|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047123 ID=TCONS_00047123|Name=TCONS_00047123|organism=Clytia hemisphaerica|type=transcript|length=5314bpRun BLAST on NCBI protein sequence of TCONS_00047123-protein >TCONS_00047123-protein ID=TCONS_00047123-protein|Name=TCONS_00047123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1326bp MFYSKSSLLLIVFLCFVYVESQTYHKGEVCGAGHSCPLDCVTYPGQFYCVRun BLAST on NCBI transcript from alignment at scaffold_122:116149..129250+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047123 ID=TCONS_00047123|Name=TCONS_00047123|organism=Clytia hemisphaerica|type=transcript|length=13102bp|location=Sequence derived from alignment at scaffold_122:116149..129250+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_122:116149..129250+ >TCONS_00047123 ID=TCONS_00047123|Name=TCONS_00047123|organism=Clytia hemisphaerica|type=CDS|length=39810bp|location=Sequence derived from alignment at scaffold_122:116149..129250+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047123 vs. Swiss-Prot (Human)
Match: FBLN3 (EGF-containing fibulin-like extracellular matrix protein 1 OS=Homo sapiens GN=EFEMP1 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 2.166e-32 Identity = 93/294 (31.63%), Postives = 136/294 (46.26%), Query Frame = 3
Query: 930 SYYCTCPVGYHDALYNGFFCVQINECIERRPSYKHNCSHLATCTDYDGGFNCDCNPGFRGDGYYCEDAIECEMTPPANPGYWCKPLADCINTFGSYECRCKLGYD--GNPDDCQDVNECKKINNCSPEAKCENTIGSYVCNCRTGYAGSG--FYCSDIDECENDPCHEQAVCGNTPGSYSCICKTGFRG-SGRWCEDINECAESNNCKTGERCVNYDGGYNCICPKIMPAQRPYLGTERDILDKVIMNLRNGSSEDWRHPLDYHAHIVRTIYQLVNRTYTYHFKEVTHSFFYTF 1796
S+ C GY + +N C I+EC + HNC C + G F C C PG++ G C D EC + P +C C+NT GS+ C+C G+ N C D+NEC N C+ +C N +GS++C C GY S C DIDEC Q C N PG +SC+C G++ R C+DINEC +N C+ E C NY GG+ C P+ P Q PY+ T ++ + + N + + Y +R+ + + + + + TF
Sbjct: 154 SHRIQCAAGYEQSEHN--VCQDIDECT----AGTHNCRADQVCINLRGSFACQCPPGYQKRGEQCVDIDECTIPP------YCH--QRCVNTPGSFYCQCSPGFQLAANNYTCVDINECDASNQCA--QQCYNILGSFICQCNQGYELSSDRLNCEDIDECRTSSYLCQYQCVNEPGKFSCMCPQGYQVVRSRTCQDINECETTNECREDEMCWNYHGGFRCY-PR-NPCQDPYILTPE---NRCVCPVSNAMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYANTINTF 426 HSP 2 Score: 85.5001 bits (210), Expect = 8.142e-17 Identity = 65/207 (31.40%), Postives = 97/207 (46.86%), Query Frame = 3
Query: 858 KNVNECENGWNRCDPLAKCTDTVDSYYCTCPVGYHDALYNGFFCVQINECIERRPSYKHNCSHLATCTDYDGGFNCDCNPGFR--GDGYYCEDAIECEMTPPANPGYWCKPLADCINTFGSYECRCKLGYDGNPD--DCQDVNECKKINNCSPEAKCENTIGSYVCNCRTGY-AGSGFYCSDIDECE-NDPCHEQAVCGNTPGSYSC 1460
++++EC G + C C + S+ C CP GY G CV I+EC P Y H C + G F C C+PGF+ + Y C D EC+ + + C N GS+ C+C GY+ + D +C+D++EC+ + + +C N G + C C GY C DI+ECE + C E +C N G + C
Sbjct: 172 QDIDECTAGTHNCRADQVCINLRGSFACQCPPGYQK---RGEQCVDIDECT--IPPYCHQ-----RCVNTPGSFYCQCSPGFQLAANNYTCVDINECDASN--------QCAQQCYNILGSFICQCNQGYELSSDRLNCEDIDECRTSSYLC-QYQCVNEPGKFSCMCPQGYQVVRSRTCQDINECETTNECREDEMCWNYHGGFRC 359 The following BLAST results are available for this feature:
BLAST of TCONS_00047123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.