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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047104 ID=TCONS_00047104|Name=TCONS_00047104|organism=Clytia hemisphaerica|type=transcript|length=1617bp
cNTGCTTGACGAAGAGGAAGAGCAAACAGTTTATTTCAGTTCAGGATCAA
AAAATGGGGAGAAAGAAACAAATGAATTACTCTTTGATCCCCAGGTTCAC
TACCAGAACACAAATCAACAAGTTCCTAACATGAATGGAATGGGGAATGG
AATGGTGCAACAAATGACACAACAAATGCAAAGTTTATATATTCCAAATA
ATAAACCTCCTCAACAAAATGGCAATTACAATTTTCAACACTACAACAAC
ACTGACCATGTTAACAAACCTGTACATTCTAAACCATTAATGGATAGCTC
AATTGTTTCAAAGTCAAAACTGAACCCGAACGCTCAACCCTTCAGTTTTA
ATCCGAACGCTCAAGTCTTTGTGCCGAAGGGGTTCACTACGAGGCCAACC
AAAATGACATACGAACAAGCGAGTCATACTAAACCAATGCAACGATTCCC
ACATGGGAGCAGATAGTGCGAAACGGCAGAGAACTGCAGTCAGAATGCTT
AGTTTATTTATGGCCGTTGGTTGCATGAATGGATGAAGcaggggaaaaaa
gaaaaagactgataGGTCGTTGTAAATTGCACTCAACACACAAGGTATAA
AATTTTGgtgttcttttttttaatgatggaaaatttttaatttttatcaa
ttttattttttagtttaaaatccaataaatttttcttcctaactcatttt
gaaatggttgattttattatttacaGTTAGACACCGGTCTCAAAAACGTA
ATATGGTTTCCTTAAACATTCTTTTGAGAAATACAAACTTTGACAAAAGT
TAACTAACCCTTTATTATTTTAAGGGATTTTATGTTGTCAACAAAATGTA
AAGAAATTTGTGTTCTATGAAATATTTGATTATGatttaataaaagaatc
ttattttGGTAATGTATTAATGTACATTTTCATTATATACAATTATTATT
TAACAAAAGCATTTGTTTATATTATAGTATCGTGAAAACCCCTCCTTTTT
CTTCTCATTCTACATTGTGAGAATCATTTTCGTGTTCAAACTACATCATC
CCTGACTTTTTTCAACTGGCTTTACATGCTAAGTTATCAAATTGGTATCT
CAAAACGAAGGTTTTTGGCTTCGATCAGAAACAGTTTGTTCCTTTGCTCA
TTTCCAAGGGATTGACCAGACTGACTCAGTTTTTCTTGCTAATAGCTTAA
TGGCTACCTCTTCTTTCTGGTACATGTCAAATGACTCcacgaattttcaa
tttttctgtcCTGTAAGTTTGTAACGTGTTATTTTTGATTGGTTTTGGTC
GTTTGGAGAATTCTCAAATATGGTATGTAATAGTtctttttttgttataa
gaCCCTTTTTACACTTTCATTCATGGAAGAGGATTTCAAGAGAGTTTATA
AAAAGAGACTTGTACATATATGATATggtcattttattttgaatttgtag
aatacttgttttttttaaaaaaggttgttttttccaaaattattcatttt
tctcaaattcattATTGAAGCATCCCGTCAAGTGACAAGTTTGATCCTGT
AGATTGAGGTTTTTACTCTAAAAAATATAACTGAGGTCCatcggttttcg
tgatggcgtgattggcg Run BLAST on NCBI protein sequence of TCONS_00047104-protein >TCONS_00047104-protein ID=TCONS_00047104-protein|Name=TCONS_00047104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
XLDEEEEQTVYFSSGSKNGEKETNELLFDPQVHYQNTNQQVPNMNGMGNG
MVQQMTQQMQSLYIPNNKPPQQNGNYNFQHYNNTDHVNKPVHSKPLMDSS
IVSKSKLNPNAQPFSFNPNAQVFVPKGFTTRPTKMTYEQASHTKPMQRFP
HGSR Run BLAST on NCBI transcript from alignment at scaffold_121:31533..38787+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047104 ID=TCONS_00047104|Name=TCONS_00047104|organism=Clytia hemisphaerica|type=transcript|length=7255bp|location=Sequence derived from alignment at scaffold_121:31533..38787+ (Clytia hemisphaerica)
cNTGCTTGACGAAGAGGAAGAGCAAACAGTTTATTTCAGTTCAGGATCAA
AAAATGGGGAGAAAGAAACAAATGAATTACTCTTTGATCCCCAGGTTCAC
TACCAGAACACAAATCAACAAGTTCCTAACATGAATGGAATGGGGAATGG
AATGGTGCAACAAATGACACAACAAATGCAAAGTTTATATATTCCAAATA
ATAAACCTCCTCAACAAAATGGCAATTACAATTTTCAACACTACAACAAC
ACTGACCATGTTAACAAACCTGTACATTCTAAACCATTAATGGATAGCTC
AATTGTTTCAAAGGTAGTAtatatgtttagttttttttaataaagggAAT
ATCTGGCATGTGGCGTGGGTtccattgggccattccagaatttgtctgta
acatgGGGTNagccttagtatgttcttagaatgttcttaaatttttgggc
ctcgaagccttatgttcttatatagtttgttcttataaaaaaaaacgtgt
aggtggAAATTGGAAACATACTCCGTCGTAGTCACCCTGATGGTACGTTT
ACTAATAGTCCTGGAGGTTTATCTCATCGATTTGTTATGTTATTTTGGGC
TTCCATCACCACACATATTATGTAAAATTTCGCGTGTGGTTTATAAATTT
AGTCGCGAATTATCTAcgccctgagtatcagaggccaaCTACTAGCtgtg
atactcagggtacacgAATTATCTGTAGTAGGGCGATCATCGAAGGCGTT
TAAATTAGCGGGTGGGGCGGGATGCTCAGGATTTAAAGCTCTGTTTACAT
TACTTCTTTTCACCTccaattttgtctttttatattttcaacgttttcaa
ttcaaaataatCTTCTATGCAATTTGATTGATCACAATTCTATCATTGGT
GCAAACAGAGTTTGAAGATTGTATAATAATATTTAATTGCCTCTTATTTT
TCTAACNgatttccgagggcaaaagttttcaccaaaattcgaaatttcca
aggcgagagaagaaaatgtatgaatttccaaggcaattgaattaaaaaaa
gcaaaaaagtgtGGAATTTCCAATGCAtattgcaaaagtacatggatttt
tatcagaatttccgaccaccactggaaaagaaaaattatttcagagGCTA
GCGAAgattaaaaaatgcacgtcgtccgacatggggtaacaaaaattttc
tggaatggcccattacaGTAGTATATGTACATACAGTATTTAAATTTGCA
CTACCTTAaaggggattaaatttcgcagggattatatttcgcgaattttg
cgAGTTTTTGCGAAATTCACAAAatataatcctcgcgaaaattaagtttt
tagaGATACGTAATTTTAAGGGGTTTTTTAGACATAATTTCCCTAAAACA
AGCCAATTTCTCGCGAAACTCTCGAAATTTaattctcgcgaaaatttaga
aTTCTCGTCTTCGCAAAAATAAgtcccgcaaaaattaaattatttcgcga
aaaaattgtctcgcaaaaataagttcccgcgaaaattaatccccttaacc
agatggtgtcaatcgaacaacttcgaacaaaaatcgcaatcgaaccaatc
gaacgcgatcgaataattgtgattcgattgtcgaacgtaatcgaatctta
atcgaacggccgattcctggataatattcgattgtgttcgattgcgttcg
agtaatgttcgattgatagttgactatgttagattggttcgattgattgt
caattacattcaattaatgttcgattacgattaaatcaaattggatcact
ctgttagagctttttagcgcgggcggccgagtgcttaagtaccataacca
aagcaaataaaatctaatacacaattgaatcaatcaaacgtaatcgaata
caatcgaacgtaatcgaagcaatcgaacagtaaatcccgggtaatattca
attgtgattcaattgcgttcgacaatcgcattgcaattattcgattgcgt
tcaattgcgttcgattgattcggcgttcgattcgttagattgacaccgtc
tggcctTAAGGTATTCATTCTGCTCTGCAGCAGTTTATGCTGTAGTTGGG
CTTGAGTTTTTATTAACTctatcagttagtcacactaggaaatctagctt
tcagaaaaaacaacatcagtcatctacaggatacatttcaacaacaagga
tgagagttacctgaatcaagttcgcaagacaatattaattaaaacttgaa
agttggaaacaaaataaaacgtctagcagccaaaatcaaccaaccaaaat
ttgtcattcaattcccgagacagcgcttcgatttttaaggccttgtttat
aaactaaagtaaaaacaattacgcacatgtaaatatgggtcattgtttga
ggtccggcaaaatttccaggagatagcctatccggttccgcctcccccgt
agatctttttcttggtaagttgatcttcaaattagttttcaaggctGGCT
tgactcaaattttttcatctatgactcaaattttaggcaatttctcaaag
tttttgaaaatgttaatttcattaaaaagtgccgggttattttttcatga
atccaataagttttgcggtgcatttttttgcttgagagtcaagtaaacgg
tatagcgctttcgcagcattaatctttgatacgcattttggcgggacgct
agtgttgCTAACTGTCTATACCGCAAAGTGGGGTAACTTGCACAGtgcag
tggagggaaacttgcatagccatctaGACTgatcaatcaaagcagcaaaa
tttcaaacaaatgaaTTACCGtaaactgctctaacttgggtcgaattggt
cgaaacatgggactggttgatatctgcatagctgtcaacttcgtctcaca
aaaatgcgggagagctccaagtcggaaaaattttccctgatAATCCAATT
TCTCCAAATCGGAAAATTGGGAATTCGGGGGGAATTTTCCTGTGAATttg
attttattggaaatgtgagagaaaatcctgaaaattcaggagatttggct
aaatttttttCCTGCGAGAGAAAACGTTGGTATGCAGGAGTCTCCTGCCC
AATGCGGCCAGCATGGAAATGGTGCACAGTACGCCGAATATATTTGGAGT
GAGGCAGTACTAACTATTGGCATATTGGTGTAAGGAGCGGATATAAAGTA
AGATATCGACGTaagtcaaagtttttgaagactAGAGGAGTACCGTCATT
TTAACATCTGATTTTATTACGCCAGGTTTAAGCGCATCCACCTCCGCTCT
CCGCCCCTCCCTTGACCGTCATATAACAATGTAGAGtgtaaataaaatat
aaagcttattttgagctacTTTTAGGCGTGGAAAGATTAAATACCCCAAG
GCTTTCGGAGGCTTTGCCCCCTGAACCCCCACCAAGACTCAGCCCCTCCC
CAAACACCCCCCGCAATTTCCACAAGCAGAACTTTCTTTGGCGTAGACCT
CAGCTTTTAAATAACATAACAATTCGGCGTGTACTTAACATCGTTTCCAC
ACTGGCAATGCGgaagagttgacagctatgtatctggcctgtattttcac
ttactgttaaatctcattgagaacaaatttgttttgataactccgccaag
tttatcaatcatacttctttgtTCCTCTTAACTTAGTTTCTTCGAGTGCA
CAGACAGacattcgcgtgtgttccactacggattttttacatatttcgat
ttaaaagcctactcggtgtgaaaaagaaattgtgtatttttgaaTATGCC
GTTTgataactcaaatcaaatgagttcaccccacttttttgctaagaaag
gcccgtcggcgccaaccatggtggcgcctccttagacacttactatttgg
cccctccactttcaaaattgtttcGCCGGCCCTGATGTTTTGttagatag
tcccaagttagagcaggtTGATGGTACGCAGCTCTTCTTGCAGCTCTACT
CcatcacttttgttttgattttactttgtGAAATTGCAATAAGGAAAATA
TATATTCTGTAACATTACAGTTTTGAGCAAGGCTTTATTTCTAGGCGGTA
GTGTCAATTTAACTCTACGATCTATCACAGCACACAGGGCTGCATGCTTG
GTTTTCCAATTATACTATTCATTCTTTTCTCGTTATCTCAAGCATTaatt
aaaattctaaaatattttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtttcatttatttatttattcatttttcatttttttaac
aaacaaatGTACGGATAATGGGTCCTAGGACCTTTtagtatgaaatatat
agatagatagataacaaattcaaacaaaaatcgcaatcaaaccaatcgaa
tgtaatcgaacacaatcaaataattgtgatttgattctcaaacgcaatcg
aatttgAATCAAATTTCCGATTCCTGGATGatatttgattgtgtttgaat
atcgtttgattggtttgattgcaaTAGCAGGacaaaagtcagttttttga
agtttgcgaAAAActccacatagaagatctttcaattGTTCAGTACCGAC
AACTGccctaacttgggacgattggtcaaaacatgggactgttagatatc
tggcctgtattttcacttactgttaaatctctttgacaacaaatttgttt
taataactccaccaagtttatcatcatactttctgtcataacatgtcacg
ataactttcactgaaaATTccacgccctttttaacttttttgttttcatt
caaaatgaccggacaccGATTGGAGAAATAGAGAATGCCTGaggcctaac
cgcctatcgcccgaagGGATtattaacaaataacaagtgtgtaacttgcc
acgcaagtgacgtcaaacgctccatcgttttgccactaatttggtcttct
tcattccagacattcgcgtgtgttccactacggattttttaaatatttcg
atttaaaagcctggAGGTTTGGTAAAACAGTGGTAggattgccgtcccat
gtttggtcagatagtcccaagttagagcagttgacggtaactgATGATCT
GCAACCACAGCTTTTTTCTTCCTGTATCTCTGCATAAAATTCAACATTGC
AGATGGAAgggcaaaaaggtctattaccgACATCACATCacagacccaat
agctgatcggttaagtgacgtaaaattcaTCAATATGtcaatttcaacca
atcagctgttgagtccgtggaagacatttctagattttcttaaaagatat
ttccctgattttccaatttttggataaaaaaaagTCTGATTTCGGATTTA
GAAAATTATCAGGCAGGCCAGTTATTGAGGCCTGTTaacatataaaaaca
taagataCTTCAGATGGTTCTAATTTGGCAAAGATGATCCTCaaagggtc
taaaacttaattttaaacagtaacaccaaattttgtcacCTGGCCActgt
ggaaaatatttttggatctACCCCGATGGGGTAaaaaggtcctataaatt
aactgatgttcgtttgttcgttagttagttaccaacttttcttgagattg
attggctcattagttttttgtgattttttgcacaaagatgcgtaatagca
atgcccaaaacatgtcaaaatccaatttttgagaaaaattcttttccggc
cgtCATCCGGGCGGCAATTACACGCTCGTAATTTGTTCATTATATTTTGG
CCGTGGGCAGTTTAACGGCGGGCACTCTCACTCTTTTTCTAGAGAAGCCC
ATTTTGTtctttctattaattttttgtttgcgtttttctttgttctttca
GTCAAAACTGAACCCGAACGCTCAACCCTTCAGTTTTAATCCGAACGCTC
AAGTCTTTGTGCCGAAGGGGTTCACTACGAGGCCAACCAAAATGACATAC
GAACAAGCGAGTCATACTAAACCAATGCAACGATTCCCACATGGGAGCAG
ATAGTGCGAAACGGCAGAGAACTGCAGTCAGAATGCTTAGTTTATTTATG
GCCGTTGGTTGCATGAATGGATGAAGcaggggaaaaaagaaaaagactga
taGGTCGTTGTAAATTGCACTCAACACACAAGGTATAAAATTTTGgtgtt
cttttttttaatgatggaaaatttttaatttttatcaattttatttttta
gtttaaaatccaataaatttttcttcctaactcattttgaaatggttgat
tttattatttacaGTTAGACACCGGTCTCAAAAACGTAATATGGTTTCCT
TAAACATTCTTTTGAGAAATACAAACTTTGACAAAAGTTAACTAACCCTT
TATTATTTTAAGGGATTTTATGTTGTCAACAAAATGTAAAGAAATTTGTG
TTCTATGAAATATTTGATTATGatttaataaaagaatcttattttGGTAA
TGTATTAATGTACATTTTCATTATATACAATTATTATTTAACAAAAGCAT
TTGTTTATATTATAGTATCGTGAAAACCCCTCCTTTTTCTTCTCATTCTA
CATTGTGAGAATCATTTTCGTGTTCAAACTACATCATCCCTGACTTTTTT
CAACTGGCTTTACATGCTAAGTTATCAAATTGGTATCTCAAAACGAAGGT
TTTTGGCTTCGATCAGAAACAGTTTGTTCCTTTGCTCATTTCCAAGGGAT
TGACCAGACTGACTCAGTTTTTCTTGCTAATAGCTTAATGGCTACCTCTT
CTTTCTGGTACATGTCAAATGACTCcacgaattttcaatttttctgtcCT
GTAAGTTTGTAACGTGTTATTTTTGATTGGTTTTGGTCGTTTGGAGAATT
CTCAAATATGGTATGTAATAGTtctttttttgttataagaCCCTTTTTAC
ACTTTCATTCATGGAAGAGGATTTCAAGAGAGTTTATAAAAAGAGACTTG
TACATATATGATATggtcattttattttgaatttgtagaatacttgtttt
ttttaaaaaaggttgttttttccaaaattattcatttttctcaaattcat
tATTGAAGCATCCCGTCAAGTGACAAGTTTGATCCTGTAGATTGAGGTTT
TTACTCTAAAAAATATAACTGAGGTCCatcggttttcgtgatggcgtgat
tggcg Coding sequence (CDS) from alignment at scaffold_121:31533..38787+ >TCONS_00047104 ID=TCONS_00047104|Name=TCONS_00047104|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_121:31533..38787+ (Clytia hemisphaerica)
NTGCTTGACGAAGAGGAAGAGCAAACAGTTTATTTCAGTTCAGGATCAAA
AAATGGGGAGAAAGAAACAAATGAATTACTCTTTGATCCCCAGGTTCACT
ACCAGAACACAAATCAACAAGTTCCTAACATGAATGGAATGGGGAATGGA
ATGGTGCAACAAATGACACAACAAATGCAAAGTTTATATATTCCAAATAA
TAAACCTCCTCAACAAAATGGCAATTACAATTTTCAACACTACAACAACA
CTGACCATGTTAACAAACCTGTACATTCTAAACCATTAATGGATAGCTCA
ATTGTTTCAAAGTCAAAACTGAACCCGAACGCTCAACCCTTCAGTTTTAA
TCCGAACGCTCAAGTCTTTGTGCCGAAGGGGTTCACTACGAGGCCAACCA
AAATGACATACGAACAAGCGAGTCATACTAAACCAATGCAACGATTCCCA
CATGGGAGCAGATAGNTGCTTGACGAAGAGGAAGAGCAAACAGTTTATTT
CAGTTCAGGATCAAAAAATGGGGAGAAAGAAACAAATGAATTACTCTTTG
ATCCCCAGGTTCACTACCAGAACACAAATCAACAAGTTCCTAACATGAAT
GGAATGGGGAATGGAATGGTGCAACAAATGACACAACAAATGCAAAGTTT
ATATATTCCAAATAATAAACCTCCTCAACAAAATGGCAATTACAATTTTC
AACACTACAACAACACTGACCATGTTAACAAACCTGTACATTCTAAACCA
TTAATGGATAGCTCAATTGTTTCAAAGTCAAAACTGAACCCGAACGCTCA
ACCCTTCAGTTTTAATCCGAACGCTCAAGTCTTTGTGCCGAAGGGGTTCA
CTACGAGGCCAACCAAAATGACATACGAACAAGCGAGTCATACTAAACCA
ATGCAACGATTCCCACATGGGAGCAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047104-exon-scaffold_121-1491911889:31533..31845 | TCONS_00047104-exon-scaffold_121-1491911889:31533..31845 | Clytia hemisphaerica | exon |
| TCONS_00047104-exon-scaffold_121-1510915933:31533..31845 | TCONS_00047104-exon-scaffold_121-1510915933:31533..31845 | Clytia hemisphaerica | exon |
| TCONS_00047104-exon-scaffold_121-1575043694:31533..31845 | TCONS_00047104-exon-scaffold_121-1575043694:31533..31845 | Clytia hemisphaerica | exon |
| TCONS_00047104-exon-scaffold_121-1491911889:37484..38787 | TCONS_00047104-exon-scaffold_121-1491911889:37484..38787 | Clytia hemisphaerica | exon |
| TCONS_00047104-exon-scaffold_121-1510915933:37484..38787 | TCONS_00047104-exon-scaffold_121-1510915933:37484..38787 | Clytia hemisphaerica | exon |
| TCONS_00047104-exon-scaffold_121-1575043694:37484..38787 | TCONS_00047104-exon-scaffold_121-1575043694:37484..38787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:31533..38787 + |
Blast
The following BLAST results are available for this feature:
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