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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047202 ID=TCONS_00047202|Name=TCONS_00047202|organism=Clytia hemisphaerica|type=transcript|length=2287bp
tgaaaatgttttgagaaaataaaaacataaaaataaattattttttttat
atcatGTCTTTGCGAGTGGAAAGTTATTGTGCGAAACAAGAGGAGCGAGA
ATGAGAGAGAATAAAAAATGGCCAACATCACACCTTTGCATTGTGTTGAA
TCTTGTAAGGTGTCAAAGCATAACATGTTTTCATTCTAAATactcaaata
tttcttttctagCAAGATAATTATTCAACAACCTAAGTCAACTGAAAGAG
AAAGTcgttaaaaaaaagattttctttatatattatgttattattatttt
tccaacTGTCTTGAGTGTTGTGGAGTTTTCTCAAATGAATTCTCTGGATC
TTGATGttcgaaaaaaatgaaataaaaagattgaTGTGGCTTCCACAAGA
CAGTTAAACAAGAAAATCAAAGTCTTCTACAAGGAGTGCATAACACGGAA
AATAAATCTTCACACATATATTACATAACAACTTCGAAACCTTTTTTTGC
ACACACAGCACAGAAATGACTGGTGAACACACTTCAGTAATCTACGGAAC
TCCATATCCTTACCGTCTGTTTGTGGGATGTTTACCACTGGAGGCTACAG
CTGAAGAACTTGGTACATTCTTCTCGCAGTACGGAAACGTCGTTGAAGCC
AAGGTTGTCCTCAATGAGAATGGTGTTTCCAAACGGTTTGGGTTTGTCAC
TTTCACAAATAAAGATGACGTGACGGATTTGATTAAAAACCGcactgttg
aatttcaaaagaaatggaTCAACGTTGGACCGGCTGTTAAGAAAAATCTT
GAAAATCAGACCAGCGTTGGTGTTGGTGGTGGTGATAATCCATCGAAGCC
TCGTTCCGCGACCTCAGTAACCGTCGTCACAAAGAAATCACCACCTACTA
CAACAATGGCACAACAACAGCAACACGGAAACACAAAACAATCGTTCTAT
CGTGGTCCACAACATATTCCAAAAACTGTCATTCGAAAATCGCCCACTGA
ACAACATTTTGAACCAGATTTTATGCGTGCTCTCACCAACGCTAACGCAT
ACCAACAACACAACCAACATTCAGAATTTTGTCCGCGATATCATCAAAAG
ATTGATGACTCATTCAGCTCAACATGGGGAATCTCCAACAAGAAGACTTC
CTATTGGTCTCAACCGCCCAAACGTCAAATGCAATCGAATGGCTCGTCTC
GATCATCCAGTGTTGATGCCATGGAAACTGCATTCAAAGCACCTCTCCTT
CCCTTCGAAGAGGATGCATCGCAAAGCCAATTCATgcctaaaatcgattt
ttcatctttcgatttttcttttgataacaATCCCTGGTCCCGACTCGGTG
GATGCGGCCCCATCGCGCCACCACCTGGTTTTCCTCAGCACAGCAACTGG
ATTCAAAAGAAGTAAGTGCCGAATGGTTTCTATTTTAAAATAATGGTACA
ACATCAAAGACCGTCAGGCTTTCCTAAAAAAGAAATGCTTTCAGCAATTC
CATTTCACGGATTATTTTTACAGTTttcgttttattatttttttggttca
CTCACACATGTCATGGGACGCTTGTGTCTGGCCTGTTCtgttttttggat
atttttaagttgcagattttatttattgattttaaaCTAATATAGTGTGT
TTACCCTTGTACATATAACCAACTCTAACcccttgttttattttttataa
taattatataCCTTAGAAGATTTTTTGTTAACGTTTGGAAAAAGTGAAga
ttttttagataatttaagGTTCAGAAGTTTTACGTTCTTTATATGGTTTT
ATTATCGTTTTATATAGTAATTAGTCCAAGTTTCAACATAAGGCAAGTTT
ACTactaatattttaaaatttttaatggTTCCAGCTGGGTTTTAACTACT
CGAAAGAAAGCTCTGaaagtcaaaaaagaatttgaaattttacttcTCAC
CTTACCTTAATGAAATAATTCTCTTTAATAGACTATACTTGGCTTAACCG
ATTTTAGTGTTTATGTTTTAGCAATTtagttccattttttgaaactattt
tatttcttaaTGTTTGTACATTTATGCAAGACTGTTTACCGTTATTAGGA
CTTTTTTACCTTaggtttaaaatatattgatgtTACTATTGAAGAATTGT
GAGTTCGTATTTTCTGCCCAAGTAATTTAGTATGCCACAACTTTATATAA
AGATAGCTGATATGATTTGAAGTGAATCGGATTAAAAATGTATAAGCATA
GCTTGATAAccgttcaaataaaaaaacgttATTTTCC Run BLAST on NCBI transcript from alignment at scaffold_123:305747..310246+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047202 ID=TCONS_00047202|Name=TCONS_00047202|organism=Clytia hemisphaerica|type=transcript|length=4500bp|location=Sequence derived from alignment at scaffold_123:305747..310246+ (Clytia hemisphaerica)
tgaaaatgttttgagaaaataaaaacataaaaataaattattttttttat
atcatGTCTTTGCGAGTGGAAAGTTATTGTGCGAAACAAGAGGAGCGAGA
ATGAGAGAGAATAAAAAATGGCCAACATCACACCTTTGCATTGTGTTGAA
TCTTGTAAGGTGTCAAAGCATAACATGTTTTCATTCTAAATactcaaata
tttcttttctagCAAGATAATTATTCAACAACCTAAGTCAACTGAAAGAG
AAAGTcgttaaaaaaaagattttctttatatattatgttattattatttt
tccaacTGTCTTGAGTGTTGTGGAGTTTTCTCAAATGAATTCTCTGGATC
TTGATGttcgaaaaaaatgaaataaaaagattgaTGTGGCTTCCACAAGA
CAGTTAAACAAGAAAATCAAAGTCTTCTACAAGGAGTGCATAACACGGAA
AATAAATCTTCACACATATATTACATAACAACTTCGAAACCTTTTTTGCA
CACACAGCACAGAAATGGTANCAAGAGAATCAGAGTCTTCTACAAGGAGT
GCATAACACGGAAAATAAATCTTCACACATATATTACATAACAACTTCTA
AACCTTTTTTTGCACACACAGCACAGAAATGGTAAGTTTTTCTGcatctt
tttgtcatttttttgtgagaaataaaaatattgcaggAAATTGAATTCAC
ATTGCTATCATTTCCTGATTTCAATCCGGATTTTAAGCAACGAAGTTCAA
TTTTCTGCAGTGTTTTTTTGTGCACTAAACTGATCTCCAATTTTATAATC
TATTTATTAGTTACATATTGACTTActgtttatagaacaatttaATAGGA
GTATTGAGGCTCGCAATGCCAaaagtagcctggatatccaagctcaaaat
ttaagaaaaaacaaaatttacctcaacatacaaagttcttaaattataga
gcttggtctccctagagaatgaaagNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctagagaatgaaagtgaaaa
cccatgtttcctagccaacccagggcagcaaaacagaaattaataaaaag
cagtcttacaagatctaaaactattaaaaagatccaaagattacaccaaa
gtccataaaaaagtttgcatgcattatcattaccaaccatgttttcttgg
aaaatgaacttgcctctgttttcttctttttgatgttttcatgtaacaga
aaactccatcttcactagcaagtggaggactatcctatttttgctttaga
attgctcaacaccgtgtagattggcccttacggttttagcgaagtgagcg
caagcaagcggacNATGGTAAGTTTTTCTGCATCTTTTTGTCAGATTTTT
gtgagaaataaaaatattgcaggAAATTGAATTCACATTGCTATCATTTC
CTGATTTCAATCCGGATTTTAAGCAACGAAGTTCAATTTTCTGCAGTGTT
TTTTTGTGCACTAAACTGATCTCCAATTTTATAATCTATTTATTAGTTAC
ATTGACTTActgtttatagaacaatttaATAGGAGTATTGAGGCTCACGA
TGCCAAAAGTTTTGAGCCATATCTGCAAACTGCAGCTAAACAAATTTAAT
ATGCAGATGGAGTTGGGTGAAAATTTTACTgtagaaaacaacaaaaactc
tTGTTTCTTTAGTATGTAGAACTGGTAGAACTATGgacttcttaaaaaaa
ctctgcGGGCATCATTATAAAACTAGATTCCTCtacaaaatctaaatttt
gtttACCCGTACTGGCGTAGTAAACAGTTGCATGCTTGCAAACACATTTT
ATAATACAtccaagatttttgaagcctttgggtcGGGCTTTGGATGTTCT
CAAATCTATAAATGTTCtcaatttcaccattttttttttggtgttttgtc
cattttccttagaaatcgcgcgtttttgagtccataaatctttaaaatat
tctcaactattttggctatcgaagccttgtgttcttatatagtttgttct
tatagaaagatAAACGTGTACTCGTATTATCACGCAAGAAAGAAGCCCCG
ATCACCTCATTACGCAAATTGCTTGGGAGGGTATTAATGATCTGTTTCTA
CATTATAAACATCAATAAATGATCATGAATCGGGTGAATGCAAAACgaca
acaaaaaagaacaaatcaaaAACTTCTAAAATGCATAAAATTTAACAGTT
TCATATTCAACTCTTTTCTtaagtaaaaatttttcttatttttggtgctt
tttaaaacttgttcttataaaaaattataggTAATCGGCCTTTGTGCGAA
GGATTGTATATGCAGAAAATCTTTCATTATAGACTGGTGAACACACTTCA
GTAATCTACGGAACTCCATATCCTTACCGTCTGTTTGTGGGATGTTTACC
ACTGGAGGCTACAGCTGAAGAACTTGGTACATTCTTCTCGCAGTACGGAA
ACGTCGTTGAAGCCAAGGTTGTCCTCAATGAGAATGGTGTTTCCAAACGG
TTTGGGTTTGTCACTTTCACAAATAAAGATGACGTGACGGATTTGATTAA
AAACCGcactgttgaatttcaaaagaaatggaTCAACGTTGGACCGGCTG
TTAAGAAAAATGTAAGAAGTTACTTTAACAGTACTCACAGTTTGTGCTTT
TAGCACAATTTTCCACGATTTTTGAATAATTCTAGAAGATGTATTCATTC
TCGCATAGAATCTTTCTGTTTGAAAGCATTACGGCCGAAAATAAGTTAcc
ttaaaatattaagaactagCGACGGCAACATTGAACTGTTTTTTATCGCG
GTTGCCATATTTTGATTTCGTCACTTCTCATTTTCAAGTCTCTTTTTTCT
TCATACGAAGTGCTGCGAGCctaaaaaagagatttttgcGACTATATTTT
TTCCATCCAGCTTGAAAATCAGACCAGCGTTGGTGTTGGTGGTGGTGATA
ATCCATCGAAGCCTCGTTCCGCGACCTCAGTAACCGTCGTCACAAAGAAA
TCACCACCTACTACAACAATGGCACAACAACAGCAACACGGAAACACAAA
ACAATCGTTCTATCGTGGTCCACAACATATTCCAAAAACTGTCATTCGAA
AATCGCCCACTGAACAACATTTTGAACCAGATTTTATGCGTGCTCTCACC
AACGCTAACGCATACCAACAACACAACCAACATTCAGAATTTTGTCCGCG
ATATCATCAAAAGATTGATGACTCATTCAGCTCAACATGGGGAATCTCCA
ACAAGAAGACTTCCTATTGGTCTCAACCGCCCAAACGTCAAATGCAATCG
AATGGCTCGTCTCGATCATCCAGTGTTGATGCCATGGAAACTGCATTCAA
AGCACCTCTCCTTCCCTTCGAAGAGGATGCATCGCAAAGCCAATTCATgc
ctaaaatcgatttttcatctttcgatttttcttttgataacaATCCCTGG
TCCCGACTCGGTGGATGCGGCCCCATCGCGCCACCACCTGGTTTTCCTCA
GCACAGCAACTGGATTCAAAAGAAGTAAGTGCCGAATGGTTTCTATTTTA
AAATAATGGTACAACATCAAAGACCGTCAGGCTTTCCTAAAAAAGAAATG
CTTTCAGCAATTCCATTTCACGGATTATTTTTACAGTTttcgttttatta
tttttttggttcaCTCACACATGTCATGGGACGCTTGTGTCTGGCCTGTT
CtgttttttggatatttttaagttgcagattttatttattgattttaaaC
TAATATAGTGTGTTTACCCTTGTACATATAACCAACTCTAACcccttgtt
ttattttttataataattatataCCTTAGAAGATTTTTTGTTAACGTTTG
GAAAAAGTGAAgattttttagataatttaagGTTCAGAAGTTTTACGTTC
TTTATATGGTTTTATTATCGTTTTATATAGTAATTAGTCCAAGTTTCAAC
ATAAGGCAAGTTTACTactaatattttaaaatttttaatggTTCCAGCTG
GGTTTTAACTACTCGAAAGAAAGCTCTGaaagtcaaaaaagaatttgaaa
ttttacttcTCACCTTACCTTAATGAAATAATTCTCTTTAATAGACTATA
CTTGGCTTAACCGATTTTAGTGTTTATGTTTTAGCAATTtagttccattt
tttgaaactattttatttcttaaTGTTTGTACATTTATGCAAGACTGTTT
ACCGTTATTAGGACTTTTTTACCTTaggtttaaaatatattgatgtTACT
ATTGAAGAATTGTGAGTTCGTATTTTCTGCCCAAGTAATTTAGTATGCCA
CAACTTTATATAAAGATAGCTGATATGATTTGAAGTGAATCGGATTAAAA
ATGTATAAGCATAGCTTGATAAccgttcaaataaaaaaacgttATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047202-exon-scaffold_123-1491911889:305747..306236 | TCONS_00047202-exon-scaffold_123-1491911889:305747..306236 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1510915933:305747..306236 | TCONS_00047202-exon-scaffold_123-1510915933:305747..306236 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1575043694:305747..306236 | TCONS_00047202-exon-scaffold_123-1575043694:305747..306236 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1491911889:306350..306377 | TCONS_00047202-exon-scaffold_123-1491911889:306350..306377 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1510915933:306350..306377 | TCONS_00047202-exon-scaffold_123-1510915933:306350..306377 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1575043694:306350..306377 | TCONS_00047202-exon-scaffold_123-1575043694:306350..306377 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1491911889:308179..308457 | TCONS_00047202-exon-scaffold_123-1491911889:308179..308457 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1510915933:308179..308457 | TCONS_00047202-exon-scaffold_123-1510915933:308179..308457 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1575043694:308179..308457 | TCONS_00047202-exon-scaffold_123-1575043694:308179..308457 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1491911889:308757..310246 | TCONS_00047202-exon-scaffold_123-1491911889:308757..310246 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1510915933:308757..310246 | TCONS_00047202-exon-scaffold_123-1510915933:308757..310246 | Clytia hemisphaerica | exon |
| TCONS_00047202-exon-scaffold_123-1575043694:308757..310246 | TCONS_00047202-exon-scaffold_123-1575043694:308757..310246 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:305747..310246 + |
Blast
The following BLAST results are available for this feature:
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