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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047212 ID=TCONS_00047212|Name=TCONS_00047212|organism=Clytia hemisphaerica|type=transcript|length=3050bpRun BLAST on NCBI protein sequence of TCONS_00047212-protein >TCONS_00047212-protein ID=TCONS_00047212-protein|Name=TCONS_00047212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MDKLVYQQSDVFVHTAVPGSTFHDDIIRGTLTIYSDGEGTFVEWRPSTGFRun BLAST on NCBI transcript from alignment at scaffold_123:382335..413937+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047212 ID=TCONS_00047212|Name=TCONS_00047212|organism=Clytia hemisphaerica|type=transcript|length=31603bp|location=Sequence derived from alignment at scaffold_123:382335..413937+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_123:382335..413937+ >TCONS_00047212 ID=TCONS_00047212|Name=TCONS_00047212|organism=Clytia hemisphaerica|type=CDS|length=26586bp|location=Sequence derived from alignment at scaffold_123:382335..413937+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00047212 vs. Swiss-Prot (Human)
Match: TBC15 (TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2) HSP 1 Score: 394.045 bits (1011), Expect = 1.062e-122 Identity = 224/639 (35.05%), Postives = 349/639 (54.62%), Query Frame = 2
Query: 212 KLVYQQSDVFVHTAVPGSTFHDDIIRGTLTIYSDGEGTFVEWRP--------------STGFTPVEYEVHPVFSG----------SIEYGVVTT----QEPLSIASSSKETNQPPPVPYKITFNVEQIHSIRRSDPKLAWSYVLFYMKDHRSQPALHFHNGGIQEMISCLQRYIWLTRSSLNSRLFIVKERDDAMQSAVNQFELFTDKPVGAI------------------SKLFNNTFYDTLNNFSKVTNYVLSGMGQLD--LQERRPERSANGGND--DEFEFLHPDEP------EIDLGTIIPVARGDPLQPEEWCAFFNNDGAITHAHKLKERIFRGGVHEDIKCEAWKYLLGFYKFDSTYEERGVRSKKLRDDYNRMKTQWESISVEQEKKFQEFSQRKQLVEKDVTRTDRKLEYFAGDDNPNVKKLFNVLMTYCMYNFDLGYVQGMSDLLAPILRLVEDEVETFWCFAGLMQMEERMFEISQDLMKTQLECLGKLIKFLYPNFWAFLEKKEAQNLYFCFRWLLISFKREFVYKDVMTLWEALWTQEYSMNFKLFICCAILEHEKDEMMKKNFDFNDILKHTNKLSCQMDVSFVLSRAESIVLQLKQADDLPDHIKDLI-TQSQDGDNTEDDTG 1957
K++Y+Q V++H++ + D +I G L + V+WRP + VE+ P G E+ +V T ++P + + N + F++ + SI+++ + WSY++F +KD PALHFH G + +I L++Y+ L S + R +V ++ ++ + FE D+P + K+ + + T+ FSKVTNY+ + D +R P A+ +D + +EP IDLG V R +P+ EEW +++G I + +K+ IFRGG+ ++ +AWK+LLG++ +DST EER K+ D+Y RMK QW+SIS EQEK+ + L+EKDV RTDR +++ G DNP + L ++LMTYCMY+FDLGYVQGMSDLL+P+L ++E+EV+ FWCFA M + FE MKTQL L L++ L F ++LE +++ LYFCFRWLLI FKREF + D++ LWE +WT+ NF L +CCAILE EK ++M+K++ FN+ILKH N+LS ++DV +L +AE+I LQ+ + +LP + +++ Q + + D G
Sbjct: 10 KIIYEQEGVYIHSSCGKTNDQDGLISGILRVLEKDAEVIVDWRPLDDALDSSSILYARKDSSSVVEWTQAPKERGHRGSEHLNSYEAEWDMVNTVSFKRKPHTNGDAPSHRNGKSK--WSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQGDSKLLIESLEKYVVLCESPQDKRTLLVNCQNKSLSQS---FENLLDEPAYGLIQAGLLDRRKLLWAIHHWKKIKKDPYTATMIGFSKVTNYIFDSLRGSDPSTHQRPPSEMADFLSDAIPGLKINQQEEPGFEVITRIDLGERPVVQRREPVSLEEWTKNIDSEGRILNVDNMKQMIFRGGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLIEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQMQGMKTQLIQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWTELPCTNFHLLLCCAILESEKQQIMEKHYGFNEILKHINELSMKIDVEDILCKAEAISLQMVKCKELPQAVCEILGLQGSEVTTPDSDVG 643 The following BLAST results are available for this feature:
BLAST of TCONS_00047212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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