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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047210 ID=TCONS_00047210|Name=TCONS_00047210|organism=Clytia hemisphaerica|type=transcript|length=3995bpRun BLAST on NCBI protein sequence of TCONS_00047210-protein >TCONS_00047210-protein ID=TCONS_00047210-protein|Name=TCONS_00047210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=749bp MASVGNGSGMFNKTRPKIPEIGVDLNKPEQTFKFVMALCAIIFILAVAFFRun BLAST on NCBI transcript from alignment at scaffold_123:352999..362054+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047210 ID=TCONS_00047210|Name=TCONS_00047210|organism=Clytia hemisphaerica|type=transcript|length=9056bp|location=Sequence derived from alignment at scaffold_123:352999..362054+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_123:352999..362054+ >TCONS_00047210 ID=TCONS_00047210|Name=TCONS_00047210|organism=Clytia hemisphaerica|type=CDS|length=29250bp|location=Sequence derived from alignment at scaffold_123:352999..362054+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047210 vs. Swiss-Prot (Human)
Match: CSCL2 (CSC1-like protein 2 OS=Homo sapiens GN=TMEM63B PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.838e-16 Identity = 153/733 (20.87%), Postives = 298/733 (40.65%), Query Frame = 1
Query: 280 KSWFSWVTLSFKTKDEDIYVFAGFDALVFIRFLRLMLKFALCTMPYGLIVLLPLNVVGGNKLDDG---LNKLSMSNIVHESKHLWAHWVAVWFYSLLVCYFCWSEWKVYIQYRQRYLKKGLHHQFALLVQEIPDELNEDHSLYEFMDKLFPN-------KISSVHVVRDLDNWRSLVKKHDKFLLNWENAKFYEESGKARRRIRKSCC----GDKVDAITYYEKELELIQEDLFTEKSKDGKEVLNCAFIVFKSIKTKELALK--SVWRKESMTFSKYPAPQSSE-----IKWRALKYPYTVR---KMLELVGFI----------TVFALVLFWAVPITFISTLTKLESLSKEFKWLDSILAGSSKMFISFLQGVLPVILIAVFYLILPYILFFIATIQGLFSNSRCAEMVFKCLFVFQTF-------------NTFFIYILSGSVLQNLSQIVQEPFKIPSLLAKSLPSQSGFYVNYLAITSFVGLAIELTRIWPLIRISVTLKWFAKTSRQKLEAWKPKRAEYE--VMYSQALLFFLIGLSFSVLSPIIXXXXXXXXXXXXXXWMYQLLHVYIP----DYDHGGRFWTFVFNRMMVC--VLVFQLLMVGVFLLKEVWFAAVFLAPLIIVTVAFWLYINETYLPYSRY---LTVEETIGLKGAEQ-----------RFLEEVKNRYILDQTVPEVFELSTDKQPSS-----EDYIPIDSINNPDTDEENPQD 2256
+ SW+T F+ KD++I G DA+ ++ F R ++ + + ++LP+N G+ L++ + +++N+ + LW H + Y LL Y ++Y++ L K L + I + E + + ++ +PN +V + LD R ++ + N ++ + + CC ++V+AI YY K + ++ED EK K ++ L AF+ F + + LK +V + + T P P S W P + L + GFI +F L+ F P I+T+ K +++K ++L++ + + P +L+ F +LP I+++ A + ++ S + F F + FF ++ L + + F LP F+VNY+ ++F+G A++L RI L+ + L A+++ ++ + + E++ Y+ + F + +++S+ PIIVPF ++Y ++V Y L + Y+P H G V ++ +L F + G FL F V L I++ + + + YL Y T +T+ + + +++ +V +D S D+ PSS E +P D++ DTD ++ +D
Sbjct: 123 NGFCSWLTAIFRIKDDEIRDKCGGDAVHYLSFQRHIIGLLVVVGVLSVGIVLPVNF-SGDLLENNAYSFGRTTIANLKSGNNLLWLHTSFAFLYLLLTVY-SMRRHTSKMRYKEDDLVKR-----TLFINGI-SKYAESEKIKKHFEEAYPNCTVLEARPCYNVARLMFLDAERKKAERGKLYFTNLQSKENVPTMINPKPCGHLCCCVVRGCEQVEAIEYYTKLEQKLKEDYKREKEKVNEKPLGMAFVTFHNETITAIILKDFNVCKCQGCTCRGEPRPSSCSESLHISNWTVSYAPDPQNIYWEHLSIRGFIWWLRCLVINVVLFILLFFLTTPAIIITTMDKF-NVTKPVEYLNNPI----------ITQFFPTLLLWCFSALLPTIVYYSAFFEAHWTRSGENRTTMHKCYTFLIFMVLLLPSLGLSSLDLFFRWLFDKKFLAEAAIRFECVF---------LPDNGAFFVNYVIASAFIGNAMDLLRIPGLLMYMIRL-CLARSAAERRNVKRHQAYEFQFGAAYAWMMCVFTVVMTYSITCPIIVPFGLMYMLLKHLVDRYNLYYAYLPAKLDKKIHSGAVNQVVAAPILCLFWLLFFSTMRTG-FLAPTSMFTFVVLVITIVICLCHVCFGHFKYLSAHNYKIEHTETDTVDPRSNGRPPTAAAVPKSAKYIAQVLQDSEVDGDGDGAPGSSGDEPPSSSSQDEELLMPPDALT--DTDFQSCED 823 The following BLAST results are available for this feature:
BLAST of TCONS_00047210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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