAAGTCAGCTGAC
GAGGCTGATTATTATAAATCATCTGCTTGTTTATATGATTGTATTACGTA
CCCAGAAGATCAACGAAACGAACTACTGGAAAAATTAGTCCCTGAAGACC
ATTACAACTATCATGTAACCAGGATGAATGTTCCTACCTCATTAGAACCA
AGTTGTGCAATCTTCCGAAAACTAAATAAACCAATTGATGATATGAGAGG
AGAGAGCTGTGTTTGTGTTTTTGCAGATGTTGGTAGTAGATTGACTGAAA
ACTGCTCCACTCATCTTTTTAATAGTATTGTTGCTAATTTCAGCAAAACG
AAACTGGCGGTAGAATTAGCTGCTGATTATTTGAACTCAGTTTACCAATT
TTCCCAATGGATTGAACATTTTTGTGATGATGGAGATTTTGAGTTGATAA
CATACCGTGTAAATATCAGGCAAATGGAAGAAGTGTTCTCTTCTTTCAAT
CATGCGTCGTGCCAGTGTATGTTCCCAAATTACAAAGTTAATGATTATGT
CAATTTGTCCAACTATCCAATGTTAGATACCATTGCTGTTGTCGTGGCAA
CGAATAAAAAGGATTCAAACGAAGTTTATATCTATACGGAGTATGATGGT
ATCACTGCTCTATGatgaattattttgttttatgaTCCTATTTGCACATA
CAAGcttcagtttttttgttttcgtaGCTCACTCAAATATATATCACAGT
AAATAGTTTTATCTCAAAACATTGTAGATAGCAAGTTtcgaataaaactt
tttttaacaaactGCCAAAAGGTTGATATCTATCTTCACCAATCAGTGGA
AATAATATCCCTTAAACTATCCAaatataattatattttattttaaagat
tattagagcctaaaaaatgttcttaatatgttcttatttttcaccatttt
gtgatttttttacccattttcctaaaatatcgggtgttttcgagtccgca
aagccttaaaatgttcttacttgttcttaacattttggccatcaaagcct
tatgttcttatatagtttgttcttataaaaaacgtgtatattatttttca
ttttagataaataaaacaaaatgtaTAAGAACGTAAAAAACATAATAAGA
AATGATGTCACTCCTGACATGATTGGAAAACCATATCTCCTGGCAGAAAC
TTCTTTACGTACAACTGATTGGGGAAAAGATTTTCGATTTCTTGGTGACA
AGATGGCAGATGTTAAACCAGACATAGAAATTGATGAAATTGCAAGTGAT
ATTTATTTGGTGCGAAACCTTTTGACAGAATCACAATGTGAGGAGATCAT
TGGTAAAGCAAATACATTAAACATGCAACTTTGTTGTTACGCACAGGAAC
GAAACAATTCCAGACTAGTTTTATTTGATGAAACATTTGCTGATTTTCTT
TGGAATAATATTTCTGAGAAGTTTATAAACAAACTTGAAAGTGATCAAAT
TCATCCATTCGGTTTCGACGCCGCTAGAGGCCATTGGAAGTTATCTTGTG
TCAATCAAGCCATGCGTTTGAACAGATACAGTGGAAAAAGGAAAGAGTTT
TTCGGTCCCCACAGAGATGCTCCATTCTGTCCCAATGGTGATATGAGATC
ATTGTATACTATGCTCATTTATTTGAATGATGATTTTTGTGGCGGACAGA
CAAAATTTTATGTTCCAAAAGACTCATCTATTGACACCAAAGGATGCACT
GTGAAGGAAGAAATCAAGAGACATAGAAGTTTACGTTCAGGGTATGACTG
TTTCTCTGTCTCTCCAGAAACTGGTTGTGGtctcattttcaaacaaaact
tGATCCATGAAGGTTGTAAACTTACACCAAACAAAAGTTACAAATTTGTC
ATCAAAACAGACATTATGGTTGAACGTGTGGATGTCAAATTGGGATTCTA
CCCTCCCAAAGATGAGATTGATGATTATCAGAAATGTTTACAATTATTTC
GCCAAGCACAGCAATTTGAAATGGAAAAGGACAATAAGAGAGCAAATGAA
TGTTATGAGAAAAGTCTCTCGTTGAGGTATAACTACCCACAACATTTTGA
CGCTGTCTCAGAACCTGTGTTGCCAAAGGAATTACCAATCTCTCAAGACC
ATTCCATATCAAATTCACAAATATCAACTTTGTCCACCAACTCATCTGCT
CCTATAACGAACCCATTCAACATTTTCTCTCAAGAGGTTTGGCATAAGAT
CATGGTCTACCTGCAGGATGACAAATCTTTACAAAGCTTATGTGAAGTTT
TTCCATCTTTGAATACAGAAAAACGGAAAGTGCTTTCCAGTAGATTCATG
CCAACTGTTGACTACCACAGTGGAGTTTTCACCAAATTCTCATTTCAAAA
TGGAGAATTTGTCACAGCCAATCTGGAAAGATGCATTAAAGTTGCAGCAG
TGCATTCAATTTGTTTACTCGGAAATGCACCCAATGATAAACACTATTTG
GTAAATTATGATAGAGAAACAAGGAGTGCAACAACTGTACAGTTGAGAGA
TCTTCTTTATGGTGTATTTGCTGAGGAATCTGTTCACGGTACCATCTTCA
AAGTAGCTCAAAGAAAAGCTAACAAGAATCCAAATGAAGATTTGTACCAT
AGTGTTGATAGGAAATTCATGTCAACACATTTCGATCGAGATGATATAGG
CATTGATGTAGAATCTGAAATCAGATCACATGTCACGAGGCTTGGTCGAG
AATCTGATGATGAAGAATCTGGTGGTGAATCCGATGGTGAATCCAGCTCT
GGCCTTGATTCTGACTATGACGATTGTGAGGATTACTTCTCAAACATTGG
CAAGTGGAAATCTTACAAGTCAAGAGACTTTCATGGACGATATATTCTCA
ATGCTATTGACAGATATTATGAATACTGTAAAAATGAGTTACCACCCGAC
ACAGAAGATATACCAGAGCCTGAATCGTCAGAGGGATCAAATTCTCAATC
AGAATTAGATCTGTATGCTTTGAAATCAGAAGAATTTCAATGTATAACGT
ACACTGACGAGGCGCGAGATGAATTCTTCAACGATTTCTTTTCTCAATGT
GAAACATTTCCACCAACATATTCTGCTACTAAAATTGATGTTCCAAATGT
ACCGAAGCCAGGATCAACCATCGTCAGAAAACTCGATCGACCTGTCACCA
TTGAAAAGGATGAAAATTGTTGTTGCATGTTTAAAGATGTTACTGGTACA
TTCAGTAAGGAATGTTCAACGCATACTTTCAACAGTATTATTGCTGACTT
CAGCAAAATTAAATTAACCGTCAACGATTTGGTTGAAGAATCTCCTATTA
CGGAAGCAAGCGGCTCGCTGTATGCATGGCTCGAAAATTTTTGCGAAAGC
GACTTATTTGATTTAACGGATTGGAGCGTTCGAATGACCGAAATGGAGCA
GATTTTACCCTCATTTAACCATGCGTCGTGCCAGTGTGGGTTCCCCAAAT
ATCGAGTTGACGATTACGTCAATTTGTCGAGCTACCCTTTGTTGGAAAAT
GTGGTTATCACTGTTGCGAAAAACAAAGTTGATCCTAATGAAGTTTATAT
TTTCACTGCGTACGGAGGCATTGCTGCTCTTTGATTAATTTCACCGTCAT
CACGTCACGAAAAGCAATATACATTATCGCACTTTTGTCGCACTTGGTCG
TTCTGaagttatttttgtattatattttttacagtttttaatgattataa
ttttcttttgtaaCAATTACTGGTATACTAatttctaaaacttaatttct
aACATTATGATAATTGCAAGAATTGCATATACGAATAATTAACATTTACA
GTTTCTGACTTCGGAAGGGACCATGCTTCCCGATTGGGAAAGTTCCCTTT
GTGTACTCCGTAAATGACCGTGGAAGgttaaagctgaaaattttcgGGAC
ATCCAATGTGGTGGCCATTACGAATGACAGAATCGGGAAGGGATTTTCTT
TTTAGTCAACGCAATCTTTTCGTTCAGGAAATTTTTCGTGATTACCAGCT
CTGATCATTTATTCATTTCACTtactcattcattcattcattcattcatt
catttatttataaacattttACAGCATTATTTTTGGAGGgccattttcat
tttatcaCTTGTCGTATATATTTTGTATTTAAACTAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047099-exon-scaffold_121-1491911889:3946..4089 | TCONS_00047099-exon-scaffold_121-1491911889:3946..4089 | Clytia hemisphaerica | exon |
| TCONS_00047099-exon-scaffold_121-1510915933:3946..4089 | TCONS_00047099-exon-scaffold_121-1510915933:3946..4089 | Clytia hemisphaerica | exon |
| TCONS_00047099-exon-scaffold_121-1575043694:3946..4089 | TCONS_00047099-exon-scaffold_121-1575043694:3946..4089 | Clytia hemisphaerica | exon |
| TCONS_00047099-exon-scaffold_121-1491911889:6987..10037 | TCONS_00047099-exon-scaffold_121-1491911889:6987..10037 | Clytia hemisphaerica | exon |
| TCONS_00047099-exon-scaffold_121-1510915933:6987..10037 | TCONS_00047099-exon-scaffold_121-1510915933:6987..10037 | Clytia hemisphaerica | exon |
| TCONS_00047099-exon-scaffold_121-1575043694:6987..10037 | TCONS_00047099-exon-scaffold_121-1575043694:6987..10037 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:3946..10037 + |
Blast
The following BLAST results are available for this feature:
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