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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047250 ID=TCONS_00047250|Name=TCONS_00047250|organism=Clytia hemisphaerica|type=transcript|length=1674bp
aaaaaatggaaattcaaaaacttttcacttaaaatcaaatttaatatatt
tttgtaccaaaagattttcaatgaaactcacgtgtaaattttaagtttaa
aataTAGTTCTGATGGGTTTCATAGTCATCCATGACTGATTAAGATCGAA
ACTACATATCACCTTTGATCCCGCAAACCGAGAGAGCATCATTGCTCAAC
TTGCTGATCTGGTCCGCCTTTTCTTTTCTGTTGAGGTCAGCTGGTCCTTG
GACACGTTTGCTGCTGGTACTTGCCCTCACCCCCTGTAGAAATGTCATTC
TAAGATCGgatgGAGAACTGCATGAAAGAGTGTCGCGTGCCACTCCTGTG
GAATGCCAATGGAAGCATTGAGGTCATCCAACAAGATGATTACTCTGCTG
AAGAAGCTGAAAAAATACTGAAGATCCTAGAAGGAGGGTACAGTGATGAC
AAACCTCTTCCTAAATCATGTGCTCCATCACCCAGTCCATCCATAGATTT
AAGCAATGATCGAGACTATCATGAAAGAATGTTATCCTTAGACGAAACTT
CAAAGAACCATCATCCTCACAATCACCTTACTTCTTCATTATGTTTGGAC
GAAATTAACTATCacatcaacaaaagaaatcttgtACCAGCAGCAATCAC
ATCTCGTACATTTCgtccaaattttagtcatttaaAACAGCATGAATCGC
GTCGTCTtcctcaacaacaacaacatcaaaCACAACAGCATGTTCAAGGC
TCTCCTATCGATCGTGTCTACAGCTGTCCCATATGCGCCAAGAAATTTAG
TCGAAAATTTAACTTGAATACACACATCAAATGTGTTCACAGCGATGACA
AAGATTATATATGTCAATTTTGCCAGCGTGCTTTCAACCACAGCAGTAAC
CTTAGAAAGCACATAAAAACGGTGCACGGGGAAGAAAAAAGGCTTCCATG
TCCTGAATGTAAGAAACCATTCAAACACAGTGAAGCCTTGAAGAGTCATC
TTAGAGTGATTCAtgggaaaaattctttttaaaggactttctttcttatt
tttctactaTGCTACAAATGAAACATAgtaatatgaaatttaactaCACA
TATATACAATACGTGATTTTAAATCGGATATATCTTTTTACTAATTTTGA
TAGCATTTTcttctataaaaagaaaaatttagtttAGTTCTTGTTTACTG
TTTTTCCGAATTTAACgaaatcaattatttttttatatgattttactttt
ctatttttagaatttttaggtGCTGTATCCCAAATCTTTTTTAACtatta
ttttttataatattatttaccaacttattaaaaaaaacattaaacagAAA
ATGCTAGGTACAAAGTGGGCTTTACCTTGGCCTTTTTGCCTGAAATATTC
ATCAGTGACTTGATGAATGAACTGATTAAATTCAGAcaagaagaaaatta
agaaaGGCTAAGGTAGGGTCCACTAGATTATTATTTacgaaaaaattata
aattgaaaaaccaaaagtgatattttaatagaatttttttgttgtcattt
tttacaacaacaatttttgagattttaggttttattaTTTTGTAAGGCTC
CTTTTTTGGTGCAAAGCATTTAGTTTTTGATTCAGACTACTAAAATAGAA
AGAAATTTAGAGGCAATAATGGAt Run BLAST on NCBI protein sequence of TCONS_00047250-protein >TCONS_00047250-protein ID=TCONS_00047250-protein|Name=TCONS_00047250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MENCMKECRVPLLWNANGSIEVIQQDDYSAEEAEKILKILEGGYSDDKPL
PKSCAPSPSPSIDLSNDRDYHERMLSLDETSKNHHPHNHLTSSLCLDEIN
YHINKRNLVPAAITSRTFRPNFSHLKQHESRRLPQQQQHQTQQHVQGSPI
DRVYSCPICAKKFSRKFNLNTHIKCVHSDDKDYICQFCQRAFNHSSNLRK
HIKTVHGEEKRLPCPECKKPFKHSEALKSHLRVIHGKNSF Run BLAST on NCBI transcript from alignment at scaffold_123:487058..493293- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047250 ID=TCONS_00047250|Name=TCONS_00047250|organism=Clytia hemisphaerica|type=transcript|length=6236bp|location=Sequence derived from alignment at scaffold_123:487058..493293- (Clytia hemisphaerica)
AAAAAATGGAAATTCAAAAACTTTTCACTTAAAATCAAATTTAATATATT
TTTGTACCAAAAGATTTTCAATGAAACTCACGTGTAAATTTTAAGTTTAA
AATATAGTTCTGATGGGTTTCATAGTCATCCATGACTGATTAAGATCGAA
ACTACATATCACCTTTGATCCCGCAAACCGAGAGAGCATCATTGCTCAAC
TTGCTGATCTGGTCCGCCTTTTCTTTTCTGTTGAGGTCAGCTGGTCCTTG
GACACGTTTGCTGCTGGTACTTGCCCTCACCCCCTGTAGAAATGTCATTC
TAAGATCGGTAAGTAATGTTTCTTTCACAGGGGGTGTTTTCCACAACCCT
GACGCTTTTTTTGCTAATAGGTCACTGAAATTTTTATTGAGACTTTGTTT
GAAAGTTTTTGACTTTTATTATATGGATTATAATGCAATGATGGGCAGTT
CCAGTTGACTACAGGACAGGCTTGGCTAGTTGGTTGAGTGTGGTTAGATT
GGCTAGGGTTGGTTTTAGTGAGGCTAGTTGTTGGAAGACTAGTTGGTTGG
TGTTACATTTGGTGATGATGTTTTAGTAGTTGTCTAATTGGTTTTGGCTG
TTGTGTTGGCAGGTGTTGCAAGTAGGTGCAAGCCTAAGTGCAGAGGTAGT
TTTTGCTGGTTGGCTAGCTCCATTCTAGCATTGTTTAGTTTTATTATATC
ATTGGTCATAAAGCTTTGTATCATATTTACTGGATGGTACAATCATGAAA
AATAAAATACTACTATACTACTACTACTACCAACTGTTCAAAATATTTCT
TGCAGGGATTATTCAATAGTCGCCCTAAGACAGTTAGTCACACTAGCTTC
CCGCCAAAATGCGTATCAAAGATTAATGCTGCAAAAGCGCTATATCGTTT
ACTTGACTCTCAAGCAAAAAAATGCACCGCAAAACTTCTAAAGGGATTCA
TGAAAAAATAACCCCGCCGCACTTTTTAATGAATTTAACTTTTTCAAAAA
CTTTGAGAAATTGCCTAAAATTTGAGCCATAGATGAAAAAATTTGAGCCA
AGCCAACCTTGAAAACTAATTTGAAGATCAACTTCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCTGCACGT
TTTATTTTGTTTCAAACTTTCAAGTTTTAATTAATTGTCTTGCGAACTTG
ATTCAGGTAACTCTCATCCTTGTTGTGCAAATACATCCTGTAGATAACTG
ATGCTGTTTTTCCTGAAAGCTAGATTTCCTAGTGTGACTAACTGTAAGAT
ACTTATACTTATTATATTATTTGGTCATCCTTATACACTTGCCTAATTCC
GGACAGTTTTCAAAGGACCCTCCTGGCGCTCCGGAAACTTTCGGAATTTT
CCAGAGCAGCTAAAAAAACACCATTTTTATCTCCGGAAAGTTCCAGAGCT
CTTCTGGAGCAAGTGATTCTTAACACAGCTCCAGAGTTCCGGTGCAGATC
ACACCGGAAGTGCTCCGGAATCTTTTTTGTTTTTGTCTTTGTTAAGTTTC
TTTGCTTGTTCGTGCATCTCCTCTATCTTTTTCCGTTCATTGATTGTGAA
ATCTTCAGTGATACTTATATACCTGAAAGAAACGTTTCTTTCAGGTACCG
AATTATGTCATATTTTCTTCTTCTTCCTTATCTGGGCCTGAATATTCGAC
AAACCCGTGAACGATGATATTCAGTTTTCTAGAGTCAATTTCTCTCTTTT
CACTTTCTTCCTTCCGTTTTTGTTCCTCGGCAGATCTTAAGTCTCCTTTT
TGCTTCTTAGCAATTTCTTTAATGTCTCATTATTTCTGCTGTGTGCTTTG
TTTCCTCCTTTATCATGCTTCTTGTCTTTTCCTCCATTTCTTGTAGTTTT
CCTGCCAGAAGAGTTTTGAGATCATTTTTGATGGAATCACGGGTTTAACA
CTCTAGTGTTGGTGTGGACCTTGTTGTTCAGTTTTTGTATGATGTCGTCT
TTTTTTTCCAAGTTCATTTTGCATCATATATTGAGTGTTTTTCCCACTGT
ATTTCTCAGGTTCTTCGTTATTCGGACACAGTTTGAACATAAGTAATGAT
CGTTATAGGATGTCACGAATATTTGTAGTTGATACAAAGGTAGCTGCGTG
CACTCATAATGAACTGATCTTTTACATTTTTTGCATTCTAAGCGATTCAG
GTCTTCGTCATTGGTACATCTTGACAGGGTGCAGCTTGAGATGGTGAAGC
TGCTTCGAAAGGCTGATTTTTATCCATTTTGATGTTATTTTCATGAATTT
CGATGTTTTTATTTGTTTTCAGCCATTTTTTCGAAGAGCATTGCAAAAGC
ATCTTATCTAAATGACGTCAAATAAAAACTGGTACTTGTCACTTTTCAGC
AGTAATCGTGAAACTTTGTGATGCCAGCATNTAGTGAGGTCAGGTAGCAC
ATAAAACGTAAGAATACTTCAGATTGTGATTAAAGCATGAAATTTGGCAC
AGATGATCCTTAGAGGGTCTAAAACTTAATTTTAAACAGTAACACCAAAT
TTTGCTACGTGGCCACCTGCCAGATGGCGTCATCAGGTGGCTGGGCAAAA
AATTATTTTTTTGAAAATATTCAAAATCTGATGGTTCCAGTGGAAAGAGC
ATGAAATGCTGATAAAAATTGAGGTATAAAACATGCCTTGAAAATCTTCC
TATCAAAAGTTATGGACGTTGAAAGTTTTTTGATGACGTCATCAAAAGCC
TTTTCAGGCAAAACTTAAAAACCTCGTAATTTTGGTACAAATTGACCAAA
TTTCATGTTTTATACATGAATTCATATCAAAATTCATTGCTTTTTCCGAT
TCCGATGTTTAAATTGAATTAAAAGCTTTAAATCCTACAGAATACTAAAA
CTTACATTTTGAGCTTTACAAGGCAAATCCGAGGGCAAATCAACGCAGCG
TTCTCCCTTCAGGAGCACAGTGTACAACCAACTATTTTTTGTTGATGTTT
TAAGCCTTCCTATGTTGTTTAGACCCAAGCATCAGATGGAACTTCAAATT
TTGACATGGATTCATGTATAAAACACTAAAATTGGTCAACTATTTCCGTT
ATTACGGGATTTTAGGTTTTGCCTGAAAAGGCTTATGATGACGTCATCAC
AAAACTTTAAACCTTCATAACTTTTAATAGGAAGATTTTGAAAGCATGTT
TTATACCTTGATTTTCATCAGCATTTCATGCTCTTTCCGCTGATACCATC
AGAATTTAAATATTTTCAAAAAAATAAATTTTTGCTAAGCCACCTGATGA
CGTCATCTGCCAGGTGGCCAGATGGCAAAATTTGGTGTTACTGTTTAAAA
TTAAGTTTTAGACCCTCTAAGGATCATCTGTGCCAAATTTCATGCTTTAA
TCACCATCTGAAGTATTTTTGTTCTAACAGACCTCACTACTTATCTAAAT
GATGTCAAATAAAGACTGGTACTTGTCACTATTCAGCAGTAATCGTGAAA
CTTTGTGATGCCAGCATCACCTTACTTACCTTTAAGTACCTTTTGGTCTC
TATTAGACGCTGCCCTACCTTTCCAGAATTTGGGCTGTTGTGGGTACTAA
CTGCTGTAAGGAATGGTGTACTAAAAGATTTCACCTCAATCAAATGCAAG
TAGTAGGGTACTAACTGTTCAAGGCTGGTCTTATTTAGATCAAGAATTTA
CAGCTTTTTACCATTTAGTAGAGGCTTTTTGAAGCTTTACTGAGGCTTTA
TCAAATCAGGTCAAATCTTAAATCCCATGTAGTCAAAGATAGCTTGTTTC
TGCTTGTTGGACAAACTTTACTTAACATGTTTAGCCCTATAGCTTTTACC
ATATATGTTGGCTTTTTATATAAGTCAAGTAAAGAAAAATTACCAAGTTC
AGTTTCAACCCAAGGGCTGCCTAGGGTATTAACAGGTTTCAAATAGTGCT
TAGCTTGAGTATCGGCCACTTAGTACTACGGGGTACTATTAACAGGGCCC
ACGCCATTTTTATTGATTGATAATCGATACAAAATACCAATAGATTAATA
ATTGATGACATCGATAACTAATTGATTGCATCTATTGGATCGATAACAAT
TGATAGTTAATCGAGGTAAAAAAATTGTGAATATAGATTCGTTATCGATT
ATCAATTTTAGTTGATGACTAATGGATCGAATAATATAGATTATTTATTG
TTTTAAATCGATGATTGATTTTATCGATTACGTCAGCCTTTGTACATTCG
TTCATCCTTTCATTTGCTTTTCTTGGGATTTCTCGGGAGTAGTCCATTAT
TGATTTTTAGCATAGTGACACAAAATGACAGTACCTAAAAAGTGATGGGG
CCTGATTTTCAAGAAAAAAAATTTGAAGTTCCTTATTGACATTATTTACT
TTATCCAGTTTTTAATTTAAGGAGTTTGGATTACAAAAATCCCTTTCACA
ACTTGAAGCTCCCTTCAGAAAGCTACCCTTGCATTGCTCCACTCGGGGCC
AAACTGAATATTTTGTATTCAATTCTCTAATTTTGATAAAAGTTATTTTT
TTTATTTTTCAGGATGGAGAACTGCATGAAAGAGTGTCGCGTGCCACTCC
TGTGGAATGCCAATGGAAGCATTGAGGTCATCCAACAAGATGATTACTCT
GCTGAAGAAGCTGAAAAAATACTGAAGATCCTAGAAGGAGGGTACAGTGA
TGACAAACCTCTTCCTAAATCATGTGCTCCATCACCCAGTCCATCCATAG
ATTTAAGCAATGATCGAGACTATCATGAAAGAATGTTATCCTTAGACGAA
ACTTCAAAGAACCATCATCCTCACAATCACCTTACTTCTTCATTATGTTT
GGACGAAATTAACTATCACATCAACAAAAGAAATCTTGNGTACTACTTCA
TTATGTTTGGACGAAATTAACTATCACATCAACAAAAGAAATCTTGTACC
AGCAGCAATCACATCTCGTACATTTCGTCCAAATTTTAGTCATTTAAAAC
AGCATGAATCGCGTCGTCTTCCTCAACAACAACAACATCAAACACAACAG
CATGTTCAAGGCTCTCCTATCGATCGTGTCTACAGCTGTCCCATATGCGC
CAAGAAATTTAGTCGAAAATTTAACTTGAATACACACATCAAATGTGTTC
ACAGCGATGACAAAGATTATATATGTCAATTTTGCCAGCGTGCTTTCAAC
CACAGCAGTAACCTTAGAAAGCACATAAAAACGGTGCACGGGGAAGAAAA
AAGGCTTCCATGTCCTGAATGTAAGAAACCATTCAAACACAGTGAAGCCT
TGAAGAGTCATCTTAGAGTGATTCATGGGAAAAATTCTTTTTAAAGGACT
TTCTTTCTTATTTTTCTACTATGCTACAAATGAAACATAGTAATATGAAA
TTTAACTACACATATATACAATACGTGATTTTAAATCGGATATATCTTTT
TACTAATTTTGATAGCATTTTCTTCTATAAAAAGAAAAATTTAGTTTAGT
TCTTGTTTACTGTTTTTCCGAATTTAACGAAATCAATTATTTTTTTATAT
GATTTTACTTTTCTATTTTTAGAATTTTTAGGTGCTGTATCCCAAATCTT
TTTTAACTATTATTTTTTATAATATTATTTACCAACTTATTAAAAAAAAC
ATTAAACAGAAAATGCTAGGTACAAAGTGGGCTTTACCTTGGCCTTTTTG
CCTGAAATATTCATCAGTGACTTGATGAATGAACTGATTAAATTCAGACA
AGAAGAAAATTAAGAAAGGCTAAGGTAGGGTCCACTAGATTATTATTTAC
GAAAAAATTATAAATTGAAAAACCAAAAGTGATATTTTAATAGAATTTTT
TTGTTGTCATTTTTTACAACAACAATTTTTGAGATTTTAGGTTTTATTAT
TTTGTAAGGCTCCTTTTTTGGTGCAAAGCATTTAGTTTTTGATTCAGACT
ACTAAAATAGAAAGAAATTTAGAGGCAATAATGGAT Coding sequence (CDS) from alignment at scaffold_123:487058..493293- >TCONS_00047250 ID=TCONS_00047250|Name=TCONS_00047250|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_123:487058..493293- (Clytia hemisphaerica)
ATCAACAAAAGAAATCTTGTACCAGCAGCAATCACATCTCGTACATTTCG
TCCAAATTTTAGTCATTTAAAACAGCATGAATCGCGTCGTCTTCCTCAAC
AACAACAACATCAAACACAACAGCATGTTCAAGGCTCTCCTATCGATCGT
GTCTACAGCTGTCCCATATGCGCCAAGAAATTTAGTCGAAAATTTAACTT
GAATACACACATCAAATGTGTTCACAGCGATGACAAAGATTATATATGTC
AATTTTGCCAGCGTGCTTTCAACCACAGCAGTAACCTTAGAAAGCACATA
AAAACGGTGCACGGGGAAGAAAAAAGGCTTCCATGTCCTGAATGTAAGAA
ACCATTCAAACACAGTGAAGCCTTGAAGAGTCATCTTAGAGTGATTCATG
GGAAAAATTCTTTTTAAATGGAGAACTGCATGAAAGAGTGTCGCGTGCCA
CTCCTGTGGAATGCCAATGGAAGCATTGAGGTCATCCAACAAGATGATTA
CTCTGCTGAAGAAGCTGAAAAAATACTGAAGATCCTAGAAGGAGGGTACA
GTGATGACAAACCTCTTCCTAAATCATGTGCTCCATCACCCAGTCCATCC
ATAGATTTAAGCAATGATCGAGACTATCATGAAAGAATGTTATCCTTAGA
CGAAACTTCAAAGAACCATCATCCTCACAATCACCTTACTTCTTCATTAT
GTTTGGACGAAATTAACTATCACATCAACAAAAGAAATCTTGTACCAGCA
GCAATCACATCTCGTACATTTCGTCCAAATTTTAGTCATTTAAAACAGCA
TGAATCGCGTCGTCTTCCTCAACAACAACAACATCAAACACAACAGCATG
TTCAAGGCTCTCCTATCGATCGTGTCTACAGCTGTCCCATATGCGCCAAG
AAATTTAGTCGAAAATTTAACTTGAATACACACATCAAATGTGTTCACAG
CGATGACAAAGATTATATATGTCAATTTTGCCAGCGTGCTTTCAACCACA
GCAGTAACCTTAGAAAGCACATAAAAACGGTGCACGGGGAAGAAAAAAGG
CTTCCATGTCCTGAATGTAAGAAACCATTCAAACACAGTGAAGCCTTGAA
GAGTCATCTTAGAGTGATTCATGGGAAAAATTCTTTTTAAATGGAGAACT
GCATGAAAGAGTGTCGCGTGCCACTCCTGTGGAATGCCAATGGAAGCATT
GAGGTCATCCAACAAGATGATTACTCTGCTGAAGAAGCTGAAAAAATACT
GAAGATCCTAGAAGGAGGGTACAGTGATGACAAACCTCTTCCTAAATCAT
GTGCTCCATCACCCAGTCCATCCATAGATTTAAGCAATGATCGAGACTAT
CATGAAAGAATGTTATCCTTAGACGAAACTTCAAAGAACCATCATCCTCA
CAATCACCTTACTTCTTCATTATGTTTGGACGAAATTAACTATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047250-exon-scaffold_123-1575043694:492986..493293 | TCONS_00047250-exon-scaffold_123-1575043694:492986..493293 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1575043694:488175..488481 | TCONS_00047250-exon-scaffold_123-1575043694:488175..488481 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1575043694:487058..488116 | TCONS_00047250-exon-scaffold_123-1575043694:487058..488116 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1510915933:492986..493293 | TCONS_00047250-exon-scaffold_123-1510915933:492986..493293 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1510915933:488175..488481 | TCONS_00047250-exon-scaffold_123-1510915933:488175..488481 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1510915933:487058..488116 | TCONS_00047250-exon-scaffold_123-1510915933:487058..488116 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1491911889:492986..493293 | TCONS_00047250-exon-scaffold_123-1491911889:492986..493293 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1491911889:488175..488481 | TCONS_00047250-exon-scaffold_123-1491911889:488175..488481 | Clytia hemisphaerica | exon |
| TCONS_00047250-exon-scaffold_123-1491911889:487058..488116 | TCONS_00047250-exon-scaffold_123-1491911889:487058..488116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_123 | supercontig | scaffold_123:487058..493293 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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